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alex0arbitino.bsky.social

@alex0arbitino.bsky.social
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Mir Lab @mirlab.bsky.social · 09/10/2026
1/ Our paper, “Enhancer binding kinetics explain transcription factor hub formation,” is now published! Here we set out to understand why transcription factors form bright clusters or “hubs” in the nucleus, and whether those hubs actually control gene activity. tinyurl.com/38uf8348
tinyurl.com
Enhancer binding kinetics explain transcription factor hub formation
Transcription factors (TFs) form dynamic, high-concentration clusters, condensates, or hubs, proposed to increase TF binding frequency at target enhancers. However, how enhancer sequence shapes hub pr...
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Paul & Virginie - Centriole Lab @centriolelab.bsky.social · 08/10/2026
We are updating our Expansion Microscopy (U-ExM) website with : - Protocols tips to help you get started - Examples of applications across different biological systems. - work in progress - an antibody database 👉 mocel.unige.ch/research-gro...
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Luca @lucagalletti.bsky.social · 04/10/2026
Water drops IG: @artby_suzan www.instagram.com/artby_suzan?...
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worm @rfksbrainworm.bsky.social · 02/10/2026
If you ever wondered why visible light is those particular wavelengths, it's because life evolved to see in the narrow range where water is transparent
Diagram of absorption of emf by water. There's a gap right that dips in the 500 nm range
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David Drubin @drubin.bsky.social · 22/09/2026
In a new preprint we provide evidence that biophysical properties of protein condensates can explain the order of events in the endocytic pathway, and that these events are tuned by protein condensate phosphorylation. www.biorxiv.org/content/10.6...
biorxiv.org
Phosphoregulation of hierarchical protein condensate formation during clathrin-mediated endocytosis
The sequential assembly of over 50 proteins during clathrin-mediated endocytosis (CME) is well documented in yeast. However, the mechanisms governing this ordered recruitment remain poorly understood....
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Giovanni D’Angelo @giodang.bsky.social · 23/09/2026
#lipidtime: It's a lipid universe. Today in Nature we publish the Lipid Brain Atlas, the first map of membrane lipid composition across the entire mouse brain, a layer of organisation that cell-type and transcript maps had left out. #lipidomics #neuroscience #BrainAtlas
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Doudna Lab @doudna-lab.bsky.social · 19/09/2026
Out now in Science: Two papers from our lab reveal VIPR, an RNA-guided DNA-targeting system in bacteriophages, providing clues to the origins of CRISPR www.science.org/doi/10.1126/... www.science.org/doi/10.1126/... Congrats to Peter Yoon, @kenjmloi.bsky.social @terryzzy.bsky.social, T.Docter & team
science.org
A noncontiguous code for RNA-guided DNA recognition at the origin of CRISPR-Cas
CRISPR-Cas provides RNA-mediated adaptive immunity, but how its first RNA-guided effector arose is unclear. In this study, we report the discovery of Viral Interference Programmable Repeat (VIPR) syst...
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Kazuhiro Maeshima @kazu-maeshima.bsky.social · 08/09/2026
Is euchromatin really “open”? 🧬 Using super-resolution imaging🔬 our new study @natgenet.nature.com reveals: Euchromatin forms condensed domains in live cells. Cohesin constrains them and prevents domain mixing for proper transcriptional insulation🚧 🔗 www.nature.com/articles/s41... (1/2)
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Philippe Batut @philippebatut.bsky.social · 10/09/2026
🧬🔬 Why are enhancers transcribed and how does that impact gene regulation? I’m really excited to share our new paper in @science.org showing that noncoding RNAs control the timing of gene activation in embryos. With Mike Levine #ScienceResearch @columbiamed.bsky.social A few highlights below... 🧵👇
science.org
Noncoding transcription controls the developmental dynamics of long-range gene regulation
The genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely ...
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Florian Mayer @florianmayer.bsky.social · 11/09/2026
Excited to share our preprint on Ignicoccus cell divison: only the inner membrane divides, progeny cells accumulate in cell clusters and pop-out! www.biorxiv.org/content/10.6... Great work with the labs: @buzzbaum.bsky.social @curiousdina.bsky.social @anja1.bsky.social @tbharat-lab.bsky.social
biorxiv.org
The life cycle of an archaeon with multiple membranes
Many prokaryotes are diderms. They divide using an FtsZ division ring to simultaneously constrict physically coupled inner and outer membranes to form daughter cells with two membranes. Currently, onl...
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SCGE @scge.bsky.social · 04/08/2026
TnpB is a diverse family of RNA-guided endonucleases associated with prokaryotic transposons. Because of their small size and putative evolutionary relationship to CRISPR–Cas12, TnpB enzymes hold great potential for genome editing. However, most TnpBs lack robust gene-editing activity. (1/4)
nature.com
Engineered TnpB genome editors for plants and human cells identified by ribonucleoprotein mutational scanning - Nature Biotechnology
TnpB endonucleases are engineered for improved genome editing.
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The Transmitter @thetransmitter.bsky.social · 07/09/2026
I fear that placing too much emphasis on a specific interpretation of dimensionality, or treating dimensionality as an end-all quantification of some aspect of neural computation, may lead us down the wrong path, writes @mattperich.bsky.social. #neuroskyence www.thetransmitter.org/neural-dynam...
thetransmitter.org
Dimensionality—neuroscience’s red herring?
Placing too much emphasis on a specific interpretation of dimensionality may lead neuroscience down the wrong path.
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Job Dekker @jobdekker.bsky.social · 24/08/2026
How do nuclear compartments form inside cell nuclei? We show RNA glues certain loci together to form a nuclear compartment. This involves special GC-rich regions of highly expressed genes that also associate with nuclear speckles, but interactions between these loci are independent of speckles!
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Get To Know Nature @gettoknownature.bsky.social · 29/08/2026
AN INVERTEBRATE CELEBRATION for #InverteFest. Explore a range of bugs and crabs and worms. Plus some gorgeous flowers along the way #BugSky 🌿 🦀 🧪 🐡
m.youtube.com
Meet Some Weird & Wonderful Invertebrates
YouTube video by Get To Know Nature
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Agnes Noy @agnesnoy.bsky.social · 27/08/2026
How do DNA duplexes recognize and pair with each other? Thomas Catley, Victor Velasco Berrelleza, @alicepyne.bsky.social and myself present the first direct visualization of DNA-DNA pairing mediated by divalent cations, confirming the decade-old DNA zipper model! doi.org/10.1093/nar/...
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Laura Bianchi @laurafbianchi.bsky.social · 27/08/2026
Ever wondered how epithelial cells clear apoptotic cells while maintaining tissue cohesion?🍝🔗 Check our new paper in which we show that E-cadherin plays a dual role in regulating basal cortex dynamics upon phagocytosis while maintaining connected tissue organization www.nature.com/articles/s41...
nature.com
De novo E-cadherin/catenin complex formation controls basal epithelial mechanics and force transmission for apoptotic cell clearance - Nature Communications
Epithelial cells remodel their shape during phagocytosis while preserving tissue cohesion. Here, authors show that the E-cadherin/catenin adhesion complex is repurposed at phagocytic contacts, where i...
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 18/08/2026
In work led by Ikki Yasuda in our lab, we extend the CALVADOS ecosystem with a model for double-stranded RNA and DNA and show how it can be used to study differential partitioning into condensates doi.org/10.64898/202...
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LIGO Scientific Collaboration @ligo.org · 17/08/2026
Happy birthday #GW170817, our first observation of a binary neutron star and first gravitational-wave detection with a multimessenger counterpart www.youtube.com/watch?v=-Yt5... 🔭🧪⚛️ #NeutronStarWeek
youtube.com
Discovery Plot: GRB170817A
YouTube video by LIGO Virgo KAGRA
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Francis O'Reilly @fjoreilly.bsky.social · 14/08/2026
PhIX-MS is out in Molecular Cell! Rapid in situ photo-crosslinking traps transient proteasome interactions before purification; crosslinking MS, cryo-EM and AlphaFold tell us where they bind. Paper: doi.org/10.1016/j.mo... Preview: doi.org/10.1016/j.mo...
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 13/08/2026
WOAH 👀🧪 "we show that eukaryotic chromosomes are ionic hydrogels and that the chromosomal material is a two-state system, with interconversion between condensed and decondensed states through a volume phase transition, analogous to a liquid-gas transition" www.science.org/doi/10.1126/...
science.org
The eukaryote chromosome, a two-state system with interconversion by a volume phase transition
The formation of metaphase chromosomes requires the activity of condensins, DNA translocases that reduce chromosomal length through the process of loop extrusion. Reduction of length, however, does no...
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Stella Hurtley @smhsci.bsky.social · 12/08/2026
Last week in @science.org A molecular switch for coordinating kinesin and dynein transport of mitochondrial cargo | Science www.science.org/doi/10.1126/...
science.org
A molecular switch for coordinating kinesin and dynein transport of mitochondrial cargo
The cellular distribution of mitochondria in response to stress and local energy needs is governed by the relative activities of the microtubule-based molecular motors kinesin and dynein. The mechanis...
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Marko Kaksonen @kaksonen.bsky.social · 11/08/2026
Endocytic clathrin coats are surprisingly dynamic: triskelia turn over in seconds. How is the turnover regulated and what is it for? Read Anne-Laure Boinet's preprint with @rouxlab.bsky.social www.biorxiv.org/content/10.6...
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Jeremy Baskin @jeremybaskin.bsky.social · 06/08/2026
Thrilled to share our new work, co-developed w/Adrian Salic's lab: bioorthogonal probes for labeling PE, a multifunctional membrane lipid and source of important protein modifications. Congrats to Yuan-Ting Cho, Brittany White-Mathieu, Jade Xia, & Cindy Jao! onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Bioorthogonal Tools for Ethanolamine Lipids and Protein Conjugates
An alkyne-tagged ethanolamine analog (AlkEA) enables bioorthogonal, metabolic labeling of endogenous phosphatidylethanolamine (PE) and its protein modifications. AlkEA is incorporated into PE via the...
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The New York Times @nytimes.com · 06/08/2026
The 50 best thriller books of the 21st century as voted on by 291 crime novelists, editors, booksellers, librarians and other book lovers. See how their ballots stack up.
nyti.ms
The 50 Best Thriller Books of the 21st Century
Hundreds of novelists, librarians, editors and other book lovers voted. See how their ballots stack up.
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Cell Biology J-Club @cellclub.bsky.social · 30/07/2026
Golgi CATCHR complexes function as organizing hubs for vesicle tethering and fusion www.biorxiv.org/content/10.6...
biorxiv.org
Golgi CATCHR complexes function as organizing hubs for vesicle tethering and fusion
Approximately one-third of all human proteins transit through the secretory pathway, where the Golgi apparatus orchestrates protein modification, sorting, and distribution through highly selective ves...
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Science Magazine @science.org · 26/07/2026
A controversial claim challenges the principle of cosmological sameness on which the prevailing theory currently rests. Learn more: scim.ag/4gaSKzf
The universe is unexpectedly stringy, which could unravel the theory of the cosmos.
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Teng-Leong Chew @scopeshifu.bsky.social · 15/07/2026
🧪 @aicjanelia.bsky.social and @scientistrachel.bsky.social have just published a new quantitative tool, OpticalFlow3D, for tracking amorphous motion in 3D. Try it out and let us know what you think! tinyurl.com/OpticalFlow3D
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Josh Currie @joshcurrie.bsky.social · 13/07/2026
I love these funky basal epithelial cells in axolotl. Looks just like plant pavement cells
basal squamous epithelial cells in the axolotl expressing a membrane-localized fluorescent protein
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Nature @nature.com · 08/07/2026
Nature research paper: An intrinsic cytoskeletal oscillator establishes neuronal polarity go.nature.com/4p9dWbh
go.nature.com
An intrinsic cytoskeletal oscillator establishes neuronal polarity - Nature
The ARP2/3 complex works together with actomyosin in an oscillatory program at the soma to govern neuronal polarization.
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UCL Faculty of Life Sciences @ucllifesciences.bsky.social · 08/07/2026
New research from @fpichaud.bsky.social and University of Seville researchers found that developing fruit fly retinas behave like metamaterials, folding from flat cellular patterns into precise 3D structures. www.ucl.ac.uk/life-science... #UCLLifeSciences #Biomaterials #Metamaterials
ucl.ac.uk
Fly eyes reveal nature's blueprint for metamaterials
Scientists have discovered that fly eyes develop as natural programmable metamaterials, revealing an "origami" blueprint that could inspire biomaterials, tissue engineering and regenerative medicine.
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Nature @nature.com · 18/06/2026
Embryonic ‘organizer cells’ can tell embryos of various phyla what kind of body to build go.nature.com/4vnO1ig
go.nature.com
Cell transplant across the tree of life hints at how animals emerged
Embryonic ‘organizer cells’ can tell embryos of various phyla what kind of body to build.
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Pawel Burkhardt @pawelburkhardt.bsky.social · 16/06/2026
How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...
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Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 08/06/2026
New Online! DNA voyages through intercellular tunnels
dlvr.it
DNA voyages through intercellular tunnels
Nature Reviews Molecular Cell Biology, Published online: 08 June 2026; doi:10.1038/s41580-026-00987-9This study shows that genomic DNA in the cytoplasm can transfer between mammalian cells through nanotube-like structures, integrate into the genome of recipient cells and support gene expression.
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Philip Ball @philipcball.bsky.social · 30/05/2026
I have read and enjoyed The Paradox of the Organism by @arvidagren.bsky.social and Manus Patten. I had a lot of thoughts about it, and about selfish genes. Here they are, in a long blog post. homunculusmusic.wordpress.com/2026/05/30/i...
homunculusmusic.wordpress.com
Is the organism a paradox?
I’m reading The Paradox of the Organism, a set of collected essays on this notion edited by Arvid Ågren and Manus M. Patten. It’s tremendously enlightening. It is also pretty consistent with the st…
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Thiago Carvalho @cyrilpedia.bsky.social · 31/05/2026
'If a control experiment fails, does that mean that the entire experiment is poorly designed and you must restart from scratch? Often, yes— but not always. I present five examples where failed control experiments triggered entirely new fields of research.' link.springer.com/article/10.1...
link.springer.com
The controls that got out of control - EMBO Reports
EMBO Reports - When experimental controls go wrong, it does not necessarily mean your experiment is flawed. It might well be the first sign of something unexpected.
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Claire Pomeroy @drclairepomeroy.bsky.social · 22/05/2026
🐭 Female mice develop male genitals when researchers modified both copies of non-coding Enh13, which controls Sox9 gene responsible for testes development in male mice. This suggests Enh13 acts as an enhancer and a silencer of Sox9, per Nature Communications study. #SciSky #MedSky 🧪
nature.com
Female mice grow testes after this single DNA tweak
Small changes in the non-coding part of the genome have a key role in sex determination.
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Keri Backus @keribackus.bsky.social · 03/05/2026
Super excited to launch POCAxOMAP with @dschweppe.bsky.social and @oligopain.bsky.social and led by Eli Biletch, Conor Herlihy and Lidan Li. If you’ve ever wanted to do proximity labeling on DNA, RNA, or protein without genetic engineering, look no further. www.biorxiv.org/content/10.6...
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Science Friday @scifri.bsky.social · 20/04/2026
You've never seen human anatomy like this before. Using a particle accelerator, the Human Organ Atlas is producing 3D scans of our organs in unprecedented detail! You can look through different layers of tissue and even zoom in on the cells for the heart, lungs, eyes, kidneys, and more.
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Luke Lavis @rhodamine110.bsky.social · 15/04/2026
Out in @natmethods.nature.com: More dyes. They work. Quite well. And blink. Pick the one that fits your target, your technique, and your labeling density. With too many collaborators and institutes to list, but anchored at @hhmijanelia.bsky.social www.nature.com/articles/s41...
nature.com
A series of spontaneously blinking dyes for super-resolution microscopy - Nature Methods
A series of spontaneously blinking dyes in the far-red range facilitate single-molecule localization microscopy. These dyes vary in their blinking properties and can be matched to the applications and...
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Juan C. Landoni @jclandoni.bsky.social · 05/04/2026
Check out the fantastic perspective by @jellevda.bsky.social & @prudentlab.bsky.social on our #pearling work, out in the same @science.org issue! www.science.org/doi/10.1126/...
science.org
Mitochondrial genomes on a string of pearls
Transient membrane constrictions, or “pearling,” underlie the regular spacing of mitochondrial genomes
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Joachim Goedhart @joachimgoedhart.bsky.social · 20/03/2026
A Sensitive Green-Red FRET Sensor for Calpain-1 Utilizing Heterodimeric Fluorescent Proteins from Distinct Evolutionary Origins pubs.acs.org/doi/full/10....
pubs.acs.org
A Sensitive Green-Red FRET Sensor for Calpain-1 Utilizing Heterodimeric Fluorescent Proteins from Distinct Evolutionary Origins
Calpain-1, a calcium-dependent cysteine protease, plays a pivotal role in various biological functions. However, real-time monitoring of its activity has been limited by the lack of high-performance calpain sensors. Here, we report the development of iFoCAL, a sensitive and specific fluorescence resonance energy transfer (FRET) sensor for calpain-1, which employs mClover3 and mScarletX, a newly engineered green-red FRET pair with weak interactions. Using iFoCAL, we revealed distinct spatiotemporal patterns of calpain-1 activation: gradual and global activation in whole cells during endoplasmic reticulum (ER) calcium release, fast and focal activation in axons during mechanical stress, and region-specific activation in a Parkinson’s disease model. These findings provide the first direct evidence of distinct calpain-1 dynamics across diverse cellular contexts.
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James Briscoe @jamesbriscoe.bsky.social · 09/03/2026
New Perspective form Rory Maizels & me: "Gene regulatory networks: from correlative models to causal explanations" Gene regulatory networks are supposed to give us mechanistic explanations of development, so why are we drowning in 'hairballs' of statistical correlations? rdcu.be/e7zx7
rdcu.be
Gene regulatory networks: from correlative models to causal explanations
Nature Reviews Genetics - In this Perspective, Maizels and Briscoe discuss the limitations of current models of gene regulatory networks and outline solutions to harness data abundance without...
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Aurele Piazza @aurelepiazza.bsky.social · 09/03/2026
We just published a short conceptual review together with @angela-taddei.bsky.social on the spatial controls of homology search in both bacteria and eukaryotes. We discuss an emerging framework for homology search in cells with two main phases. Check it out: authors.elsevier.com/c/1mjyh,LqAZ...
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The Transmitter @thetransmitter.bsky.social · 27/02/2026
Dendritic arbors provide neuroscience with an ideal opportunity to study how individual neurons interact with their broader circuitry and are the field’s best bet to bridge cellular and systems neuroscience, writes @justinkohare.bsky.social. #neuroskyence www.thetransmitter.org/dendrites/de...
thetransmitter.org
Dendrites help neuroscientists see the forest for the trees
Dendritic arbors provide just the right scale to study how individual neurons reciprocally interact with their broader circuitry—and are our best bet to bridge cellular and systems neuroscience.
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 16/09/2024
Very nice article by Danielle Gerhard in The Scientist on “The Dynamic Lives of Intrinsically Disordered Proteins” with quotes from Gabi Heller, @alexholehouse.bsky.social and myself about our shared love of and fascination with these proteins www.the-scientist.com/the-dynamic-...
the-scientist.com
The Dynamic Lives of Intrinsically Disordered Proteins
Shapeshifting proteins challenge a long-standing maxim in biology.
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Cell Biology J-Club @cellclub.bsky.social · 05/02/2026
www.nature.com/articles/s41...
nature.com
Stabilized real-time Brillouin microscopy reveals fractal organization of protein condensates in living cells - Nature Communications
Testi and colleagues introduce an enhanced Brillouin Microscope for user-independent and high-precision mechanical measurements. Using this approach, the authors obtained insight into the biophysical ...
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David Balchin @davidbalchin.bsky.social · 19/01/2026
Our latest cotranslational folding story is now published @cp-molcell.bsky.social. Really cool (I think) new ideas about how exactly the ribosome directs folding and assembly to make sure complicated proteins mature efficiently in cells. www.cell.com/molecular-ce...
cell.com
The ribosome synchronizes folding and assembly to promote oligomeric protein biogenesis
Large oligomeric proteins constitute a major fraction of proteomes, but are difficult to refold in vitro, raising the question of how cells direct their biogenesis. Roeselová and Shivakumaraswamy et a...
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