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Luke Lavis

@rhodamine110.bsky.social
1.3K followers 104 following 47 posts

Chemist at HHMI's Janelia Research Campus. Passionate about designing, building, and giving away fluorescent dyes to illuminate biological systems. Striving to be positive about all things chemistry (except ChemDraw). ORCID: 0000-0002-0789-6343

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Luke Lavis @rhodamine110.bsky.social · 20/08/2026
Claude can now do a Fourier transform of a (proprietary?) FID in [checks notes] 23 minutes. NUTS! www.anthropic.com/research/Cla...
anthropic.com
How Claude is accelerating protein design and analytical chemistry
In this post, we share two results that show how Claude can help life scientists increase the pace of their research. In the first, we tested Claude’s ability to design protein binders from scratch, a...
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Luke Lavis @rhodamine110.bsky.social · 17/07/2026
Excited to see this collaboration now in print. Dye chemistry meets AI-designed proteins. Three small, orthogonal tags; lifetime modulation; split versions. Request the free dyes at dyes.janelia.org www.science.org/doi/10.1126/...
science.org
De novo design of orthogonal far-red, orange, and green fluorophore-binding proteins for multiplexed imaging
Fluorescent proteins and small-molecule dyes offer complementary advantages for biological imaging: proteins are amenable to genetic tagging, whereas dyes provide superior brightness and photostabilit...
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Luke Lavis @rhodamine110.bsky.social · 15/07/2026
Is this satire?
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Mark Peifer (He, him) @peiferlabunc.bsky.social · 23/06/2026
OK--is this satire??? The fact that we can't tell anymore is..... inpreparation.substack.com/p/opinion-i-...
inpreparation.substack.com
Opinion: I Was Not Allowed To Type Prompts Into ChatGPT During My Chalk Talk And This Is Discrimination
By Dr. Rachel Simmons, Postdoctoral Fellow, Stanford University
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Luke Lavis @rhodamine110.bsky.social · 15/04/2026
Out in @natmethods.nature.com: More dyes. They work. Quite well. And blink. Pick the one that fits your target, your technique, and your labeling density. With too many collaborators and institutes to list, but anchored at @hhmijanelia.bsky.social www.nature.com/articles/s41...
nature.com
A series of spontaneously blinking dyes for super-resolution microscopy - Nature Methods
A series of spontaneously blinking dyes in the far-red range facilitate single-molecule localization microscopy. These dyes vary in their blinking properties and can be matched to the applications and...
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Luke Lavis @rhodamine110.bsky.social · 24/03/2026
The best two years you can spend before graduate school! Get the hands of a 4th-year grad student contributing to Open Science: bit.ly/47mU5xx Or join an interdisciplinary AI/biology team (don't worry, the AI still needs you to do the actual experiments): bit.ly/4taqzni Both at Janelia!
bit.ly
Research Technician - Tool Translation Team
Primary Work Address: 19700 Helix Drive, Ashburn, VA, 20147 Current HHMI Employees, click here to apply via your Workday account. Summary: We are seeking a chemist to join the Tool Translation Team, "...
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Keri Backus @keribackus.bsky.social · 06/02/2026
Excited to share our new paper and lipid- and protein-directed photocatalytic labeling method (POCA) just out in @natchembio.nature.com. tinyurl.com/2kcxuvvv. Big congrats to first author Andrew Becker and the whole team for launching our lab into the wild world of singlet oxygen interactomics.
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adamezracohen.bsky.social @adamezracohen.bsky.social · 04/01/2026
Thanks, as always, to @rhodamine110.bsky.social for hooking us up with buckets of JaneliaFluor-HaloTag ligand dyes.
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adamezracohen.bsky.social @adamezracohen.bsky.social · 04/01/2026
What is the computational role of dendritic excitations? Byung Hun Lee and team mapped voltage dynamics throughout the dendritic trees of CA1 pyramidal neurons in mice navigating in virtual reality. www.biorxiv.org/content/10.6...
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Luke Lavis @rhodamine110.bsky.social · 14/11/2025
Got the last word in this great perspective on the state of fluorescent indicators in @nature.com by @dianakwon.bsky.social www.nature.com/articles/d41...
nature.com
How genetically encoded sensors have lit up neuroscience
Tools that track specific molecules in neurons have enabled researchers to probe previously unexplored aspects of neurobiology — although important caveats remain.
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Bryan Dickinson @chembiobryan.bsky.social · 11/11/2025
Registration for THE chemical biology conference of 2026 is now open! EMBO ChemBio 2026 in Heidelberg DeGrado, Arikin, Picotti (Keynotes). @lmkdassama.bsky.social @brianliau.bsky.social @rhodamine110.bsky.social @benlehner.bsky.social @alitavassoli.bsky.social www.embl.org/about/info/c...
embl.org
Chemical biology 2026
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Luke Lavis @rhodamine110.bsky.social · 11/11/2025
Cool paper using a new JF derivative to map synaptic proteins. And AI didn't like the generality of our general synthetic methods section (that we've used for years), so we expanded them from 2 succinct paragraphs to 1.5 gloriously unreadable pages. Better than Ambien. www.nature.com/articles/s41...
nature.com
Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain - Nature Communications
Synapses are diverse within a single neuron. Here, the authors present a method for single-cell synaptome imaging of endogenous protein subpopulations in the mouse brain, enabling spatial mapping of s...
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Luke Lavis @rhodamine110.bsky.social · 07/11/2025
Found it!
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Luke Lavis @rhodamine110.bsky.social · 06/11/2025
A fantastic paper by my @hhmijanelia.bsky.social colleague and friend Heejun Choi (who is on the job market!). Another elegant use of the Janelia Fluor dyes for cellular imaging. www.nature.com/articles/s41...
nature.com
Secretome translation shaped by lysosomes and lunapark-marked ER junctions - Nature
Live-cell imaging of mRNA encoding secretome proteins and translated nascent peptide markers show that secretome translation occurs at endoplasmic reticulum junctions near lysosomes, requires lun...
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Luke Lavis @rhodamine110.bsky.social · 04/11/2025
Check out this cool method to quantify EV diffusion in vivo using the JF dyes! Awesome work by Ema Cocucci and coworkers. urldefense.com/v3/__https:/...
urldefense.com
Exploring the Spatial Limits of Extracellular Vesicles‐Mediated Intercellular Communication
Extracellular vesicles (EVs) are biological nanovectors that retain molecular signatures of their cells of origin and mediate intercellular communication, resulting in ideal platforms for the develop....
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Luke Lavis @rhodamine110.bsky.social · 30/10/2025
Outlook is autocorrecting "on:off ratio" to "on😯ff ratio" and I love it so much.
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Sam Connell @samuelconnell.3i.social · 28/10/2025
Very cool collaborative work between multiple groups across three institutions. Shoutout to @rhodamine110.bsky.social and his crew along with longtime @the.3i.social community @so-lets-kilab70.bsky.social for deploying 3i's #latticelightsheet for some particularly elegant chromatin microscopy. 🔥🔬🧠🧬🥽
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Luke Lavis @rhodamine110.bsky.social · 28/10/2025
Just upgraded to a Claude Enterprise account (thanks HHMI) and was playing with the Molecule studio artifact. Here is rhodamine 110, my BlueSky username. Looks like our jobs are safe for now!
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Luke Lavis @rhodamine110.bsky.social · 27/10/2025
A new, nerdy paper. We figured out (some) of the rules underlying cell-permeability of probes and designed ligands that light up, grab, and move proteins around. Awesome @hhmijanelia.bsky.social x @uwmadison.bsky.social x @stjuderesearch.bsky.social collaboration! www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Janelia Research Campus @hhmijanelia.bsky.social · 19/09/2025
📢 Applications are open for the 4th installment of our ChemTools conference. We'll explore: 🧪 Platforms & tools for analyzing cell/tissue networks ⚡ Methods to perturb biological networks 🔍 Applications that yield new insights 🛏️ Lodging + meals covered ➡️ Apply by Dec 5: janelia.news/CHM26
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Luke Lavis @rhodamine110.bsky.social · 19/08/2025
PSA: If you are a #ChemDraw user on the Mac, they changed the font for the ACS Document 1996 style in the recent past; Helvetica to Arial. Watch out for vestigial Helvetica characters in figures, which some journal submission platforms *really* don't like.
media.tenor.com
a rainbow and a star with the words " make you know " on it
ALT: a rainbow and a star with the words " make you know " on it
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Tsai-Wen Chen @tsaiwenchen.bsky.social · 23/05/2025
My debut on BlueSky! Here’s how we harvest the firing of neurons to see them better in the living brain! 👇 www.nature.com/articles/s41... Grateful for the amazing dyes from @rhodamine110.bsky.social and insightful suggestions from @adamezracohen.bsky.social !
nature.com
Imaging neuronal voltage beyond the scattering limit - Nature Methods
ALI is an approach for analyzing voltage imaging data that is inspired by algorithms used in super-resolution microscopy. It allows resolving the activity of single neurons in densely labeled populati...
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FASEB @faseborg.bsky.social · 18/04/2025
The sophomore outing for this revelatory conference is here! Join us for #OPTSRC for the latest in optical probes, which are crucial for biological imaging techniques. You'll meet organizers like @rhodamine110.bsky.social and more. View the agenda and save your space: buff.ly/LIRRF15
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Luke Lavis @rhodamine110.bsky.social · 11/04/2025
We're looking for 1-2 enthusiastic early career chemists to join our Open Chemistry team at @hhmijanelia.bsky.social. Come help us create amazing dyes and share them with the world. Please share with the best recent/soon-to-be B.S. chemists you know! bit.ly/42w8C6N
bit.ly
Research Technician - Open Chemistry
Primary Work Address: 19700 Helix Drive, Ashburn, VA, 20147 Current HHMI Employees, click here to apply via your Workday account. Summary: Open Chemistry is a collaborative research group whose missio...
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Sam Connell @samuelconnell.3i.social · 03/04/2025
Thanks Luke! Grateful for your good work kind sir. Thirty years ago, I remember crowding around the lightbox in awe with my Pharmingen R&D colleagues at the glowing BioColors vectors we had grown up after licensing from Roger Tsien's Lab down the street at UCSD where I was about to graduate. 🔬🧪🥽🔥🌈
media.tenor.com
a picture of luke skywalker with the words luke !!! above him
ALT: a picture of luke skywalker with the words luke !!! above him
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Luke Lavis @rhodamine110.bsky.social · 03/04/2025
I’ve been a dye chemist for a quarter century! 25 years ago today I walked into this funky little company in Eugene, OR called Molecular Probes. My first task was making Alexa Fluor 633 and I never looked back. I am grateful for all my teachers and mentors along the way.
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Luke Lavis @rhodamine110.bsky.social · 01/04/2025
Honored to help enable two back-to-back papers in @natureneuro.bsky.social; first DELTA www.nature.com/articles/s41... with collaborators at @hhmijanelia.bsky.social and then EPSILON www.nature.com/articles/s41... with @adamezracohen.bsky.social; @dyerfulchymist.bsky.social is always in the mix!
nature.com
DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning - Nature Neuroscience
Researchers developed DELTA, a method for brain-wide measurement of synaptic protein turnover with single-synapse resolution, providing a powerful tool to localize and study mechanisms underlying syna...
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Janelia Research Campus @hhmijanelia.bsky.social · 31/03/2025
🥼 Janelia researchers led by @boazmohar.bsky.social @nspruston.bsky.social @rhodamine110.bsky.social & @svoboda314.bsky.social @alleninstitute.bsky.social have developed a new imaging tool that maps brain-wide changes in neuronal connections. 🧠 🔗 www.janelia.org/news/new-ima...
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Luke Lavis @rhodamine110.bsky.social · 30/03/2025
A little nugget of whimsy: Apple Music has these “lyrics” for the Star Wars main theme (from ESB).
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Luke Lavis @rhodamine110.bsky.social · 28/03/2025
You know you're getting old when your Organic Chemistry Lab TA training partner from the first week of grad school is now an editor at @acs.org (does this mean I have to click 'Accept' @pomerantz.bsky.social?)
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Luke Lavis @rhodamine110.bsky.social · 28/03/2025
How it started: About eight years ago Bob Tjian ("Tij") and I sat in the back of cab in San Francisco and discussed the crazy idea of using live-cell single-molecule tracking for high-throughput drug screening. How it's going:
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Luke Lavis @rhodamine110.bsky.social · 01/03/2025
Hey #chemsky and beyond, with all that is going on, I am curious what expensive, high margin molecules we could provide to the community for free. What things do you use all the time, cost way too much, and would make a difference? Alexa Fluor 488 NHS? Other dyes? Other molecule?
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Luke Lavis @rhodamine110.bsky.social · 13/02/2025
Had a blast writing this piece celebrating the latest paper in @pubs.acs.org from @ellensletten.bsky.social and Ellen’s general awesomeness. My 11-year old daughter was my coauthor! (try to find all the Easter Eggs) pubs.acs.org/doi/10.1021/...
pubs.acs.org
Stars by the Pocketful
SWIR dyes─The Eras Tour. This love story between chemistry and biology shines.
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Luke Lavis @rhodamine110.bsky.social · 30/12/2024
I love that sodium borate resulted in the protection of some of the most beautiful coastline on the planet. en.wikipedia.org/wiki/Samuel_...
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Luke Lavis @rhodamine110.bsky.social · 30/12/2024
Discipline-appropriate cocktail.
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Luke Lavis @rhodamine110.bsky.social · 27/12/2024
Home.
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Luke Lavis @rhodamine110.bsky.social · 18/12/2024
That moment when you show up at a conference and some Max Planck Director stole your outfit. #twinning #sciencefashion #whoworeitbest
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Luke Lavis @rhodamine110.bsky.social · 13/12/2024
Epic food day in Singapore. Roti prata for breakfast, umm didn't need lunch, frog porridge for dinner, and the king of fruits for dessert. On to my next stop tomorrow but thankful for the visit and hospitality in this lovely country.
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Luke Lavis @rhodamine110.bsky.social · 11/12/2024
Excited for the second day of our symposium at the Singapore International Chemistry Conference. Such a beautiful city.
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Brian English @sciencethecat.bsky.social · 03/12/2024
hand-made silver #Janelia ChemisTree erlenmeyer flask ornaments @rhodamine110.bsky.social @hhmijanelia.bsky.social #TollensTest #chemsky
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Luke Lavis @rhodamine110.bsky.social · 02/12/2024
PSA: Just updated Adobe Illustrator to 29.1 and noticed a quirk—deleting text and then retyping causes a switch to Myriad Pro. To fix it, head to Preferences > Type and disable "Missing Glyph Protection". Hope this saves fellow figure smiths some time and frustration!
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Luke Lavis @rhodamine110.bsky.social · 28/11/2024
My first post-twitter post highlights a fantastic paper by Tim Mitchison and Pamela Silver. Tim has always been an inspiration to me, and it's rewarding to see him working with the JF dyes, molecules we developed, and collaborating with Eikon, a company we co-founded. www.biorxiv.org/content/10.1...
biorxiv.org
Comparative evaluation of cell-based assay technologies for scoring drug-induced condensation of SARS-CoV-2 nucleocapsid protein
Protein-nucleic acid phase separation has been implicated in many diseases such as viral infections, neurodegeneration, and cancer. There is great interest in identifying condensate modulators (CMODs)...
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