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Doudna Lab

@doudna-lab.bsky.social
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News from Jennifer Doudna's lab at UC Berkeley, Innovative Genomics Institute. Tweets from lab members and not Jennifer Doudna unless signed JD. Tweets represent personal views only. doudnalab.org

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Kenneth Loi @kenjmloi.bsky.social · 18/09/2026
VIPR is now out in Science! What started with a mysterious RNA led us to an unexpected way of recognizing DNA, as well as some clues to CRISPR’s origins. So happy to share these two papers with an incredible team. Links below; original discovery thread here ↓
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Kenneth Loi @kenjmloi.bsky.social · 18/09/2026
Pretty surreal to see our work in The New York Times. Thank you, Carl Zimmer, for sharing the story of VIPR! www.nytimes.com/2026/09/17/s...
nytimes.com
The Next Gene-Editing Technology May Also Be the Oldest (Gift Article)
Scientists have discovered a powerful gene-targeting system in viruses. Billions of years old, VIPR seems to predate CRISPR and may be even more effective.
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Doudna Lab @doudna-lab.bsky.social · 19/09/2026
Out now in Science: Two papers from our lab reveal VIPR, an RNA-guided DNA-targeting system in bacteriophages, providing clues to the origins of CRISPR www.science.org/doi/10.1126/... www.science.org/doi/10.1126/... Congrats to Peter Yoon, @kenjmloi.bsky.social @terryzzy.bsky.social, T.Docter & team
science.org
A noncontiguous code for RNA-guided DNA recognition at the origin of CRISPR-Cas
CRISPR-Cas provides RNA-mediated adaptive immunity, but how its first RNA-guided effector arose is unclear. In this study, we report the discovery of Viral Interference Programmable Repeat (VIPR) syst...
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Conner Langeberg @clangeberg.bsky.social · 05/09/2026
RNA structure prediction lags behind proteins for lack of data. RNASSTR, our new dataset, offers millions of RNA sequence-secondary structure pairs, split structurally to avoid train/test leakage. 📄 doi.org/10.1261/rna.... 📰 innovativegenomics.org/news/ai-mode...
doi.org
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Erin Doherty @erinedoherty.bsky.social · 31/08/2026
I'm very excited to share that this January, I’ll be joining Columbia University’s Department of Biological Sciences as a tenure-track Assistant Professor 🏙️🦁🍎 @columbiauniversity.bsky.social 🧬 Learn more: dohertylab.org Thank you to all those who supported me along the way!
dohertylab.org
Doherty lab at Columbia University | immune signaling | Sherman Fairchild Center, 1212 Amsterdam Ave, New York, NY 10027, USA
We treat viral antagonism as a discovery tool for host biology to reveal fundamental mechanisms of immune signaling and new opportunities for therapeutic intervention.
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Nature Biotechnology @natbiotech.nature.com · 31/07/2026
Research Highlight: An RNA-guided ‘chromatin shredder’ for selective cell killing www.nature.com/articles/s41...
nature.com
An RNA-guided ‘chromatin shredder’ for selective cell killing - Nature Biotechnology
Nature Biotechnology - An RNA-guided ‘chromatin shredder’ for selective cell killing
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Evan DeTurk @evandeturk.bsky.social · 20/08/2026
Finally managed to get my hands on a physical copy of this! Great to see in our paper literally in print
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Doudna Lab @doudna-lab.bsky.social · 06/08/2026
The latest work from the lab now out in @cp-molcell.bsky.social! New mechanistic insights into TnpB DNA unwinding and hypercompact plant genome editors🌱 Congratulations to leads @zehanzhou.bsky.social, Iren Saffarian, @honglue.bsky.social, Trevor Weiss & team, and Jacobsen, Savage and Bryant labs
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Nature @nature.com · 17/07/2026
Scientists have harnessed AI models to create synthetic CRISPR proteins that edit the genome more efficiently than those seen in nature go.nature.com/4f8AN3n
go.nature.com
CRISPR gets a power boost from AI-designed ‘molecular scissors’
Researchers used artificial intelligence to design functional CRISPR enzymes not seen in nature.
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Science Magazine @science.org · 22/07/2026
In a new Science study, researchers report the design of synthetic RNA-guided nucleases that match or exceed the activity of natural enzymes, revealing how structure-guided design can generate functional genome-editing proteins with substantially different sequences. scim.ag/45fbSFf
scim.ag
Structure and evolution-guided design of minimal RNA-guided nucleases
The design of RNA-guided nucleases with properties not limited by evolution can expand programmable genome-editing capabilities. However, generating diverse multidomain proteins with robust enzymatic ...
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Doudna Lab @doudna-lab.bsky.social · 22/07/2026
First preprint from the lab of postdoc alumni @jnoms.bsky.social. Check it out!
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Jason Nomburg @jnoms.bsky.social · 22/07/2026
Happy to share the first preprint out of the Nomburg lab! Many aspects of cellular immunity are shared across the tree of life. Here, we show that some of these conserved aspects of cellular immunity are mirrored by conserved effectors of immune antagonism. Thread below! 1/15
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Bel Esain @isabelesain.bsky.social · 17/07/2026
So excited to see our paper out in Science! Beyond grateful to my co-leads @petrskopintsev.bsky.social @evandeturk.bsky.social, all co-authors & collaborators, everyone in Doudna lab, and @innovativegenomics.bsky.social Being EsAIn in the DouDNA lab, it couldn't have been any other way ✨
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Petr Skopintsev @petrskopintsev.bsky.social · 17/07/2026
Proud to present our work, published today in @science.org! My deepest gratitude to @isabelesain.bsky.social, @evandeturk.bsky.social, Jennifer and our collaborators in the Doudna, Cate, Banfield, and Jacobsen labs, and the @innovativegenomics.bsky.social! I hope you enjoy reading it! ✨
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Innovative Genomics Institute @innovativegenomics.bsky.social · 16/07/2026
Out today in @science.org, Doudna lab researchers describe an #AI-assisted method for designing enhanced genome editors, testing close to 2000 in lab. Read more: innovativegenomics.org/news/ai-desi...
innovativegenomics.org
AI-Assisted Technique Allows Scientists to Design New, Functional Genome Editors Beyond What Can Be Found in Nature
AI-Assisted Technique Allows Scientists to Design New, Functional Genome Editors Beyond What Can Be Found in Nature - Innovative Genomics Institute (IGI)
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Doudna Lab @doudna-lab.bsky.social · 16/07/2026
Our AI-guided design of RNA-guided nucleases is now out in @science.org 💻🧬 We used structure and evolutionary data to generate minimal, active and divergent gene editors! www.science.org/doi/10.1126/... Congrats to @petrskopintsev.bsky.social @isabelesain.bsky.social @evandeturk.bsky.social & team!
science.org
Structure and evolution-guided design of minimal RNA-guided nucleases
The design of RNA-guided nucleases with properties not limited by evolution can expand programmable genome-editing capabilities. However, generating diverse multidomain proteins with robust enzymatic ...
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Waggoner Lab @labwaggoner.bsky.social · 08/06/2026
Targeting Cancer-Specific Mutations with RNA-Triggered Chromatin Shredding @nature.com @doudna-lab.bsky.social @gladstoneinst.bsky.social @jingkunzeng.bsky.social www.nature.com/articles/s41...
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Gladstone Institutes @gladstoneinst.bsky.social · 10/06/2026
A team led by Jennifer Doudna developed an innovative chromatin-shredding technique shown to destroy cancer cells carrying a prevalent mutation while keeping healthy cells intact. @doudna-lab.bsky.social @innovativegenomics.bsky.social @ucsanfrancisco.bsky.social @ucberkeleyofficial.bsky.social
gladstone.org
New CRISPR Technique Selectively Shreds Cancer Cells, Including Those of ‘Undruggable’ Cancers
An innovative chromatin-shredding technique shown to destroy cancer cells carrying a prevalent mutation while keeping healthy cells intact.
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Doudna Lab @doudna-lab.bsky.social · 24/06/2026
Huge congratulations to Doudna Lab postdoc, Santiago!
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Doudna Lab @doudna-lab.bsky.social · 09/06/2026
We now present our latest work, now out in @nature.com! A creative new CRISPR-based approach can selectively destroy cells carrying undruggable mutations in cancer. Work led by @jingkunzeng.bsky.social In collaboration with Alan Ashworth, Yang Liu and Ryan Jackson. www.nature.com/articles/s41...
nature.com
Targeting Cancer-Specific Mutations with RNA-Triggered Chromatin Shredding - Nature
Nature - Targeting Cancer-Specific Mutations with RNA-Triggered Chromatin Shredding
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Doudna Lab @doudna-lab.bsky.social · 12/05/2026
New pre-print 📣 “Undruggable” cancer mutations remain very hard to target with current modalities. What if we could instead sense mutant transcripts and convert that recognition into selective cell killing? Check out this work led by postdoc Jingkun Zeng: www.biorxiv.org/content/10.6...
biorxiv.org
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Cress Lab @cresslab.bsky.social · 30/04/2026
Our lab is proud to present our latest work harnessing Bridge Recombinase for genome-scale editing in diverse bacteria, microbiome editing, and programmable horizontal gene transfer.
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Doudna Lab @doudna-lab.bsky.social · 27/04/2026
We present VIPR, a phage-encoded RNA-guided system that recognizes DNA with a noncontiguous code unlike CRISPR. Tiny, programmable, possibly ancestral to CRISPR immunity; VIPR is built around a striking RNA-DNA-DNA triplex.
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Fletcher Lab @fletcherlabucb.bsky.social · 02/04/2026
In our new work published in @natbiomedeng.nature.com in collaboration with @theottlab.bsky.social and @doudna-lab.bsky.social, we introduce "interfering" guide RNAs (igRNA) for CRISPR-Cas13a that regulate enzyme activity after activation. Congrats to all the authors! www.nature.com/articles/s41...
nature.com
Programmable kinetic barcoding for multiplexed RNA detection with Cas13a - Nature Biomedical Engineering
A multiplexed RNA detection method exploits crRNA-dependent variability in Cas13a activity on RNA targets for kinetic barcoding and can be used to distinguish among SARS-CoV-2 variants in clinical sam...
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Michael Le Page @mjflepage.bsky.social · 12/02/2026
A big challenge for CRISPR gene editing 🧬 is altering a high enough proportion of target cells in the body 🧪 So @doudna-lab.bsky.social have developed editors that can amplify themselves by spreading from cell to cell Comment from @gaetanburgio.bsky.social www.newscientist.com/article/2514...
newscientist.com
Gene editing that spreads within the body could cure more diseases
The idea of self-amplifying gene editing is to get cells to pass on packages of CRISPR machinery to their neighbours, boosting the effect
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The Kavli Prize @kavliprize.bsky.social · 04/03/2026
Congratulations to Jennifer Doudna, 2018 #KavliPrize Nanoscience Laureate and CRISPR pioneer, for her recent election to the National Academy of Engineering! She's now one of a few people elected to all three academies @nationalacademies.org. Learn more: bit.ly/4s4k98m @doudna-lab.bsky.social
bit.ly
Five UC Berkeley faculty elected to National Academy of Engineering - Berkeley News
A chemical engineer, an electrical engineer, a biochemist, a roboticist and a laser dynamicist are among the new members.
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UC Berkeley MCB @berkeleymcb.bsky.social · 12/03/2026
Today’s the day to make a BIG impact for the MCB community! 🌟 MCB faculty share—in their own words—why our initiatives matter. @doudna-lab.bsky.social @hariharanlab.bsky.social ✅ Read about our goals bit.ly/BigGiveMCB26goals ✅ Click 🔗 bit.ly/BigGiveMCB26 to donate
 "I believe a strong department is built on a culture where people feel supported and included. These investments help retain talent, foster collaboration, and support the next generation of scientists." Laurent Coscoy"Supporting basic research — and research training — is more important today than ever. Academic research is the engine of discovery for the world, and by supporting student research opportunities, we are developing the skills and minds that will lead the way for future breakthroughs." Jennifer Doudna"The MCB Department has played a key role in what are arguably the two most impactful discoveries in biomedicine in the 21st century- checkpoint blockade immunotherapy and CRISPR/Cas9-based gene editing. We want to give our undergraduates the best chance of participating in our next big discoveries.: Iswar Hariharan
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Doudna Lab @doudna-lab.bsky.social · 27/01/2026
🚀 New preprint! @jacobsenucla.bsky.social x @doudna-lab.bsky.social collaboration: High-activity TnpB (Ymu1-WFR) + a multi-gRNA system in TRV enables heritable, tissue-culture-free multiplex editing in plants. Big potential for plant biotech 🧬🌾🌱 doi.org/10.64898/202...
doi.org
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Zehan Zhou @zehanzhou.bsky.social · 15/01/2026
How do the ancestors of CRISPR-Cas unwind DNA and how can this lead to better genome editing? With our collaboration between @doudna-lab.bsky.social x @jacobsenucla.bsky.social x Zev Bryant's lab x @savagecatsonly.bsky.social we've uncovered the secrets behind TnpB's dynamics!
biorxiv.org
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Innovative Genomics Institute @innovativegenomics.bsky.social · 13/01/2026
Check out the latest episode of Rewriting the Code, featuring Jennifer Doudna and #SickleCell patient pioneer Victoria Gray who was cured with a #CRISPR-based treatment in a groundbreaking clinical trial: ow.ly/t6FY50XVNO7
Victoria Gray
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Nature Biotechnology @natbiotech.nature.com · 12/01/2026
Targeted delivery of genome editors in vivo - @doudna-lab.bsky.social @innovativegenomics.bsky.social go.nature.com/4qKp6Tb
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Doudna Lab @doudna-lab.bsky.social · 10/01/2026
New preprint 👉Doudna x Bryant x Jacobsen x Savage collaboration! Work led by @zehanzhou.bsky.social, I. Saffarian-Deemyad, @honglue.bsky.social, T. Weiss We dissect how stepwise DNA unwinding gates TnpB genome editing, revealing how unwound DNA states enhance cleavage www.biorxiv.org/content/10.6...
biorxiv.org
Stepwise DNA unwinding gates TnpB genome-editing activity
TnpB is a compact RNA-guided endonuclease and evolutionary ancestor of CRISPR-Cas12 that offers a promising platform for genome engineering. However, the genome-editing activity of TnpBs remains limit...
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Innovative Genomics Institute @innovativegenomics.bsky.social · 05/01/2026
New in Science Magazine Science Advances from the Doudna Lab, Rubin Lab and Cress Lab —Identification of proteins influencing #CRISPR-associated #transposases for enhanced #GenomeEditing. Read here: ow.ly/U0s450XS82n
Fig. 5. Phylogenetic distribution of VchCAST activator and inhibitor genes.
The phylogenetic distribution of 11 E. coli regulatory genes was mapped across 80,789 representative bacterial genomes from 92 phyla in Genome Taxonomy Database, release 214.0 (GTDB version 214.0) (72, 73), with at least 10 members. Homologs were identified using AnnoTree (60) and confirmed with the eggNOG database (70).
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Amanda Alker @atp-alker.bsky.social · 05/01/2026
During my postdoc in @therubinlab.bsky.social, @leosong.bsky.social and I aimed to make CRISPR-associated transposons more efficient for editing bacteria. Couldn’t have done it w/o a CAST of characters at IGI and beyond @innovativegenomics.bsky.social, @cresslab.bsky.social, @doudna-lab.bsky.social
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Innovative Genomics Institute @innovativegenomics.bsky.social · 16/12/2025
🎺New paper alert🎺 Out now in Nature Chemical Biology from IGI's Jennifer Doudna (Doudna Lab) and collaborators: Temporal photoproximity labeling of ligand-activated EGFR neighborhoods using MultiMap Read here: ow.ly/izGo50XAkog
ow.ly
Temporal photoproximity labeling of ligand-activated EGFR neighborhoods using MultiMap - Nature Chemical Biology
A multiscale photoproximity labeling proteomics workflow captures dynamic neighborhoods of extracellular and intracellular epidermal growth factor (EGF) receptor interactomes during early, middle and late signaling upon activation by EGF.
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Evan DeTurk @evandeturk.bsky.social · 09/12/2025
Excited to share our work designing genome editors with machine learning! 🧬💻 Huge thanks to @petrskopintsev.bsky.social @isabelesain.bsky.social @doudna-lab.bsky.social and all co-authors. Check out the thread for a summary of what we found 👇
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Erin Doherty @erinedoherty.bsky.social · 10/12/2025
A very nice Preview of our work in @cp-cellhostmicrobe.bsky.social this morning from Chrishan Fernando & Nicole D. Marino! www.cell.com/cell-host-mi...
cell.com
Viral enzymes degrade to evade
Across all domains of life, immune systems rely on nucleotide-based signaling molecules to activate defense responses. In a recent Cell Host & Microbe study, Doherty, Nomburg, and colleagues identify ...
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Innovative Genomics Institute @innovativegenomics.bsky.social · 10/12/2025
Congrats to IGI's Jill Banfield, Jennifer Doudna, Mary Firestone, Patrick Hsu, Alex Marson, Kris Niyogi, Eva Nogales, Dan Nomura, and Jennifer Puck — each is on Clarivate's Highly Cited Researchers 2025 list for ranking in the top 1% in their field by citations!
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Petr Skopintsev @petrskopintsev.bsky.social · 09/12/2025
Excited to share our first work on protein design! Huge thanks to the entire team, and especially to Bel, Evan, to the Doudna, Jacobsen, Cate, Banfield labs, all co-authors, and my D-lab mates! 💫
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Bel Esain @isabelesain.bsky.social · 09/12/2025
First co-led work from the Doudna lab 🤜🤛 We designed minimal RNA-guided nucleases with AI, and even did Cryo-EM during an earthquake (!) Huge honor working with @petrskopintsev.bsky.social, @evandeturk.bsky.social, Jennifer Doudna and co-authors, everyone at D-Lab and @innovativegenomics.bsky.social
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Doudna Lab @doudna-lab.bsky.social · 09/12/2025
✨New preprint! 🧵1/4 Excited to share our work on AI-guided design of minimal RNA-guided nucleases. Amazing work by @petrskopintsev.bsky.social @isabelesain.bsky.social @evandeturk.bsky.social et al! Multi-lab collaboration @banfieldlab.bsky.social @jhdcate.bsky.social @jacobsenucla.bsky.social🧬 🔗👇
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Indigo V. L. Rose @ivlrose.bsky.social · 06/12/2025
Career update: I'm happy to say that I've accepted a postdoc position at UC Berkeley at @innovativegenomics.bsky.social in Jennifer Doudna's lab! I'm looking forward to this exciting new chapter of my scientific career!
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Rubin Lab @therubinlab.bsky.social · 02/12/2025
We're excited to share our lab's first lead paper! We developed OriGen, a language model trained to generate plasmid origins of replication. 🔄🦠 The model generates sequences that are significantly different from wild type origins and, remarkably, they allow for replication in vivo. Read it here ⬇️
academic.oup.com
Validate User
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Innovative Genomics Institute @innovativegenomics.bsky.social · 25/11/2025
1/2 New from co-first authors @erinedoherty.bsky.social and @jnoms.bsky.social of the @doudna-lab.bsky.social — Bacteria fight off viruses using tiny molecular “alarm signals” made of nucleotides. To survive, viruses must find ways to shut these signals down.
innovativegenomics.org
New Method Uncovers How Viruses Evade Immune Responses — and How We Might Fight Back
Explore how viruses evade immune responses by developing enzymes that disrupt molecular alarm signals in host cells.
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Jason Nomburg @jnoms.bsky.social · 20/10/2025
My lab is hiring postdocs! We combine AI, protein structure prediction and comparison, and high-throughput virology to study the virus-host conflict. You can read more about my lab's research here: jasonnomburg.com/research/ Apply here to join us in lovely Vienna! aithyra.onlyfy.jobs/job/0khkxp82
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Jason Nomburg @jnoms.bsky.social · 25/11/2025
So happy to see this work out! Was such a pleasure to co-lead this effort with Erin. Do you like viral immune evasion, and using protein structure to study immune antagonists? Give it a read!
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Erin Doherty @erinedoherty.bsky.social · 25/11/2025
Work I co-led with @jnoms.bsky.social is now online at @cp-cellhostmicrobe.bsky.social ! We revealed a previously unrealized diversity of viral immune-evasion proteins that selectively destroy different cyclic nucleotide signals used in bacterial immunity. www.sciencedirect.com/science/arti...
sciencedirect.com
Divergent viral phosphodiesterases for immune signaling evasion
Cyclic dinucleotides (CDNs) and other short oligonucleotides play fundamental roles in immune system activation in organisms ranging from bacteria to …
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Doudna Lab @doudna-lab.bsky.social · 25/11/2025
Now online at @cp-cellhostmicrobe.bsky.social from co-first authors @erinedoherty.bsky.social & @jnoms.bsky.social
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Innovative Genomics Institute @innovativegenomics.bsky.social · 18/11/2025
New in Science Magazine from the Doudna Lab and first author Owen Tuck: Recurrent acquisition of nuclease-protease pairs in antiviral immunity. Read here: ow.ly/pIWQ50XtEtM
ow.ly
Recurrent acquisition of nuclease-protease pairs in antiviral immunity
Antiviral immune systems diversify by integrating new genes into existing pathways, creating new mechanisms of viral resistance. We identified genes encoding a predicted nuclease paired with a trypsin-like protease repeatedly acquired by multiple, ...
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Innovative Genomics Institute @innovativegenomics.bsky.social · 14/11/2025
New from the @doudna-lab.bsky.social and first author @owentuck.bsky.social!
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