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Marko Kaksonen

@kaksonen.bsky.social
1.5K followers 774 following 38 posts

Biologist fascinated by cells, molecules and the evolution of cellular processes. Membrane traffic, cytoskeleton, microscopy, fungi, evolutionary cell biology. www.unige.ch/sciences/biochimie/lab…

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Reposted by Marko Kaksonen
Emmanuel Levy's lab @elevylab.bsky.social · 25/09/2026
It took a while, but here we are. Our micDROP paper is out in @natcomms.nature.com, led by @atargt.bsky.social. She asked whether the sequence of a disordered region can self-recognize specifically. She measured this for ten IDRs in living yeast cells. www.nature.com/articles/s41...
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Justin Taraska @taraska.bsky.social · 14/09/2026
Join us this Wednesday! "Biophysics of Clathrin Coat Assembly, Curvature, and Mechanics" Wednesday, September 16, 2026 1:00–3:00 PM Eastern Time Registration and meeting access my.biophysics.org/Events/Calen... Talks by Marko Kaksonen, Jeanne Stachowiak, Julien Berro, and Padmini Rangamani.
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Baukje Hoogenberg @baukjeje.bsky.social · 11/09/2026
Do you want to label the nuclear envelope? Do you work on a non-model species? Try Concanavalin A! We tested ConA on various species across the eukaryotic tree and find it is a very useful ExM-compatible marker for the NE and ER. Read all about it in our preprint: www.biorxiv.org/content/10.6...
biorxiv.org
Concanavalin A as a pan-eukaryotic nuclear envelope marker for expansion microscopy
Across eukaryotes, the nuclear envelope exhibits distinct remodelling strategies during mitosis: complete breakdown (open mitosis), partial disruption (intermediate), or full retention (closed). Howev...
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Saravanan Palani @syncellbiolab.bsky.social · 10/09/2026
🚨 Our new @elife.bsky.social study dissects how a dividing cell keeps its septin scaffold and its contractile ring in step. 👉 elifesciences.org/articles/106... Spearheaded by @bindubhojappa.bsky.social #cellbiology #celldivision #septins #yeast #kinases
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Institut Jacques Monod @ijmonod.bsky.social · 10/09/2026
📢 Institut Jacques Monod Seminar 📅 September 18th 📍Institut Jacques Monod Next week, Prof. Omaya Dudin ( @dudinlab.bsky.social ) will present an Institut Jacques Monod seminar on the theme "Exploring multicellular developmental programs at the root of animals and beyond" ➡️ buff.ly/mY66omK
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Yury Bykov @yurabykov.bsky.social · 03/09/2026
We are looking for a postdoc to investigate the principles of cellular organization using state-of-the-art microscopy! Please repost to help us find a colleague :) Full details here bio.rptu.de/fileadmin/ag...
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Reposted by Marko Kaksonen
Paul & Virginie - Centriole Lab @centriolelab.bsky.social · 27/08/2026
Very happy to see our Nature Reviews Molecular Cell Biology Roadmap out! A fantastic collective effort, led by Carsten Janke and Zdenek Lansky, together with an amazing group of colleagues, and sparked by inspiring discussions at the Fondation des Treilles. www.nature.com/articles/s41...
nature.com
Towards a systems-level view of the microtubule cytoskeleton and its functions in physiology and disease - Nature Reviews Molecular Cell Biology
Microtubules are essential components of the cytoskeleton, yet important links between their molecular properties and organismal functions remain unresolved. In this Roadmap, Janke et al. discuss key ...
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Justin Taraska @taraska.bsky.social · 24/08/2026
The Biophysical Society Membrane Fusion, Fission, and Traffic Subgroup is hosting an exciting set of 4 virtual talks on Wednesday September 16th starting at 1 pm Eastern Time on clathrin structure and dynamics. Please join! www.biophysics.org/outreach/sub...
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Reposted by Marko Kaksonen
Cell Biology J-Club @cellclub.bsky.social · 23/08/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Clathrin differentially adapts its trimerisation domain during mammalian evolution to traffic the insulin-responsive GLUT4 glucose transporter.
In humans, the CHC22 isoform of clathrin regulates glucose metabolism by trafficking the GLUT4 glucose transporter for intracellular storage in skeletal muscle and release following insulin signalling...
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Reposted by Marko Kaksonen
Mara Duncan @mcduncanlab.bsky.social · 12/08/2026
Interesting--I wonder how broadly this destablization followed by stabilization stage is in traffic--does this happen with other AP traffic? What about things like retromer? We had some evidence that Ent5 clathrin binding was acting late in coat assembly, wonder if it is doing something similar.
molbiolcell.org
Clathrin binding by the adaptor Ent5 promotes late stages of clathrin coat maturation | Molecular Biology of the Cell
Clathrin adaptors link cargo to the clathrin coat. The clathrin adaptor Ent5 is also required for the maturation of clathrin coats at the trans-Golgi network or endosome, suggesting that it plays a ke...
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Reposted by Marko Kaksonen
Andrew Kennard @askennard.bsky.social · 19/08/2026
The kinetochore is essential for cell division across species, but its components and organization evolve dramatically. How can that be? Our first foray into this fascinating question is up now on biorxiv: 🧪 1/12 www.biorxiv.org/content/10.6...
biorxiv.org
Kinetochore diversification in Naegleria reveals plasticity in the kinetochore-microtubule interface
The kinetochore--the molecular machine that couples chromosomes to spindle microtubules--performs an essential, tightly regulated function, yet varies dramatically across eukaryotes. Microtubules are ...
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Tristan @tristamoeba.bsky.social · 12/08/2026
Checkout 𝘚𝘢𝘱𝘱𝘪𝘯𝘪𝘢 𝘭𝘶𝘬𝘰𝘭𝘪, a new species of amoeba isolated from cow poop that aggregates on the tips of dung fibers doi.org/10.64898/202... #ProtistsOnSky
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Marko Kaksonen @kaksonen.bsky.social · 11/08/2026
Endocytic clathrin coats are surprisingly dynamic: triskelia turn over in seconds. How is the turnover regulated and what is it for? Read Anne-Laure Boinet's preprint with @rouxlab.bsky.social www.biorxiv.org/content/10.6...
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Snezhka Oliferenko @alebenoit.bsky.social · 06/08/2026
Published!!! Homeostatic fun!!! Given it’s homeostatic perhaps should go for one exclamation mark! genesdev.cshlp.org/content/earl...
genesdev.cshlp.org
Adaptation of eukaryotic membrane homeostasis to species-specific cellular lipid landscapes
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
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Liz Miller @lizmillercu.bsky.social · 31/07/2026
Job alert! I'm recruiting a new post-doc to work on mechanisms of co-translational quality control in the ER. Looking for expertise in ribosome biology and yeast genetics/cell biology. Please reach out to me with any questions. www.dundee.ac.uk/work-for-us/...
dundee.ac.uk
Postdoctoral Research Assistant - UOD2336
Closing date: Thursday 27 August 2026, 23:59
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Jana Helsen @helsenjana.bsky.social · 16/07/2026
I am starting my lab at the University of Geneva next January! Incredibly excited to soon be joining the MOCEL department as an Asst. Professor. The lab will use evolutionary cell biology to study chromosomes, centromeres & speciation 🧬🔬🌱 Intrigued, want to join or collaborate? 🔗 helsenlab.org
helsenlab.org
Helsen lab | chromosome and centromere evolution
The Helsen lab at the University of Geneva explores how centromeres and chromosomes evolve, diversify, and function across eukaryotes. Discover our latest publications, research team, and open positio...
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myosinactncrazy.bsky.social @myosinactncrazy.bsky.social · 05/07/2026
www.cell.com/cell-reports... "Our findings suggest that actins are more diverse and biochemically specialized across species than previously recognized."
cell.com
Rapid aging and disassembly of actin filaments from two evolutionary distant yeasts
Billault-Chaumartin et al. directly compare the assembly dynamics of actin from three different species: from two yeasts widely used as model systems, and rabbit muscle actin which is commonly used in...
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Nicolas Chiaruttini @nkiaru.bsky.social · 02/07/2026
Here's Fable 5 attempt. Sailing is still a viable career !
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Rita Mateus @ritamateus.bsky.social · 30/06/2026
Our lab in a nutshell! :)
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Marko Kaksonen @kaksonen.bsky.social · 28/06/2026
I used AI to make clear visual instructions for tying a knot. Good luck!!
AI-generated step-by-step instructions for tying a knot that are not restricted by real-world topology or logic.
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MichaelMcMurray lab @mcmurraylab.bsky.social · 23/06/2026
Our new paper was, by definition, an adventure: stepping outside of our comfort zone, embracing the unknown, and engaging in activities where the outcome is uncertain. Includes discovery of a new species and working with a Native American tribe to name it… 🧵👇 onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Comparative Analysis of Stress Adaptation in the Yeast Microbiome of Cactus
Yeasts and related fungi isolated from cacti or nearby non-cactus plants were characterized phenotypically and genomically, revealing differences that hint at modes of adaptation to the cactus host.
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Justin Taraska @taraska.bsky.social · 23/06/2026
Looking for your next step after a BS/BA or MS in biology, cell biology, biochemistry, or a related field? My NIH lab in Bethesda, MD is looking for a Lab Manager/Technical Specialist. Interested in basic research? Please email me directly or learn about our lab here: irp.nih.gov/pi/justin-ta...
irp.nih.gov
Justin Taraska, Ph.D. | Principal Investigators | NIH Intramural Research Program
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Felix Campelo @felixmendu.bsky.social · 18/06/2026
Hi #membrane folks! This is today, last talks to close this academic year's trafficking seminar season :) 👇
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Mara Duncan @mcduncanlab.bsky.social · 16/06/2026
Just got a notice of award for an R01. I will be hiring. I'll be looking for either a staff scientist or postdoctoral researcher. The project explores the conserved HEATR5 family of proteins. Their roles in AP1 mediated traffic, and links to motors.🎉
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Anubhav Dhar @anubhavdhar.bsky.social · 15/06/2026
Expansion microscopy is revolutionary but application to actin cytoskeleton has been challenging. Not anymore....we combine IntAct + U-ExM to get an unprecedented 3D nanoscale view of actin isoforms in expanded cells. Read the full revised paper here: plos.io/4vansgr
plos.io
IntAct-U-ExM enables super-resolution imaging of isoform-specific actin networks across species
A previous study in PLOS Biology developed IntAct, a tool to study isoform-specific actin localization, dynamics and molecular interactions across species. In this Update Article, IntAct is coupled wi...
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Marko Kaksonen @kaksonen.bsky.social · 15/06/2026
Opuntia joins the curry plant in bloom ... if only for a day.
Opuntia and curry plant blooming together with bright yellow flowers.
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Saravanan Palani @syncellbiolab.bsky.social · 12/06/2026
Our new paper in @plosbiology.org introduces IntAct-U-ExM enabling isoform-specific imaging of actin at nanoscale across yeast, mammalian cells & primary neurons. Fabulous work spearheaded by @anubhavdhar.bsky.social along with an amazing team! #actin #U-ExM journals.plos.org/plosbiology/...
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The Rokas Lab at Vanderbilt University @rokaslab.bsky.social · 11/06/2026
Interested in how #fungi came about on this planet? If so, take a look at my new article that just came out in @annualreviews.bsky.social. doi.org/10.1146/annu...
doi.org
The Origin and Early Evolution of Fungi: Challenges, Inferences, and Principles
Fungi are widespread on our planet and essential for life as we know it, but how did they come about? Their last common ancestor lived hundreds of millions of years ago, but its characteristics, and t...
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EMBO @embo.org · 09/06/2026
Congratulations to Gautam Dey (EMBL) and Omaya Dudin (University of Geneva) for being awarded the EMBO Gold Medal 2026 in recognition of their outstanding contributions to the #LifeSciences in Europe! 🧪 www.embo.org/press-releases/embo-go…
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Yansong Miao @yansongmiao.bsky.social · 24/05/2026
Excited to share our newly published "A Multidimensional View of Biomolecular Condensates in Plant Biology" in the Annual Review of Plant Biology! We discuss emerging mechanisms, biological functions, and future directions. 🌱🔬 - www.annualreviews.org/content/jour...
annualreviews.org
A Multidimensional View of Biomolecular Condensates in Plant Biology
Biomolecular condensates have emerged as versatile regulators of plant cellular processes, offering a dynamic and reversible mechanism to coordinate development, stress response, and spatial organizat...
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Will Ratcliff @wcratcliff.bsky.social · 15/05/2026
1/35 New preprint! We show that obligate multicellularity removes fundamental population genetic barriers to multicellular adaptation. Even a brief unicellular phase can dramatically constrain the evolution of beneficial multicellular traits. www.biorxiv.org/content/10.6...
biorxiv.org
Obligate multicellularity circumvents population genetic barriers to collective-level adaptation
Complex multicellularity has evolved in just five lineages (animals, plants, brown algae, red algae, and fungi) and in each case, these organisms develop clonally and are obligately multicellular. While prior work has shown that clonal development plays a critical role in the evolution of complex multicellularity, none has disentangled this from the impact of obligate vs facultative multicellular life cycles. Here we use experimental evolution with engineered snowflake yeast ( Saccharomyces cerevisiae ) to directly test how life cycle structure affects multicellular adaptation. We created isogenic strains capable of switching between unicellular and clonal multicellular phases, then evolved populations for 192 days under obligately multicellular, facultatively multicellular, and obligately unicellular regimes. Obligately multicellular populations rapidly evolved larger size, primarily driven by a whole genome duplication, in all five replicates. Facultative populations showed dramatically constrained evolution, with tetraploidy evolving in only 2/10 facultative populations despite experiments demonstrating that it is strongly beneficial across the full life cycle. Mathematical modeling reveals the mechanistic basis for this constraint: facultative life cycles create establishment barriers through two population genetic effects. Group formation dramatically reduces the number of units of selection, making beneficial multicellular mutations vulnerable to drift. This asymmetry in population size between life cycle phases also allows cell-level selection to overpower group-level selection, eliminating mutations that provide group-level benefits but carry cell-level costs. These findings demonstrate that obligate multicellularity circumvents fundamental population genetic barriers to collective-level adaptation, helping explain why complex multicellularity has evolved exclusively in obligately multicellular lineages, and suggesting similar constraints may operate in other evolutionary transitions in individuality. ### Competing Interest Statement The authors have declared no competing interest. U.S. National Science Foundation, https://ror.org/021nxhr62, DEB-1845363 Howard Hughes Medical Institute Gilliam Fellowship National Science Foundation Graduate Research Fellowship
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Jonathan Kaufman @jggkaufman.bsky.social · 18/05/2026
It's finally out! Molecular architecture of mammalian AP3:ARF1 carriers - a mechanism for lysosomal membrane protein trafficking - from a combination of #biochemistry, #cryoET and #cellbiology 📝 Paper: www.science.org/doi/10.1126/... 🧵 Thread: subsequently #teamtomo #membranetrafficking
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Alex Johnson @ajcellbio.bsky.social · 15/05/2026
If you ever wondered about the history and current state of plant Clathrin-mediated endocytosis....here is a review just for you! onlinelibrary.wiley.com/doi/10.1111/... Was really fun to write this with awesome co-authors! ⚽️🌱🔬
onlinelibrary.wiley.com
Clathrin‐Mediated Endocytosis in Plants: Historical to Modern Advances
Ultrastructural studies by Bonnett and Newcomb in 1966 revealed the existence of coated vesicles budding from the plant cell plasma membrane. This review introduces this discovery and early questions...
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Roux Lab, Geneva @rouxlab.bsky.social · 12/05/2026
@mhakala.bsky.social shows that HRS forms bidimensional condensates onto endosomal membranes to flatten clathrin/ESCRT-0, an observation unexplained since the 2000s. Thx to Kukulski lab, @stefvass.bsky.social @colomlab.bsky.social @kaksonen.bsky.social @mishakudryashev.bsky.social rdcu.be/fihKk
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Felix Mikus @fmikus.bsky.social · 21/04/2026
Our ExM Atlas of eukaryotes is moving along with more and more images coming in - some featured in nature last month! Culture we’re provided by @ccapoban.bsky.social & Julius Lukeš during visits last year www.nature.com/immersive/d4...
nature.com
See the intricate worlds of parasites and algae — March’s best science images
The month’s sharpest science shots, selected by Nature’s photo team.
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Leonardo Almeida-Souza @leonardoasouza.bsky.social · 17/04/2026
1/13 🧵 ‼️Preprint alert. Are you interested in synthetic protein binders? Do you need to generate them? I present to you IARA: a fast, slim ML model that tells you which protein surfaces are good for binder design. www.biorxiv.org/content/10.6...
biorxiv.org
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Mukund Thattai @thattai.bsky.social · 15/04/2026
How did eukaryotic cells get their Golgi, endosomes, lysosomes and other endomembrane compartments? We show that endomembrane evolution depends on long periods of neutral molecular exploration, punctuated by sudden leaps. New preprint: www.biorxiv.org/content/10.6...
Evolutionary landscape of endomembrane systems. On top are two possible endomembrane systems, represented as directed graphs (pER: proto-endoplasmic reticulum; PM: plasma membrane; IC: intracellular compartment). In the layer below, endomembrane graphs are represented as nodes (white dots) connected by evolutionarily viable transitions (red lines). Collectively these dots and lines define an evolutionary landscape. The landscape breaks up into less functional (left) and more functional (right) endomembrane systems, introducing a selective bias.
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Linda Horianopoulos @linder-surprise.bsky.social · 13/04/2026
So pleased to share that this project identifying convergent evolution of aerobic fermentation in a poorly characterized genus of yeasts (Saturnispora) is now out in @embojournal.org @hittingerlab.bsky.social @rokaslab.bsky.social @glbioenergy.bsky.social link.springer.com/article/10.1...
link.springer.com
Convergent evolution of aerobic fermentation through divergent mechanisms acting on key shared glycolytic genes - The EMBO Journal
As the tree of life becomes increasingly accessible to molecular investigations, describing mechanisms underlying evolutionary convergence and constraint will be crucial to understanding diversificati...
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The EMBO Journal @embojournal.org · 10/04/2026
Convergent evolution of aerobic fermentation through divergent mechanisms acting on key shared glycolytic genes @hittingerlab.bsky.social , @linder-surprise.bsky.social et al show how distinct genetic routes can converge on the same genetic outcome link.springer.com/article/10.1...
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Liedewij Laan @liedewijlaan.bsky.social · 11/04/2026
Our paper is out m in BioEssays! We explore how a process-based view of biology, focusing on dynamic interactions rather than individual molecules, can reshape how we think about cell polarity, opening up new questions and ways of doing cell biology. onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Polarization as a Process: The Potential of Process Ontology for Understanding Cellular Symmetry Breaking
Process ontology proposes that biological systems are best understood as composed of dynamic processes rather than static components. However, application to concrete research practice has remained c...
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Stephane Vassilopoulos @stefvass.bsky.social · 20/03/2026
Beautiful EM image but check that perfect clathrin-coated pit photobombing the shot...😂
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myosinactncrazy.bsky.social @myosinactncrazy.bsky.social · 25/02/2026
www.pnas.org/doi/10.1073/...
pnas.org
Class-I myosin responds to changes in membrane tension during clathrin-mediated endocytosis in human induced pluripotent stem cells | PNAS
Clathrin-mediated endocytosis (CME) is an essential cellular process that needs to operate efficiently across a wide range of conditions. Internali...
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Isabel @isabelott.bsky.social · 06/02/2026
A very cool bug fact I just learned: the first published description of the process later defined as “clathrin-mediated endocytosis” – lets cells uptake large molecules; exploited by viruses – was yolk precursor internalization by maturing Aedes aegypti oocytes! 🦟 pubmed.ncbi.nlm.nih.gov/14126875/
scanning electron micrograph image of the surface of an oocyte in the process of internalizing yolk precursors, with the classical “pits” labeled
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Ulrich Schwarz @ulrichschwarz.bsky.social · 30/01/2026
📢Job alert📢 @uniheidelberg.bsky.social has an opening for a full W3-position on “Modeling of Biological Processes” 😀👍 Here is the call tinyurl.com/3w9e9dtf and application deadline is March 15. The group would be located at the beautiful #BioQuant center right in the middle of Neuenheimer Feld.
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Gallego Lab @gallegolab.bsky.social · 26/01/2026
Please share🙏: Our lab opens 2 PhD positions to investigate fungi's evolution: #Barcelona Wet lab in Biochemistry/Structural Biology of cryo-tolerant fungi www.upf.edu/documents/d/... Computational in Physical Chemistry of cellular processes under extrem environments www.upf.edu/documents/d/...
upf.edu
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Gallego Lab @gallegolab.bsky.social · 16/01/2026
0/10 🥳 our #exocyst paper out in @cp-cell.bsky.social, led by Marta, Sebas & @sasmeek.bsky.social in collab with @jonasries.bsky.social, @cmanzo.bsky.social & Castaño-Díez labs #Quantitative_Cell_Biology Continuum architecture dynamics of vesicle tethering in exocytosis www.cell.com/cell/fulltex...
cell.com
Continuum architecture dynamics of vesicle tethering in exocytosis
Data from complementary imaging techniques were integrated into a model that resolves the dynamic exocyst ensemble and membrane architecture during exocytosis, an essential cellular pathway. Sec18 med...
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 16/01/2026
📢 Open faculty position – Origins of Life We have an opening in our section at the University of Geneva! 🧬🚀 SPREAD THE WORD Apply here: jobs.unige.ch/www/wd_porta...
media.tenor.com
a woman says " would you like to join us " with her eyes closed
ALT: a woman says " would you like to join us " with her eyes closed
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Wilfling Lab @wilflinglab.bsky.social · 13/01/2026
We are excited to share our new preprint which is now available to read on biorXiv: doi.org/10.64898/202... 🎉🎉🎉
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Ivana Gasic @ivanagasic.bsky.social · 10/01/2026
New preprint from the lab 🎉: γ-tubulin is a novel target of the tubulin autoregulation pathway! Previously thought to exclusively target α- and β-tubulin mRNAs, we show that the TTC5–SCAPER–CNOT11 axis also degrades γ-tubulin mRNA, expanding the scope of this fundamental regulatory mechanism.
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Justin Taraska @taraska.bsky.social · 22/12/2025
My lab in the NIH Intramural Program (Bethesda, MD) will be recruiting postdoctoral fellows over the next year with flexible start dates. We work on nanoscale cellular imaging of the plasma membrane and related organelles. Please reach out if you’re interested. www.training.nih.gov/jobs/pdp-053...
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