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Mukund Thattai

@thattai.bsky.social
602 followers 237 following 73 posts

Physicist fascinated by biology, trying to understand how cells work. Also: public engagement, science and culture, puzzles.

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Mukund Thattai @thattai.bsky.social · 27/09/2026
Model collapse (AI fed on its own slop will eventually revert to a fixed distribution) is easy to explain - this is exactly what happens during audio feedback: a mic amplifies the output of the mechanical speaker instead of the human speaker. The result is a single frequency, instead of music.
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Mukund Thattai @thattai.bsky.social · 01/08/2026
To protest the unending Bangalore roadworks, I created a game called Swalpa Adjust Maadi (Kannada for "please bear with the inconvenience"). You play the contractor digging up the roads, the residents are mute spectators who always lose! A new puzzle each day: mthattai.github.io/Swalpa-Adjus...
mthattai.github.io
Swalpa Adjust Maadi
A game where you dig up Bangalore's roads.
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Mukund Thattai @thattai.bsky.social · 11/07/2026
Is it bad that I look at this and immediately think: 1. Textbook DNA replication. 2. Bacteria (and some archaea). 3. Eukaryotes (and some archaea). ?
Image with three candles. Top: one flame at the end, caption: "How I should be doing it". Middle: flames at both ends, caption: "What the doctor advised against". Bottom: Multiple flames, caption: "Current situation".
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Mukund Thattai @thattai.bsky.social · 05/07/2026
Rather than taking on wingnuts and alien conspiracies, we should do the harder job of confronting the entrenched molecule-centric view of biology, one which conditions students to use precisely such reductionist language to describe the "functions" of genes in their talks, papers and theses.
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Buzz Baum @buzzbaum.bsky.social · 05/07/2026
This seems more like a hard sell than a soft cell.
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Mukund Thattai @thattai.bsky.social · 03/07/2026
#glycotime! Eukaryotic cells can synthesise 1000s of glycans within the same Golgi. What tradeoffs occur when you try to maximise the yield of multiple trees simultaneously? We used a computational model to explore this, now published in @biophysj.bsky.social: www.sciencedirect.com/science/arti...
Figure showing how cells can synthesise multiple glycan trees simultaneously. A: Examples of two real glycan trees. B: Example reaction pathway to synthesise a desired glycan tree, including off-pathway reactions which lead to errors. C: Abstract setting showing three trees whose synthesis must be simultaneously optimised using a Pareto-optimality framework.
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Mukund Thattai @thattai.bsky.social · 15/06/2026
At a Thai restaurant in the 1970s, Feynman formulated and solved the problem of whether to stick with a favourite dish (ginger chicken) or try something new. 50 years later, his handwritten calculation has been deciphered and shown to be optimal! A fun read @pnas.org: www.pnas.org/doi/10.1073/...
Feynman's handwritten notes from a Thai restaurant, formulating and solving his "Restaurant Problem", preserved by his colleague Ralph Leighton.
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Thomas Lecuit @thomaslecuit.bsky.social · 13/06/2026
This will be on 26 June in Paris! 🤩You are welcome to join and participate in this exciting 1-day conference at the College de France on Biological computational accross areas of biology. Fantastic speakers. Free, no registration, at the heart of Paris on a lovely season. Worth planning a weekend…?
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Mukund Thattai @thattai.bsky.social · 25/05/2026
Why is mercury, but not cadmium, a room-temperature liquid? Why is gold, but not silver, yellow? Why are lead-acid batteries better than tin-acid ones? Amazingly, all these are due to relativistic corrections for electrons travelling close to the speed of light! en.wikipedia.org/wiki/Relativ...
en.wikipedia.org
Relativistic quantum chemistry - Wikipedia
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Will Ratcliff @wcratcliff.bsky.social · 15/05/2026
1/35 New preprint! We show that obligate multicellularity removes fundamental population genetic barriers to multicellular adaptation. Even a brief unicellular phase can dramatically constrain the evolution of beneficial multicellular traits. www.biorxiv.org/content/10.6...
biorxiv.org
Obligate multicellularity circumvents population genetic barriers to collective-level adaptation
Complex multicellularity has evolved in just five lineages (animals, plants, brown algae, red algae, and fungi) and in each case, these organisms develop clonally and are obligately multicellular. While prior work has shown that clonal development plays a critical role in the evolution of complex multicellularity, none has disentangled this from the impact of obligate vs facultative multicellular life cycles. Here we use experimental evolution with engineered snowflake yeast ( Saccharomyces cerevisiae ) to directly test how life cycle structure affects multicellular adaptation. We created isogenic strains capable of switching between unicellular and clonal multicellular phases, then evolved populations for 192 days under obligately multicellular, facultatively multicellular, and obligately unicellular regimes. Obligately multicellular populations rapidly evolved larger size, primarily driven by a whole genome duplication, in all five replicates. Facultative populations showed dramatically constrained evolution, with tetraploidy evolving in only 2/10 facultative populations despite experiments demonstrating that it is strongly beneficial across the full life cycle. Mathematical modeling reveals the mechanistic basis for this constraint: facultative life cycles create establishment barriers through two population genetic effects. Group formation dramatically reduces the number of units of selection, making beneficial multicellular mutations vulnerable to drift. This asymmetry in population size between life cycle phases also allows cell-level selection to overpower group-level selection, eliminating mutations that provide group-level benefits but carry cell-level costs. These findings demonstrate that obligate multicellularity circumvents fundamental population genetic barriers to collective-level adaptation, helping explain why complex multicellularity has evolved exclusively in obligately multicellular lineages, and suggesting similar constraints may operate in other evolutionary transitions in individuality. ### Competing Interest Statement The authors have declared no competing interest. U.S. National Science Foundation, https://ror.org/021nxhr62, DEB-1845363 Howard Hughes Medical Institute Gilliam Fellowship National Science Foundation Graduate Research Fellowship
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Andrew Roger @andrewjroger.bsky.social · 11/05/2026
Nice review @thattai.bsky.social ! Very helpful! Little quibble: Margulis didn't independently come up with the idea. In that paper she even cites Wallin for suggesting mitochondria derive from symbionts.
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Daniel Brady Mills @danbmills.bsky.social · 09/05/2026
Lynn did acknowledge these earlier authors (e.g., Merechowsky, Wallin), though, in her 1967 paper. "...these ideas are not new..." This is often overlooked, both by people who claim that she "stole" these ideas, as well as those who claim that she didn't become aware of them until later.
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Mukund Thattai @thattai.bsky.social · 09/05/2026
The origin story of eukaryotes has more plot twists than a Hollywood blockbuster! 🧵 Read more in my new review: doi.org/10.1146/annu.... Only in the 1960s were the terms "prokaryote" and "eukaryote" formalized! As originally defined, eukaryotes had complex architectures, prokaryotes did not.
Abstract of "The Concept of a Bacterium" by Stanier and van Niel, 1967, where the terms "eukaryotes" and "prokaryotes" were formalized.
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Mukund Thattai @thattai.bsky.social · 08/05/2026
Our world could do with 100 Attenboroughs. www.theguardian.com/tv-and-radio...
theguardian.com
‘The greatest ambassador for life on Earth’: Tributes paid to David Attenborough on his 100th birthday
Naturalist says he has been ‘overwhelmed by greetings’ as milestone is marked with event at Royal Albert Hall
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Mukund Thattai @thattai.bsky.social · 07/05/2026
Out now in @annualreviews.bsky.social: my review on the origins of eukaryotic membrane traffic! I propose that archaea-derived proteins supported a primordial system of tubules to ferry cargo between compartments. Modern coated vesicles may have been a later innovation. doi.org/10.1146/annu...
doi.org
A Tubules-First Model for the Origin of Eukaryotic Membrane Traffic
The discovery of membrane trafficking proteins in Asgard archaea—the closest archaeal relatives of eukaryotes—reveals the deep evolutionary roots of the eukaryotic endomembrane system. This review syn...
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Thomas Lecuit @thomaslecuit.bsky.social · 27/04/2026
Here is the announcement of a Symposium @college-de-france.fr on 26 June on Information Flow and Computation in Biological systems. A great line of speakers on a variety of topics from embryogenesis to neuroscience, immunology and microbiology. Free entrance, come if you are in Paris end of June 🤩
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Mukund Thattai @thattai.bsky.social · 18/04/2026
Excited to visit the @alleninstitute.org for the Lake Conference on Emergence and Self-Organization: lakeconferences.org/conf/17d01bb... I'll speak about Affordance Theory, pioneered by JJ Gibson in the 1970s. We use this framework to explore the evolution of eukaryotic endomembranes (see 🧵 below).
lakeconferences.org
Conference - Modeling Life from Cells to Tissues: Emergence and Self-Organization - Lake Conferences
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Mukund Thattai @thattai.bsky.social · 15/04/2026
How did eukaryotic cells get their Golgi, endosomes, lysosomes and other endomembrane compartments? We show that endomembrane evolution depends on long periods of neutral molecular exploration, punctuated by sudden leaps. New preprint: www.biorxiv.org/content/10.6...
Evolutionary landscape of endomembrane systems. On top are two possible endomembrane systems, represented as directed graphs (pER: proto-endoplasmic reticulum; PM: plasma membrane; IC: intracellular compartment). In the layer below, endomembrane graphs are represented as nodes (white dots) connected by evolutionarily viable transitions (red lines). Collectively these dots and lines define an evolutionary landscape. The landscape breaks up into less functional (left) and more functional (right) endomembrane systems, introducing a selective bias.
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Ishier Raote @ishier.bsky.social · 15/04/2026
Preprint from @thattai.bsky.social provides an elegant solution to a profound question: How can evolution – driven by gene duplication, deletion, and mutations produce complex endomembrane systems? Punctuated Evolution of Endomembrane Compartments in Proto-Eukaryotes www.biorxiv.org/content/10.6...
biorxiv.org
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Shashi Thutupalli @stpalli.bsky.social · 13/02/2026
Protocells from three inorganic salts, some formaldehyde and water? They grow? They synthesise organic molecules of core biomolecular classes: amino acids, sugars, lipid-like motifs? And, there are similar structures in today's oceans? Yes! Read on. arxiv.org/abs/2601.11013
arxiv.org
De novo emergence of metabolically active protocells
A continuous route from a disordered soup of simple chemical feedstocks to a functional protocell -- a compartment that metabolizes, grows, and propagates -- remains elusive. Here, we show that a homo...
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Mukund Thattai @thattai.bsky.social · 01/10/2025
It was a pleasure talking to Prof. Mahesh Panchagnula of IITM for his podcast. Our conversation went far beyond career advice, covering how living systems work, the role of math in the life sciences, and where groundbreaking discoveries in biology come from. youtu.be/wZeUX3G13pk?...
youtu.be
CRISPR, Vaccines & Biotech: Exploring Life Sciences with Prof. Mukund Thattai | Episode 22
YouTube video by Prof Mahesh Panchagnula
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Mukund Thattai @thattai.bsky.social · 24/08/2025
Gutting the humanities will not save the sciences. This piece is worth reflecting on: "The broad liberal arts education Carl Sagan received at the University of Chicago played an important role in his development as a scientist and intellectual." www.loc.gov/collections/...
loc.gov
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Mukund Thattai @thattai.bsky.social · 04/08/2025
I set out to review the evolution of eukaryotic intracellular traffic, but along the way a new hypothesis came into focus: maybe the earliest membrane carriers were tubules, not coated vesicles! New preprint: ecoevorxiv.org/repository/v... Here’s the idea. 🧵
A schematic showing two models for the evolution of the eukaryotic cell plan starting from an archaeal ancestor. The "inside-out" and "outside-in" models both lead to an intermediate stage with internal and plasma membranes connected by tubules. The sequence continues through the formation of an endomembrane lumen, followed by the emergence of membrane contact sites and tubular carriers, and finally coated vesicles and stable compartments.
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Mukund Thattai @thattai.bsky.social · 06/07/2025
I'll be in Kyoto all week, at the joint meeting of the Asian International Conference on Mathematical Biology & Japanese Society for Mathematical Biology. It features a broad lineup of topics and interesting talks, with speakers from across Asia and the world. pub.confit.atlas.jp/en/event/acm...
pub.confit.atlas.jp
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Mukund Thattai @thattai.bsky.social · 06/07/2025
New efforts in conservation and venom research are helping humans and snakes co-exist. So many interesting facts I did not know, in this great piece by Indulekha Aravind. www.thehindu.com/society/indi...
thehindu.com
Snakebite capital | What India must get right
Discover how experts in India are revolutionizing snakebite treatment and research to save lives and protect communities.
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Mukund Thattai @thattai.bsky.social · 21/06/2025
A truly unexpected discovery, and an important insight into how "life finds a way"!
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Mukund Thattai @thattai.bsky.social · 19/01/2025
It was great to see the exhibit "South Asia and the Institute" at Science Gallery Bengaluru. MIT played an outsized role in pre- and post-independence India, beginning with the first Indian student in 1882 (when MIT was barely two decades old!) digital-exhibits.libraries.mit.edu/s/south-asia...
digital-exhibits.libraries.mit.edu
Timeline
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Mukund Thattai @thattai.bsky.social · 02/01/2025
Raj Rewal, whose iconic brutalist Hall of Nations in New Delhi was demolished by the government in 2017, is also the architect of the National Centre for Biological Sciences campus. The nonagenarian recently shared his striking sketches from the 1960s: www.architecturaldigest.in/story/master....
Raj Rewal, Untitled Work, circa 1965, coloured ink on paper.
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Mukund Thattai @thattai.bsky.social · 24/12/2024
Map of Asia, Africa and Europe, in the little-known Mollusc projection.
Clam shell with a pattern that resembles a map of continents around the Indian ocean.
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Hiral Shah @hiralshah.bsky.social · 09/12/2024
Lots of excitement at the #MCBM workshop as participants image #UExM gels! NCBS pond is packed with biodiversity! Thanks @thattai.bsky.social, Sonia Sen & Anshika Singh for putting together a fantastic workshop. It has been a blast interacting with all the fantastic participants & TAs!
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Mukund Thattai @thattai.bsky.social · 07/12/2024
#blrlitfest on Dec 15th: I'll anchor a panel on "How Science Speaks" with science writers @anilananth.bsky.social and @simonsinghnerd.bsky.social, astrophysicist Annapurni Subramaniam, and structural biologist Venki Ramakrishnan. It's free, do attend! bangaloreliteraturefestival.org/year-2024/sc...
bangaloreliteraturefestival.org
Schedule 2024 - Bangalore Literature Festival 2024
Schedule for Bangalore Literature Festival 2024.
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Mukund Thattai @thattai.bsky.social · 04/12/2024
Our workshop has kicked off! Amazing instructors Aditya Nayak, @hiralshah.bsky.social and @stpalli.bsky.social will teach participants from all over India how to use expansion microscopy, holography and a flatbed scanner to study the shapes and structures of protists! www.ncbs.res.in/events/marin...
Participants listen to a lecture on expansion microscopy Teaching lab set up for hands-on sessions
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Mukund Thattai @thattai.bsky.social · 26/11/2024
The Indian muntjac (commonly known as the barking deer) has the lowest known chromosome number of any mammal - just three pairs of chromosomes! The closely related Chinese muntjac has 23 pairs of chromosomes, just like humans. en.m.wikipedia.org/wiki/Souther...
en.m.wikipedia.org
Southern red muntjac - Wikipedia
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Mukund Thattai @thattai.bsky.social · 24/11/2024
I first visited KITP-UCSB as a grad student in 2003, and immediately fell in love with it. Here is the story of how my notebook from a 2010 KITP program I co-ran, on evolutionary cell biology, became the source of research questions that keep me busy to this day! www.kitp.ucsb.edu/sites/defaul...
Extract from KITP's Fall 2024 Newsletter
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Mukund Thattai @thattai.bsky.social · 21/11/2024
Proteins fold in bits and pieces, first forming small structures that eventually coalesce into the native state. But the path is fraught with local traps: the protein must escape these to find the global minimum. If you want a feel for this search process, you should play Quintimble. quintumble.com
quintumble.com
Quintumble
The simple and intriguing 5-word puzzle
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Mukund Thattai @thattai.bsky.social · 20/11/2024
I got to know the extraordinary Prof. Devy during his year as the Obaid Siddiqi Chair at NCBS. His push to survey India's myriad languages counters the growing linguistic and cultural homogenization of the country.
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Mukund Thattai @thattai.bsky.social · 20/11/2024
Hunting for neutrinos in one of the world's deepest mines: @sandygrains.bsky.social tells the story of the the Kolar Gold Fields. If you visit Science Gallery Bengaluru's Sci560 exhibit, you can see original artefacts from those historic experiments. theprint.in/science/how-...
theprint.in
How experiments at Karnataka's Kolar Gold Fields are last remaining piece of India’s neutrino legacy
The first groundbreaking finding was in 1965, with the world’s first atmospheric neutrino detection. Since the labs began closing in 1993, efforts to advance research have failed.
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Mukund Thattai @thattai.bsky.social · 19/11/2024
My most prized possession, and my deepest regret. Carl Sagan is the reason I became a scientist, it was a dream come true to be accepted into his class. But he was suffering from cancer, and unable to teach. I never met him. He died a year later, aged 62. Sagan would have been 90 this November.
Letter from Carl Sagan dated December 5, 1995.
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