Reposted by Clausen Labc0nc0rdance @c0nc0rdance.bsky.social · 27/09/2026I'll save you the click-through: A lab at University of Copenhagen had been feeding draft manuscripts & data into "Claude Science" & then Anthropic announces a discovery that this lab made a year ago but hasn't published yet. It's plausible that Claude found the same signatures independently... 7253110
Reposted by Clausen Labpaveltomancak.bsky.social @paveltomancak.bsky.social · 20/09/2026Wow. Amazing, prescient vision of the future of academia by @giorgio.gilest.ro You don’t need to agree, but read and consider. 186
Reposted by Clausen LabNoelia Urbán Avellaneda @antsinthecarpet.bsky.social · 17/09/2026🎉Preprint out! In our new manuscript, we reveal that, much like us, wake up (proliferation) and sleeping (quiescence) patterns of adult neural stem cells are controlled by the circadian clock machinery. www.biorxiv.org/content/10.6...biorxiv.orgPER2- and state-dependent transcriptional programs gate neural stem cell proliferation with niche-specific circadian autonomyAdult neural stem cells (NSCs) in the mouse brain are predominantly quiescent, with activation tightly regulated to balance neurogenesis and stem cell maintenance. Circadian clocks temporally organize... 13110
Reposted by Clausen LabKranzusch Lab @kranzuschlab.bsky.social · 10/09/2026Stunning cryo-ET analysis from the Harrison Lab capturing every stage of how non-membrane viruses infect animal cells www.science.org/doi/10.1126/... 08326
Reposted by Clausen Labsedakoyuncu.bsky.social @sedakoyuncu.bsky.social · 03/09/2026Time to share some exciting news! 🎉 I am very happy to announce that my project UbiAge has been awarded an ERC Starting Grant. I am incredibly grateful to everyone who has supported me throughout this journey: my mentors, colleagues, friends, and, most importantly, my family. 2131
Reposted by Clausen LabSavitski Lab @savitski-lab.bsky.social · 20/08/20261/5 How much phosphorylation can a single kinase deposit? In our new study with @typaslab.bsky.social out in @nature.com, phage T7's kinase (T7K) modifies almost all the E. coli proteome + more densely than all ~500 kinases do our own proteomes 🤯 www.nature.com/articles/s41...nature.comPervasive phosphorylation by phage T7 kinase disarms bacterial defences - NatureThe T7 bacteriophage deactivates bacterial defence systems through T7K phosphorylation of nearly all host and phage proteins during infection. 58733
Reposted by Clausen LabSilvia Ramundo @sramundo.bsky.social · 19/08/2026A stress response can be a great starting point for discovering new biology! By following genes regulated during the chloroplast unfolded protein response, we’re discovering novel factors involved in chloroplast homeostasis. Here’s the first one we characterized: www.pnas.org/doi/10.1073/...pnas.orgVIA1 is a conserved regulator of thylakoid membrane integrity that acts through VIPP1 | PNASThylakoid membranes are indispensable for oxygenic photosynthesis, yet the mechanisms that protect these membranes from photooxidative damage remai... 28230
Reposted by Clausen LabElliott Lab @elliottlab.bsky.social · 14/08/2026Huge effort from the Lab into the mechanics of the mysterious #ubiquitin like protein FAT10 – taking structural snapshots of FAT10 activation by UBA6 and transfer onto UBE2Z plus really interesting insights into InsP6 regulating FAT10 conjugation pathways: www.nature.com/articles/s41...nature.comStructural determinants for FAT10 activation and transfer from UBA6 to E2 enzymes - Nature CommunicationsCryo-EM captures FAT10 activation and transfer from UBA6 to E2 UBE2Z, revealing FAT10 monopolises UBA6. Efficient transfer requires E2 engagement of both FAT10 UBL domains, particularly UBL2, and co-o... 12618
Reposted by Clausen LabThe EMBO Journal @embojournal.org · 11/08/2026What’s the function of embryonic ‘cytoplasmic lattices’? Using cryo-ET, @kashishsingh.bsky.social @carter-lab.bsky.social and coworkers reveal them as megadalton-size hubs of ubiquitination proteins/ubiquitin transfer link.springer.com/article/10.1...link.springer.comIn-situ cryo-ET of mouse embryos reveals cytoplasmic lattices contain ubiquitin-charged E2-E3 ligase assemblies - The EMBO JournalCytoplasmic lattices (CPLs) are filamentous assemblies essential for mammalian embryonic development. They are known to regulate organelle organization, spindle assembly, and protein homeostasis, but ... 03617
Clausen Lab @clausenlab.bsky.social · 12/07/2026Virome-wide ubiquitin ligase discovery reveals diverse mechanisms of immune evasion | 🤩 120
Reposted by Clausen LabMikko Taipale @miketilapia.bsky.social · 30/06/2026Our evil ORFeome paper is out! In collaboration with @alex-stark.bsky.social, we screened ~4,000 viral proteins and secreted effectors from bacteria and parasites, covering hundreds of diverse pathogens, for phenotypes in human cells. 29943
Reposted by Clausen LabRan Blekhman @blekhman.bsky.social · 27/06/2026I wanted to like QED's new 1% preprint ranking. I really did. But the more I looked at the data, the more uncomfortable it made me. Here is my full peer review. open.substack.com/pub/blekhman...open.substack.comMy Peer Review of The 1%I wanted to like QED's new 1% ranking. I don't. 1720888
Reposted by Clausen LabAngela Andersen @angelaandersen.bsky.social · 24/06/2026For the first time, we can see individual mRNAs in 3D inside cells at nm precision. Their shapes vary by gene and subcellular location. Congrats @fbzt.bsky.social & team @impvienna.bsky.social Top 1% @qedscience.bsky.social Edited by @lifescienceeditors.bsky.social www.biorxiv.org/content/10.6...biorxiv.orgSuper-resolved imaging of mRNA ultrastructure in cellsMessenger RNA (mRNA) is a central polymer of gene expression, whose ultrastructure and defining regulatory rules remain unclear. To visualize the ultrastructure of mRNA, we here develop Combi-PAINT, a... 03513
Reposted by Clausen LabEMBO @embo.org · 09/06/2026Congratulations to Gautam Dey (EMBL) and Omaya Dudin (University of Geneva) for being awarded the EMBO Gold Medal 2026 in recognition of their outstanding contributions to the #LifeSciences in Europe! 🧪 www.embo.org/press-releases/embo-go… 1622954
Reposted by Clausen LabGregor Mendel Institute of Molecular Plant Biology @gmivienna.bsky.social · 28/05/2026New study published in Science! Led by @thevirusmc.bsky.social and @plantophagy.bsky.social, former group leader at the GMI of the @oeaw.bsky.social, the researchers set out to understand how autophagy – the cell’s clean-up and recycling system – mediates plant immune response to viral infection. 3238
Reposted by Clausen LabRichard Sever @richardsever.bsky.social · 24/05/2026"I would like to emphasize the importance of question-driven science...young scientists might enjoy science more if they are thinking about questions rather than just collecting data" journals.biologists.com/jcs/article/...journals.biologists.comInterview with Noboru Mizushima – President of the Japan Society for Cell BiologyNoboru Mizushima is Professor of Biochemistry and Molecular Biology at the University of Tokyo, Japan, where he runs a laboratory studying the mechanisms and physiological functions of autophagy and o... 213150
Clausen Lab @clausenlab.bsky.social · 21/05/2026Open Postdoc Position - Giant E3 ligases: mysterious mechanisms & non‑protein substrates. Interested? Join us to uncover how these molecular giants tag lipids, RNAs, sugars beyond proteins, on organelles and pathogens, to defend the cell. Details & Application here www.imp.ac.at/career/open-... 22836
Reposted by Clausen LabAlexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 12/05/2026😀 see also www.nature.com/articles/s41...nature.comRNA-triggered cell killing with CRISPR–Cas12a2 - NatureCas12a2 enables RNA-triggered, sequence-specific killing of eukaryotic cells via widespread DNA shredding, allowing selective elimination of cells on the basis of gene expression, including virus-infe... 2134
Reposted by Clausen LabInés @ines-ddo.bsky.social · 11/05/2026Our paper is finally out! 🥳 If you want to know how a single Salmonella effector rewires the whole macrophage transcriptional landscape by hijacking one host transcription factor, check our latest research! Thanks to the @thurstonlab.bsky.social and @peterwshill.bsky.social labs for an amazing work!sciencedirect.comSalmonella effector SteE reprograms the macrophage regulatory network to drive specific hyperactivation of STAT3 target genesThe ability of Salmonella Typhimurium to exploit macrophages as a niche for survival, replication, and dissemination is central to its pathogenesis. T… 03313
Reposted by Clausen LabDavid Teis @teislab.bsky.social · 07/04/2026We offer a PostDoc position for a fully funded project on lipid-encoded #lipidtime protein quality-control checkpoints at the Golgi: great collaborators, excellent working & living conditions & benchspace with a view ;) Please share and repost! 11628
Reposted by Clausen Labdave dougan @douganlab.bsky.social · 28/03/2026Structure-function analysis of the bacterial ClpE/ClpP AAA+ protease - Journal of Biological Chemistry www.jbc.org/article/S002...jbc.orgStructure-function analysis of the bacterial ClpE/ClpP AAA+ proteaseGeneral and regulatory proteolysis in bacteria is executed by a set of ATP-dependent proteases composed of hexameric ring-forming AAA+ proteins and associated peptidase barrels (e.g. ClpP). These AAA+... 083
Reposted by Clausen LabKelly Nguyen @kellythd-nguyen.bsky.social · 26/03/2026Proud to share the yeast telomerase structure, led by the talented @hongmiaohu.bsky.social in collaboration with the Wellinger and Chartrand labs. Discovered 37 years ago and took us nearly 7 years but totally worth the wait 😍. www.science.org/doi/10.1126/... www.youtube.com/watch?v=gFE4...youtube.comCryo-EM structure of yeast telomeraseYouTube video by MRC Laboratory of Molecular Biology 920675
Reposted by Clausen LabCarter Lab @carter-lab.bsky.social · 24/03/2026Excited to share our work on the structure and function of cytoplasmic lattices within mouse embryos. A collaborative effort with @niakanlab.bsky.social and work led by @kashishsingh.bsky.social and @inaharasimov.bsky.social . It is now out on BioRxiv: www.biorxiv.org/content/10.6... 620684
Reposted by Clausen LabMRC Laboratory of Molecular Biology @mrclmb.ac.uk · 09/03/2026We’re looking for a creative & enthusiastic postdoc with expertise in cryo-EM or protein biochemistry to join @annebertolotti.bsky.social (LMB Neurobiology Division) and help solve structures of key stress signalling enzymes and develop new inhibitors. www.nature.com/naturecareer... Apply by 22 MAR 078
Reposted by Clausen LabViroscope @viroscope.bsky.social · 07/03/2026The Trojan Horse is real, and it’s microscopic! 🐴🦠 Our paper is out today in @cellcellpress.bsky.social! We discovered that deltaviruses physically hide INSIDE helper viruses to sneak into new cells. And to prove it, we had to image them from every angle. 🧵👇 www.sciencedirect.com/science/arti...sciencedirect.comDeltaviruses spread through a viral Trojan HorseHepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr… 47229
Clausen Lab @clausenlab.bsky.social · 06/03/2026Ubiquitin & Friends Fiesta in Vienna, 29-30 April 2026. Great speakers, small size, a friendly community, perfect for early-career researchers to connect with fellow ubiquitin enthusiasts. Sign up at www.protein-degradation.org/symposium/ and submit abstracts for talks and awards. #ubfriends26 12115
Reposted by Clausen LabLeo Kiss @leokiss.bsky.social · 05/03/2026You are passionate about ubiquitin, proteostasis and cellular biochemistry and want to be part of a collaborative, ambitious, excited and fun team? I am recruiting PhD students via the @imprs-lm.bsky.social graduate school: www.imprs-lm.mpg.de/index.php/le... (2/3)imprs-lm.mpg.deKiss-introIMPRS-LM stands for International Max Planck Research School for Living Matter. We are interested in the molecular, chemical and physical properties 11510
Reposted by Clausen LabLeo Kiss @leokiss.bsky.social · 05/03/2026I am incredibly excited to share that I will start my independent lab at the @unidue-zmb.bsky.social at the @unidue.bsky.social as Junior Professor of Cellular Biochemistry. Research in my lab has the goal to decipher the ubiquitin code! There are multiple open positions! (1/3) 118722
Reposted by Clausen LabIan Kelsall @iankelsall.bsky.social · 01/03/2026🚨⚠️ New Preprint Alert! ⚠️ 🚨 www.biorxiv.org/content/10.6... Screening p97 cofactors, @prithadg.bsky.social identified FAF2 as the strongest activator of the p97-UFD1-NPL4 complex. Leveraging her mechanistic descoveries, we designed 𝘥𝘦 𝘯𝘰𝘷𝘰 binders that could also enhance p97 substrate unfolding. 22713
Reposted by Clausen LabArne Elofsson @handle.invalid · 23/02/2026seems interesting www.biorxiv.org/content/10.6...biorxiv.org 071
Reposted by Clausen LabMara Mueller @muellermara.bsky.social · 19/02/2026Mammalian cells form hibernating disomes akin to those in bacterial cells - but connected via ribosomal RNA www.science.org/doi/10.1126/... co-first with: @andschwarz.bsky.social with: @lea-dietrich.bsky.social, @sgiando.bsky.social, @erin-schuman.bsky.social and many more 🧵 0/6 #MolBio 🧪 510036
Reposted by Clausen LabNature Chemical Biology @natchembio.nature.com · 17/02/2026Polymerization-inducing chimeras (PINCHs) are a novel bifunctional modality that sequesters target homodimers in a polymeric state, thereby inhibiting their function www.nature.com/articles/s41...nature.comA pharmacological modality to sequester homomeric proteins - Nature Chemical BiologyPolymerization-inducing chimeras are a novel bifunctional modality that uses protein symmetry to sequester targets by forming insoluble supramolecular assemblies. This approach overcomes reliance on a... 095
Reposted by Clausen LabKresten Lindorff-Larsen @lindorfflarsen.bsky.social · 16/02/2026Happy to share our newest preprint on Parkin missense variants in work led by Erna Sol & @vvouts.bsky.social in @rhp-lab.bsky.social Using a multiplexed assay we determined the effects of 9,212 out of 9,300 single amino acid substitutions and nonsense Parkin variants. 1/n doi.org/10.64898/202... 13012
Reposted by Clausen LabHaselbach Lab @haselbachlab.bsky.social · 11/02/2026And a new paper from the lab. A follow up to a previous study in which we elucidate the mechanism of the nuclear transport. Read the full story: www.nature.com/articles/s41...nature.comA multivalent adaptor mechanism drives the nuclear import of proteasomes - Nature CommunicationsNuclear protein homeostasis relies on proteasome import into the nucleus. Here the authors identify how assembled human proteasomes are transported across the nuclear pore complex and reveal a mechani... 14221
Reposted by Clausen LabAlexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 09/02/2026Look at this 🙂 #CryoEM Structural basis for CTCF-mediated chromatin organization by @lucas.farnunglab.com @voslab.org www.biorxiv.org/content/10.6... 47618
Reposted by Clausen LabJonathan Kagan @jkagan1.bsky.social · 06/02/2026Too much data, too little thinking. A important essay from Ruslan Medzhitov on the importance of understanding data, not just generating it. A must read. @Yale www.nature.com/articles/s41...nature.comOn the balance of knowledge - Nature Reviews ImmunologyRuslan Medzhitov shares his thoughts on the balance between generating data and developing theories in immunology, with a focus on exploring the rules that govern complex systems. 27427
Reposted by Clausen LabNature Chemical Biology @natchembio.nature.com · 05/02/2026A new paper reports a “nucleotide code” that coordinates Lis1-dynein binding stoichiometry, which in turn governs Lis1’s ability to relieve dynein autoinhibition www.nature.com/articles/s41...nature.comA nucleotide code governs Lis1’s ability to relieve dynein autoinhibition - Nature Chemical BiologyA combination of biochemical, cell biological and electron microscopy analyses reveal a ‘nucleotide code’ that coordinates Lis1–dynein binding stoichiometry, which in turn governs Lis1’s ability to re... 062
Reposted by Clausen LabNiko Dalheimer @niko-dalheimer.bsky.social · 05/02/2026I’m excited to share my first-author paper, with co-first author @rongqinxiaoxiao.bsky.social, now out in @nature.com. We developed a live-cell single-particle tracking platform to see how TRiC & prefoldin engage proteins during co- and post-translational folding. 1/9 www.nature.com/articles/s41...nature.comSingle-molecule dynamics of the TRiC chaperonin system in vivo - NatureSingle-particle tracking experiments in intact cells reveal dynamic co- and post-translational interactions of the TRiC–PFD chaperonin complex with client proteins during in vivo protein folding. 13613
Reposted by Clausen LabNature @nature.com · 05/02/2026Nature research paper: PtdIns(3,5)P2 is an endogenous ligand of STING in innate immune signalling go.nature.com/4klvMp1go.nature.comPtdIns(3,5)P2 is an endogenous ligand of STING in innate immune signalling - NaturePhosphatidylinositol 3,5-bisphosphate is a ligand of STING and, together with cGAMP, induces STING activation and innate immune responses. 0257
Reposted by Clausen LabDavid Balchin @davidbalchin.bsky.social · 19/01/2026Our latest cotranslational folding story is now published @cp-molcell.bsky.social. Really cool (I think) new ideas about how exactly the ribosome directs folding and assembly to make sure complicated proteins mature efficiently in cells. www.cell.com/molecular-ce...cell.comThe ribosome synchronizes folding and assembly to promote oligomeric protein biogenesisLarge oligomeric proteins constitute a major fraction of proteomes, but are difficult to refold in vitro, raising the question of how cells direct their biogenesis. Roeselová and Shivakumaraswamy et a... 24423
Reposted by Clausen LabHaselbach Lab @haselbachlab.bsky.social · 19/01/2026Have a look at our new structure of co translational folding in yeast. This is collaborative work initialized by the Rospert lab from the @uni-freiburg.de. Structural work has been done by the amazing @lgrundmann.bsky.social Stay tuned for the next ribosome paper from him, following very soon. 14415
Reposted by Clausen LabRasmus Hartmann-Petersen @rhp-lab.bsky.social · 16/01/2026New preprint! Led by @sarahgersing.bsky.social we map how 7,500+ variants in glucokinase (GCK) affect binding to GKRP and disentangle this from stability. We now have activity, abundance, and interaction scores for 7,128 GCK variants - a resource for understanding phenotypes and glucose homeostasis. 0166
Reposted by Clausen LabHenne lab @hennelab.bsky.social · 16/01/2026With so many great reviews on LDs already out, do we need another? Sarah @cohenlaboratory.bsky.social and I were approached by @natrevmcb.nature.com to do a review on LD heterogeneity and inter-organelle contacts...topics in reviews, but not a focus. Fun project! www.nature.com/articles/s41...nature.comHeterogeneity, dynamics and organelle interactions of lipid droplets - Nature Reviews Molecular Cell BiologyLipid droplets have key roles in energy storage and lipid metabolism. This Review discusses tools used for assessing lipid droplet heterogeneity, and how their heterogeneous composition and interactio... 12511
Reposted by Clausen LabAlexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 15/01/2026"RNAPII clusters reflect local accumulations of transcriptionally engaged polymerases and do not form through higher-order mechanisms such as phase separation" 😬 www.biorxiv.org/content/10.1... by the @mirlab.bsky.socialbiorxiv.orgA single cluster of RNA Polymerase II molecules is stably associated with active genesIn eukaryotic nuclei, transcription is associated with the clustering of RNA Polymerase II (RNAPII) molecules. The mechanisms underlying cluster formation, their interactions with genes, and their imp... 43113
Reposted by Clausen LabPhilipp Dexheimer @philippdexheimer.bsky.social · 15/01/2026Hey #portfolioday! I'm a bloke who used to investigate Genetics before turning into a full-time Artist. Now I do handmade installations, molecular graffiti, and digital design to convey the beauty of Science. 0111
Clausen Lab @clausenlab.bsky.social · 13/01/2026a Trp/Phospho/Ub trifecta linking metabolism and degradation - wow 🤩 big congrats to the whole team for this amazing, almost historic study. 0141
Reposted by Clausen LabSFB Targeted Protein Degradation @sfb-tpd-vienna.bsky.social · 10/01/2026Join us for the #Ubiquitin & Friends Symposium 2026, April 29-30, in Vienna! Fantastic guest speakers👇 & many slots for talks from abstracts, flash-talks & posters. Lots of opportunities to network. Register now to save your spot! ➡️ www.protein-degradation.org/symposium/ #ubfriends2026 13521
Reposted by Clausen LabAlice Ting @aliceyting.bsky.social · 08/01/2026Can we design mutations that bias proteins towards desired conformational states? Today in @science.org, we introduce Conformational Biasing (CB), a simple and scalable computational method that uses contrastive scoring by inverse folding models to identify conformation-biasing mutations.science.orgComputational design of conformation-biasing mutations to alter protein functionsConformational biasing (CB) is a rapid and streamlined computational method that uses contrastive scoring by inverse folding models to predict protein variants biased toward desired conformational sta... 111737
Reposted by Clausen LabDavid Bartel's Lab @bartellab.bsky.social · 06/01/2026We are thrilled to share our latest work uncovering the mechanistic basis of target-directed microRNA degradation (TDMD). This work was driven by @jakobfarnung.bsky.social and @elenaslo.bsky.social in a fantastic collaboration with Brenda Schulman's lab. tinyurl.com/E3TDMD (1/5) 29630