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Nitish Dua

@nitishdua.bsky.social
517 followers 554 following 15 posts

Post-Doc in Grotjahn lab (grotjahnlab.org) @scrippsresearch. Previously, PhD in Badrinarayanan lab (microgenomes.com) @NCBS_bangalore . 🏳️‍🌈 #mitochondria #cryoET

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Reposted by Nitish Dua
Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Hauke Hillen @haukehillen.bsky.social · 11/09/2026
Happy to share our new preprint on the structure of the human mitochondrial RNA degradosome, a central player in organellar RNA metabolism! Work led by graduate student @paulafprado.bsky.social in our group. www.biorxiv.org/content/10.6... 🧵 1/9
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Acid Rain @bearysweet.bsky.social · 08/09/2026
A Japanese emperor caterpillar (Sasakia charonda), also called a dragonhead due to its distinctive horned projections. The horns and markings act as a disguise to scare off hungry predators. It'll eventually transform into the Japanese Emperor Butterfly, ie. the national butterfly of Japan.
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Robert Arkowitz @robertarkowitz.bsky.social · 03/09/2026
www.molbiolcell.org/doi/abs/10.1...
molbiolcell.org
Organelle partitioning in the multi-budding yeast Aureobasidium pullulans | Molecular Biology of the Cell
Cellular organelle content is fairly constant within a given cell type. This is accomplished in part by ensuring equitable organelle partitioning during division. Much of our understanding of organell...
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Robert Arkowitz @robertarkowitz.bsky.social · 01/09/2026
🔬🧪🦠 An exciting opportunity to work at the interface of Fungal Cell Biology & Biophysics in Nice, FR in a collaborative project on roles of cytoplasmic crowding in fungal pathogen morphogenesis, antifungal responses and host interaction. ibv.unice.fr/news/postdoc... Please share/retweet
Postdoc or Research associate/engineer position
in Fungal Cell Biology/Biophysics
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 31/08/2026
Sad news. Yonath was/is a legend indeed. Now there are only 4 living female @nobelprize.org laureates in chemistry. There are 20 living Nobel Prize winners just at Stanford right now.
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Eloise Powers @elnopower.bsky.social · 10/07/2026
Admired for its regal blue lace-like crest and mesmerizing red eyes. The Victoria Crowned Pigeon, native to New Guinea, is the world's largest living pigeon. Its graceful beauty and deep calls make it one of the region's most remarkable birds. Scientific Name Goura victoria 📷 B. Sharma
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Dr. Arun Sethuraman @arunsethuraman.bsky.social · 11/07/2026
Hey team - it’s looking very likely that I’ll be hiring not one but two four year postdocs! We’re a fun lab with tons of theoretical and applied pop gen projects - broadly in polyploid, conservation, and human evo. Competitive salary, sunny San Diego! Do share with your about to defend grads!
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Ben Barad @baradlab.com · 08/07/2026
My personal summer of code continues with another ChimeraX plugin - this time, MorphometricsX! Load quantified meshes from morphometrics (or pycurv) in ChimeraX with color-by-quantification and display alongside tomos and particles. Coming to the toolshed soon! #teamtomo github.com/baradlab/mor...
Screenshot of MorphometricsX rendering mitochondrial membrane surfaces in chimera with color-by-quantification.
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Chi-Min Ho @cmholab.bsky.social · 30/06/2026
Incredibly proud of Messi Haile @mehsehret.bsky.social, a founding member of the Ho Lab, for her beautiful work uncovering the inner workings of a central piece of the malaria parasite invasion machinery: the malarial moving junction, out today in @cellpress.bsky.social! tinyurl.com/4p3md2eb 🦠❄️🔬
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Nitish Dua @nitishdua.bsky.social · 27/06/2026
Really hyped to share our pre-print on mtDNA replication-fission ! @nanigrotjahn.bsky.social (doi: doi.org/10.64898/202...) 🧵with details below ⤵️
doi.org
ATAD3A structurally links mtDNA replication and mitochondrial fission
Mitochondrial function depends on the maintenance of its genome, and disruptions in copy number and distribution are hallmarks of mitochondrial disorders. Mitochondrial DNA (mtDNA) replication is spat...
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Goldenhourminerals @ghminerals.bsky.social · 24/06/2026
Quartz, Amethyst, Hematite slice from India Sold www.goldenhourminerals.com
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Vanni Lab at UNIFR, Switzerland @labvanni.bsky.social · 12/06/2026
This amazing work by @danialv.bsky.social and Bodan Hu is now out in peer-reviewed form at @cp-cell.bsky.social with a lot of new simulations! Check it out if interested in lipid transport!
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Emily Jane Rothwell 🖤🌸🖋️ @emjanerothwell.bsky.social · 24/05/2026
the world needs more guinea pig cartographers
A guinea pig cartographer works amongst his maps, using his instruments, with a quill and ink next to him on a wooden table; he looks at the viewer obliquely with a black background in a style that is reminiscent of early modern portraiture. The artist enjoys exploring the histories of art through homages to previous paintings in his whimsical works.
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bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 22/05/2026
Easymode: general pretrained networks for cellular cryo-ET enable flexible approaches to subtomogram averaging www.biorxiv.org/content/10.64898/20…
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Rockefeller University Press @rupress.org · 07/05/2026
In @jcb.org, Covill-Cooke, Hirashima, Kawano, Endo, Kornmann (@ox.ac.uk) and colleagues find that the ERMES #lipid-transporting complex, long-thought to be an obligate heterotetramer, can be replaced by only one component: mitochondrially tethered Mmm1. rupress.org/jcb/article/... #Mitochondria
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Dimitry Tegunov @dtegunov.bsky.social · 03/05/2026
We're super excited to share MissAlignment: a new ML-based approach to reference-free tilt series alignment, spearheaded by @martenchaillet.bsky.social. We think it's going to make your cryo-ET life a lot better. Preprint: www.biorxiv.org/content/10.6... Code: github.com/warpem/miss-... 🧶 Thread:
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Juan C. Landoni @jclandoni.bsky.social · 21/04/2026
The Landoni Lab opens this summer at UNIL! @fbm-unil.bsky.social 🔬 Quantitative #imaging + systems biology to decipher how #metabolic architecture & #mtDNA dynamically shape tissue development, #aging and #mitodisease. Beyond excited to fire up the lasers, open positions soon! 🧪 #mitochondria #newPI
Landoni lab & UNIL logos, featuring fluorescent images of mitochondria and nematodes
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Kin Pan Chung @kinpanchung.bsky.social · 03/03/2026
Mitochondria can indeed be inherited from the father! 🍀 In this new study, we uncovered the molecular mechanisms underlying mitochondrial inheritance in Nicotiana tabacum. @natplants.nature.com doi.org/10.1038/s414...
doi.org
High-frequency biparental inheritance of plant mitochondria upon chilling stress and loss of a genome-degrading nuclease - Nature Plants
Maternal inheritance of mitochondria breaks down in the cold when a mitochondrial DNA degrading nuclease is defective, resulting in biparental inheritance that can rescue mitochondrial mutations and g...
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Hanjin Liu @liu-hanjin.bsky.social · 22/02/2026
Since last year, I've been making a RELION GUI that supports viewing, navigating and running jobs in a way completely compatible with the original RELION pipeline. Now it's working nicely for both SPA and tomography! Please try it out - github.com/hanjinliu/hi...
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Michaela Medina @mmedina300kv.bsky.social · 20/01/2026
Super exciting to see this preprint come out! It’s been a wonderful opportunity to be a part of this story and to apply Surface Morphometrics tooling to a fascinating system. Congratulations to all authors @wilflinglab.bsky.social #teamtomo
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Alice Auersperg @auersperga.bsky.social · 19/01/2026
Our new paper (with @biotay.bsky.social) is out and on the cover story of @currentbiology.bsky.social !!!! Veronika, a Carinthian mountain cow flexibly uses a “multi-purpose tool” to scratch herself. A video and more information will follow in the comments. www.cell.com/current-biol...
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Ben Barad @baradlab.com · 08/01/2026
Happy new year #teamtomo! We've resumed our OHSU tomo journal club, and this year I am going to be sharing it on bluesky. This week we did a roundtable, where attendees each brought a paper and did a 3-5 minute discussion of what they thought was cool about it. Here are the papers they discussed!
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Journal of Cell Biology @jcb.org · 05/01/2026
Medina, Chang et al. of the @nanigrotjahn.bsky.social lab introduce a new method based on the Surface Morphometrics pipeline to measure global and local thicknesses of organellar #membranes from cellular cryo-electron tomography data. rupress.org/jcb/article/... #CryoET
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Yamuna Krishnan @krishnanyamuna.bsky.social · 17/12/2025
Organelles do NOT have a single uniform pH. And if you think they must, because “protons diffuse fast,” this paper is for you. A thread on why that assumption is wrong; and what we found instead. 🧵 1/n
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Aditya Kamat @adityakamat.bsky.social · 10/12/2025
1/Now published! We identify a novel regulatory layer underlying SOS response dynamic. Find a short summary about our findings below. journals.plos.org/plosbiology/... #MicroSky
journals.plos.org
Variability in intrinsic promoter strength underlies the temporal hierarchy of the Caulobacter SOS response induction
The bacterial SOS response unfolds in a defined temporal order, but the determinants of this hierarchy are unclear. This study shows that intrinsic promoter strength, modulated in part by sigma factor...
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Julius Winter @julius-w.bsky.social · 11/12/2025
🔬🥟 What do empanadas and #mitochondria have in common? More than you'd think. Our "empanada-shaped" cells just helped uncover hidden subpopulations of mitochondria in your everyday, unpolarized cell lines. Curious how mitochondrial trafficking shapes network health?
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Nitish Dua @nitishdua.bsky.social · 12/12/2025
Extremely grateful to have had the opportunity to present my CryoET adventures in the grotjahn lab at #cellbio2025. We can all agree that the CryoEM and CryoET session was the best. It was wonderful to meet old mito besties, NCBS besties and make new besties. 😌
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Stirling Churchman @stirlingchurchman.bsky.social · 03/12/2025
Oxidative phosphorylation complexes contain subunits encoded by both the nuclear and mitochondrial genomes. How do cells coordinate the synthesis and assembly of these complexes at the inner membrane? We teamed up with Martin Ott (@mitolab.bsky.social) to address this in two recent papers.
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hamid13r.bsky.social @hamid13r.bsky.social · 25/11/2025
Just installed Doppio on our Linux machine. This is awesome work making relion more accessible and easy to run. I haven't tried submitting jobs yet but it is already making our live easier! I met Matt Iadanza at the CZI but I guess he doesn't have bluesky to tag!
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Waggoner Lab @labwaggoner.bsky.social · 20/11/2025
An inherited mitochondrial DNA mutation remodels inflammatory cytokine responses in macrophages and in vivo in mice @natcomms.nature.com @ryanlab.bsky.social @tcddublin.bsky.social @universitypress.cambridge.org www.nature.com/articles/s41...
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Jan-Hannes Schaefer @jhschaef.bsky.social · 07/11/2025
CryoSift is now out @actacrystf.iucr.org doi.org/10.1107/S205... Thanks to all involved. Happy processing!
doi.org
CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection
CryoSift is a CNN-based tool that assesses the quality of 2D class averages. The incorporation of CryoSift into cryoSPARC workflows enables automated particle-stack cleaning.
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Nitish Dua @nitishdua.bsky.social · 28/10/2025
Exciting !
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Blake Hernandez @loxstoplox.bsky.social · 23/05/2025
I’m excited to announce that my paper describing non-canonical mitotic mechanisms in the early mouse embryo is out in @science.org ! (link at end of 🧵)
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Falk Schneider @faldalf.bsky.social · 22/10/2025
mStayRose is published in JBC 🥳🎉 Congratulations @wsctt.bsky.social @sporemohan.bsky.social and team for the monumental effort to make a non-natural amino acid incorporating fluorescent protein accessible. It's based on mStayGold, bright, and photostable: www.jbc.org/article/S002...
jbc.org
StayRose: a photostable StayGold derivative red-shifted by genetic code expansion
Photobleaching of fluorescent proteins often limits the acquisition of high-quality images in microscopy. StayGold, a novel dimeric green fluorescent protein recently monomerised through sequence engi...
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RyanLab_TCD @ryanlab.bsky.social · 20/10/2025
Last weeks #immunometabolism discoveries @biomednews.bsky.social ⬇️⬇️⬇️ biomed.news/bims-imicid/... Lots of excellent work inside incl. Backtracking metabolic dynamics in single cells predicts bacterial replication in human macrophages.
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Basil Greber @bjgreber.bsky.social · 16/10/2025
Now out in Science! Cyclin-dependent kinases (CDKs) are key regulators of the cell cycle. In @vcushing.bsky.social's magnum opus, we use #cryoEM to figure out how the CDK-activating kinase recognises CDKs to fully activate them - a key step in cell cycle control. www.science.org/doi/10.1126/...
science.org
Structural basis of T-loop–independent recognition and activation of CDKs by the CDK-activating kinase
Cyclin-dependent kinases (CDKs) are prototypical regulators of the cell cycle. The CDK-activating kinase (CAK) acts as a master regulator of CDK activity by catalyzing the activating phosphorylation o...
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Christian Frezza @frezzalab.bsky.social · 29/08/2025
Mitochondrial transfer www.nature.com/articles/s42...
nature.com
Mitochondrial transfer - Nature Metabolism
Intercellular mitochondrial transfer has recently attracted substantial attention, both from a fundamental and therapeutic point of view. At the same time, the topic continues to be met with scepticis...
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Current Biology @currentbiology.bsky.social · 28/08/2025
Feeling mitochondrially challenged lately? Here are two classic reviews on #mitochondria that should help. www.cell.com/current-biol... www.cell.com/current-biol...
cell.com
The Origin and Diversification of Mitochondria
Moving beyond the simplistic view of mitochondria as the power house of the cell, Roger et al. present the immense diversity of mitochondria and mitochondrial functions across eukaryotes, and bring th...
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Nitish Dua @nitishdua.bsky.social · 24/08/2025
📣📣📣📣
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Journal of Cell Science @jcellsci.bsky.social · 12/05/2025
Kailash Venkatraman, Nicolas-Frédéric Lipp & @ibudin.bsky.social examine the similarities between prokaryotic intracytoplasmic membranes & mitochondrial IMs, & discuss whether cristae evolution has driven specialisation of the #mito lipidome. journals.biologists.com/jcs/article/... #JCSMitoSI
Bacterial ICMs exhibit internal invaginations that resemble eukaryotic cristae. (A)TEM images showing tubular cristae-like ICM compartments in free-living Desulfobacterota, and similar cristae-like ICM tubules in Desulfovibrio carbinolicus strains. The eukaryotic model organism S. cerevisiae exhibits tubular cristae structures, whereas the commonly used HEK293 cell line exhibits predominantly lamellar cristae structures. Scale bars: 500 nm.  (B) Eukaryotic mitochondria tend to exhibit lamellar, tubular or discoidal cristae morphology, whereas orders of the class alphaproteobacteria exhibit a range of ICM morphologies. Lamellar-like ICMs, which exhibit parallel cytoplasmic protrusions that do not contact the inner membrane, are commonly observed in nitrogen-fixing and several methanotrophic alphaproteobacteria.  (C)  This simplified and non-exhaustive cladogram indicates the two domains of life – bacteria and archaea – with proto-mitochondria emerging in early alphaproteobacteria. Eukaryogenesis is marked by the horizontal transfer (red dotted arrow) from Bacteria to Hordarchaeales in Asgard archaea. §, †, #, * and ‡ connect species listed in B to their respective clades in C.
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Rita Strack @ritastrack.bsky.social · 01/05/2025
I had some absolutely incredible papers come online this week, and I need to take a minute to post about each of them. First, let me tell you about the CarboTag probes for imaging plant cell walls! From the Sprakel lab (a short thread) www.nature.com/articles/s41...
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Michaela Medina @mmedina300kv.bsky.social · 01/05/2025
So excited for this work to be out!! Thanks to @attychang.bsky.social, @hamid13r.bsky.social, blue sky less Daniel Fuentes, @nanigrotjahn.bsky.social and @tomo.science!!!
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Danielle Grotjahn @nanigrotjahn.bsky.social · 01/05/2025
🚨New preprint!🚨 #teamtomo We expanded Surface Morphometrics to quantify membrane thickness from cryo-ET—revealing local variation across organelles. Led by the lab’s first grad student, @mmedina300kv.bsky.social (defending Monday! 🍾) w/ @attychang.bsky.social @hamid13r.bsky.social & @tomo.science
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Patrick Duffy @pduffyplankton.bsky.social · 25/04/2025
#invertefest needs some more marine representation, so here are 2 Liriope sp. hydrozoan and a teeny ctenophore amongst numerous copepods. Data recorded (5 fps) via a benchtop shadowgraph camera from a non-filtering end plankton net tow.
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Sergio Cruz-León @sergiocruzleon.bsky.social · 11/04/2025
Excited to share our preprint on the molecular architecture of heterochromatin in human cells 🧬🔬w/ @jpkreysing.bsky.social, @johannesbetz.bsky.social, @marinalusic.bsky.social, Turoňová lab, @hummerlab.bsky.social @becklab.bsky.social @mpibp.bsky.social 🔗 Preprint here tinyurl.com/3a74uanv
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Danielle Grotjahn @nanigrotjahn.bsky.social · 09/04/2025
I know print journals aren't exactly on everyone's radar these days, but we’re still geeking out that our latest study—led by the brilliant @attychang.bsky.social—landed the cover of the April issue of JCB! 🤩 @zidlab.bsky.social @tomo.science @hamid13r.bsky.social
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David Pla Martin @dplamartin.bsky.social · 04/04/2025
Excited to share our latest paper in Science Advances! We finally dissected a new pathway for mitochondrial quality control upon mtDNA replication stress! Let’s start a short thread! 🧵 www.science.org/doi/10.1126/...
science.org
Retromer promotes the lysosomal turnover of mtDNA
Lysosomal uptake of mtDNA controls mitochondrial quality.
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Maya Voichek @mayavoichek.bsky.social · 17/03/2025
1/ Transposable elements are often called "jumping genes" because they mobilize within genomes. 🧬 But did you know they can also jump 𝘣𝘦𝘵𝘸𝘦𝘦𝘯 cells? 🤯 Our new study reveals how retrotransposons invade the germline directly from somatic cells. www.biorxiv.org/content/10.1... A short thread 🧵👇
Drosophila follicle showing retrotransposons (pink & yellow) expressed in somatic cells infecting the oocyte
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