Sign in

Itay Budin

@ibudin.bsky.social
1K followers 426 following 113 posts

Head of the Budin lab at UCSD (www.budinlab.com). Musings on thin layers of grease in our cells (and other topics). Lipids, cell membranes, biophysics, chem bio, evolution. 🏳️‍🌈

PostsRepliesMedia
Reposted by Itay Budin
Nature Cell Biology @natcellbio.nature.com · 21/09/2026
☕Two studies show that the ER-associated protein CLN8 catalyses the acyl CoA-dependent acylation of glycerophosphoglycerol, producing lysophosphatidylglycerol, which is then converted into BMP. These results provide insight into CLN8 Batten disease. www.nature.com/articles/s41...
nature.com
Batten disease protein CLN8 enables a non-canonical phospholipid synthesis pathway - Nature Cell Biology
Two studies show that the ER-associated protein CLN8 catalyses the acyl CoA-dependent acylation of glycerophosphoglycerol, producing lysophosphatidylglycerol, which is then converted into BMP. These r...
162
Reposted by Itay Budin
Quanta Magazine @quantamagazine.org · 18/09/2026
Comb jellies are ancient marine predators whose hairlike extensions known as cilia refract light as they swim, giving them an iridescent shimmer. They are the largest animals known to use cilia for movement. www.quantamagazine.org/ctenophores-...
04610
Reposted by Itay Budin
Markus Deserno @markusdeserno.bsky.social · 14/09/2026
Reminder! THIS IS TOMORROW, September 15, 11am EST. Please join us! Details for how are in the ALT text of the original post's image! Also, due to some logistic-snafu a wrong Zoom link was sent, but you all received the correct one later by email, and will again receive it prior to the webinar!
045
Reposted by Itay Budin
@KayTrue (Sarah L. Keller) @kaytrue.bsky.social · 23/08/2026
Free seminar (just register) from the @biophysicalsoc.bsky.social on chemical & biophysical principles of how membranes interact with molecules around them, featuring Janice Robertson, Luca Monticelli, and @dimovalab.bsky.social. 8am for us West Coast researchers
065
Reposted by Itay Budin
Alex Guseman @alexguseman.bsky.social · 21/08/2026
Come be my colleague! We are hiring a structural biologist. I have thoroughly enjoyed starting my career here and both department(s) are full of exceptional scientists. apol-recruit.ucsd.edu/JPF04589
apol-recruit.ucsd.edu
Assistant Professor in Structural Biochemistry
University of California, San Diego is hiring. Apply now!
35662
Itay Budin @ibudin.bsky.social · 01/05/2026
What membrane properties do cells maintain through regulation of lipid metabolism? In a new paper, we identify intrinsic curvature stress as one such parameter and show how different (eukaryotic) cell types employ different lipids to do that www.cell.com/cell-reports...
cell.com
Active regulation of intrinsic curvature by eukaryotic phospholipid metabolism
Cells maintain membrane function by actively balancing the molecular shape of their lipids. Milshteyn et al. find that, when subjected to high hydrostatic pressure, yeast and human cells, but not bact...
18430
Itay Budin @ibudin.bsky.social · 13/04/2026
New paper where we report that Npc2 - a shuttle-like lipid transfer protein - in yeast directly transports sphingolipids to the = vacuole membrane during formation of microautophagy-linked ordered domains #lipidtime www.sciencedirect.com/science/arti...
sciencedirect.com
Transport of sphingolipids by yeast Npc2 supports phase separation of the vacuole membrane
The yeast vacuole membrane forms ordered microdomains that facilitate microlipophagy under nutrient limitation. We previously found that this process …
0289
Itay Budin @ibudin.bsky.social · 06/02/2026
News and views from Olivia Seidel in my lab on this important paper from the Baskin lab from last month www.nature.com/articles/s41...
nature.com
How to catch a lipid transporter - Nature Chemical Biology
Understanding how lipids and proteins interact in living cells is a long-standing challenge. Coupling localized lipid production with proximity proteomics, Tei et al. identified transporters that act ...
0112
Itay Budin @ibudin.bsky.social · 01/02/2026
This is a fantastic institue and people…what an opportunity!
010
Itay Budin @ibudin.bsky.social · 16/01/2026
I want to highlight a new #lipidtime article from our lab on disease-associated 1-deoxysphingolipids, which is nicely featured on the cover of this month's issue of Cell Chem Bio @cp-cellchembiol.bsky.social www.cell.com/cell-chemica...
2283
Reposted by Itay Budin
Jeremy Baskin @jeremybaskin.bsky.social · 07/01/2026
Thrilled to share our latest study, led by @reikatei.bsky.social, in @natchembio.nature.com! We began by asking a simple question—how do cells know if they have too much of a lipid in a particular membrane, and how do they respond to rectify this imbalance? www.nature.com/articles/s41... More info 👇
nature.com
Membrane editing with proximity labeling reveals regulators of lipid homeostasis - Nature Chemical Biology
Coupling an optogenetic lipid-modifying enzyme with proximity labeling reveals protein networks and mechanisms regulating lipid homeostasis in the membranes of target organelles.
716261
Reposted by Itay Budin
Jeremy Baskin @jeremybaskin.bsky.social · 05/01/2026
Happy new year! I've so enjoyed the end-of-year lists of people's favorite papers from 2025, so I made a list of 16 #lipidtime studies from 2025 that I found interesting. Here they are in no particular order (please add more if you would like!), and here's to much more exciting science in 2026! 🧪
56625
Reposted by Itay Budin
Coskun Lipid Cellar @ ZML Dresden @lipid.bsky.social · 15/12/2025
Ups we did it again! Please mark your calender. EMBO Workshop “Lipid Code to Life”, taking place September 7–11, 2026, in Dresden, organized by Maria Fedorova, @lipid.bsky.social, Valerie O'Donnell, @holthuislab.bsky.social and @molcellbiophys-lab.bsky.social 🥳 Retweets = lipidlove
copyright Palina Nepachalovich of ZML Dresden
14638
Reposted by Itay Budin
UC San Diego School of Physical Sciences @ucsdphysci.bsky.social · 17/10/2025
Researchers in Itay Budin's lab, incl. William Moore, have created a tool with the power to see lipid movement inside cells in unprecedented detail. The tool uses fluorogens to illuminate certain lipids while other remain dark. Their work appears in Nature Chemical Biology. bit.ly/4hnDFZG
bit.ly
The Many FACES of Lipid Research
Scientists have long wanted to get a closer look at the movement of lipids around a cell, but it’s tough to visualize with traditional light microscopy. UC San Diego researchers have unveiled a new technology with the power to see cells in unprecedented detail.
0103
Itay Budin @ibudin.bsky.social · 16/10/2025
Sharing a new in-depth review article on intrinsic lipid curvature and models of lipidome adaptation to the environment that I recently wrote with Jacob Winnikoff for Progress in Lipid Research (open access). www.sciencedirect.com/science/arti...
2295
Reposted by Itay Budin
Siewert-Jan Marrink @cg-martini.bsky.social · 02/10/2025
How does Mycoplasma pneumoniae scavenge lipids from its host membranes? | Science Advances www.science.org/doi/full/10....
science.org
How does Mycoplasma pneumoniae scavenge lipids from its host membranes?
P116 is an adaptive, all-in-one lipid acquisition machinery fit for any host environment.
093
Reposted by Itay Budin
Markus Deserno @markusdeserno.bsky.social · 26/09/2025
I am super excited to announce that we have a tenure-track faculty position in biophysics open in the Department of Physics at Carnegie Mellon! 🧪 Interfolio link: apply.interfolio.com/174360 PLEASE, share widely across the blue skies! Let me briefly explain what we're looking for: 1/10
Tenure-track Position in Biophysics at Carnegie Mellon University, Department of Physics

Location: Pittsburgh, PA
Open Date: Sep 19, 2025

Description
The Department of Physics at Carnegie Mellon University invites applications for a tenure-track faculty position in biophysics. The appointment is intended to be at the Assistant Professor level, but exceptional candidates at a higher level may also be considered. We seek outstanding candidates with a strong record in cellular and subcellular biophysics. Topics of particular interest include, but are not limited to, uncovering how key characteristics of living systems arise from the interplay between supramolecular cellular structures, how the emergent cellular circuitry defines goals and enables robust decision making, and how metabolic resources are allocated. This encompasses understanding of how information is learned, stored, transduced, and processed across subcellular structures. Applicants with theoretical, data science, or experimental backgrounds within biological physics are encouraged to apply. The ideal candidate will strengthen and extend research programs of current biophysics faculty in the Department of Physics and collaborate with broader life science activities across many departments at CMU and the wider Pittsburgh area.

More details on Interfolio: https://apply.interfolio.com/174360
210589
Reposted by Itay Budin
Gene Chong @chongg.bsky.social · 26/09/2025
Are the lipids associated with static protein structures there as long-lived ligands or an effect of preferential solvation? This computational-experimental framework shows the way! #lipidtime #compchem www.nature.com/articles/s41...
nature.com
Molecular basis for the regulation of membrane proteins through preferential lipid solvation - Nature Chemical Biology
Static protein structures can capture the association of lipids, but it is unclear whether the association is due to lipids acting as long-lived ligands or the solvation of preferred lipids around the protein. A computational-experimental framework has now shown that for the protein CLC-ec1, it is the change in lipid solvation energies that drives dimerization, with preferred lipids around the protein modulating this driving force.
03819
Itay Budin @ibudin.bsky.social · 26/09/2025
Congrats Erdinc! So well deserved
010
Reposted by Itay Budin
Sarah Cohen @cohenlaboratory.bsky.social · 17/09/2025
Wonderful to see our paper on the #organelle signatures of #neurons and #astrocytes out in final form - congratulations, Shannon Rhoads and team!🎉 t.co/BPxKlbU6Ou
610040
Itay Budin @ibudin.bsky.social · 15/09/2025
Very excited to share new work out today in @natchembio.nature.com on a new approach - FACES - for selectively imaging of phospholipids and other biomolecules at spatial resolutions down to individual membrane leaflets (1/n) www.nature.com/articles/s41...
nature.com
Leaflet-specific phospholipid imaging using genetically encoded proximity sensors - Nature Chemical Biology
An approach combining bioorthogonal chemistry with genetically encoded fluorogen-activating proteins enables subcellular imaging of phospholipids and glycans, as well as the visualization of lipid tra...
716369
Reposted by Itay Budin
Hannah Baughman @hannahbaughman.bsky.social · 11/09/2025
UW Tacoma is hiring a tenure track Assistant Professor of Biochemistry and a teaching Assistant Professor of Organic Chemistry. Please share widely and consider applying. Biochemistry: apply.interfolio.com/172884 Organic Chemistry: apply.interfolio.com/172940
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
022
Reposted by Itay Budin
Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 28/08/2025
I am delighted to announce that the UW Department of Biochemistry has opened searches for TWO tenure-track positions. Descriptions and links in the following two posts.
2158122
Itay Budin @ibudin.bsky.social · 21/08/2025
Tour de force on the kinetics and mechansms of lipid transport in cells through exquisite use of bifunctional probes by @nadlerlab.bsky.social and colleagues. Such an exciting time for the field. www.nature.com/articles/s41...
nature.com
Quantitative imaging of lipid transport in mammalian cells - Nature
Directional, non-vesicular lipid transport is responsible for fast, species-selective lipid sorting into organelle membranes.
1306
Itay Budin @ibudin.bsky.social · 15/08/2025
The 4 chemically targeted Laurdan derivatives (for mitochondria, ER, lyso/endosomes, and the Golgi) that we published last year are now available (at a pretty reasonable price) from Avanti Polar Lipids (cat #880194, 880197, 880193, 880196). These have been very popular! pubs.acs.org/doi/full/10....
pubs.acs.org
Organelle-Targeted Laurdans Measure Heterogeneity in Subcellular Membranes and Their Responses to Saturated Lipid Stress
Organelles feature characteristic lipid compositions that lead to differences in membrane properties. In cells, membrane ordering and fluidity are commonly measured using the solvatochromic dye Laurdan, whose fluorescence is sensitive to lipid packing. As a general lipophilic dye, Laurdan stains all hydrophobic environments in cells; therefore, it is challenging to characterize membrane properties in specific organelles or assess their responses to pharmacological treatments in intact cells. Here, we describe the synthesis and application of Laurdan-derived probes that read out the membrane packing of individual cellular organelles. The set of organelle-targeted Laurdans (OTL) localizes to the ER, mitochondria, lysosomes, and Golgi compartments with high specificity while retaining the spectral resolution needed to detect biological changes in membrane ordering. We show that ratiometric imaging with OTLs can resolve membrane heterogeneity within organelles as well as changes in lipid packing resulting from inhibition of trafficking or bioenergetic processes. We apply these probes to characterize organelle-specific responses to saturated lipid stress. While the ER and lysosomal membrane fluidity is sensitive to exogenous saturated fatty acids, that of mitochondrial membranes is protected. We then use differences in ER membrane fluidity to sort populations of cells based on their fatty acid diet, highlighting the ability of organelle-localized solvatochromic probes to distinguish between cells based on their metabolic state. These results expand the repertoire of targeted membrane probes and demonstrate their application in interrogating lipid dysregulation.
14915
Reposted by Itay Budin
Fleur Ferguson @fleurmferguson.bsky.social · 11/08/2025
Excited to share our latest work developing molecular glue degraders of ZBTB11, now out in @natchembio.nature.com www.nature.com/articles/s41...
nature.com
ZBTB11 depletion targets metabolic vulnerabilities in KRAS inhibitor-resistant PDAC - Nature Chemical Biology
Depletion of a transcriptional factor ZBTB11 using molecular glue degraders can overcome oxidative-phosphorylation-mediated KRAS inhibitor resistance in pancreatic ductal adenocarcinoma with low acute...
25116
Itay Budin @ibudin.bsky.social · 05/08/2025
Honored to be among this amazing group and be recognized for the early career research award in memory of Günter Blobel
10426
Reposted by Itay Budin
Zheng Shi @zs-biophys.bsky.social · 29/05/2025
We are looking for a postdoc to study biomolecular condensates and/or mechanosensitive membrane proteins. Please help spread the news 🙏 sites.rutgers.edu/shi-lab/look...
sites.rutgers.edu
Looking for a postdoc - Shi Lab
The Shi lab at Rutgers-New Brunswick is seeking a postdoctoral researcher to study biomolecular condensates and/or mechanosensitive membrane proteins. To see more information and apply, please go to t...
22419
Reposted by Itay Budin
Journal of Cell Science @jcellsci.bsky.social · 15/05/2025
Our Special Issue: Cell Biology of Mitochondria is complete. Explore our ToC: journals.biologists.com/jcs/issue/13... Our cover image highlights mitochondria (magenta) and DNA (cyan) in glioblastoma cells from Buckley et al. journals.biologists.com/jcs/article/... #JCSMitoSI #Mitochondria
Journal of Cell Science cover 
Special Issue on Cell Biology of Mitochondria
Guest Editors: Ana J. Garcia-Saez and Heidi McBride
Image of mitochondria (magenta) and DNA (cyan) in glioblastoma cells
1167
Reposted by Itay Budin
Journal of Cell Science @jcellsci.bsky.social · 12/05/2025
Kailash Venkatraman, Nicolas-Frédéric Lipp & @ibudin.bsky.social examine the similarities between prokaryotic intracytoplasmic membranes & mitochondrial IMs, & discuss whether cristae evolution has driven specialisation of the #mito lipidome. journals.biologists.com/jcs/article/... #JCSMitoSI
Bacterial ICMs exhibit internal invaginations that resemble eukaryotic cristae. (A)TEM images showing tubular cristae-like ICM compartments in free-living Desulfobacterota, and similar cristae-like ICM tubules in Desulfovibrio carbinolicus strains. The eukaryotic model organism S. cerevisiae exhibits tubular cristae structures, whereas the commonly used HEK293 cell line exhibits predominantly lamellar cristae structures. Scale bars: 500 nm.  (B) Eukaryotic mitochondria tend to exhibit lamellar, tubular or discoidal cristae morphology, whereas orders of the class alphaproteobacteria exhibit a range of ICM morphologies. Lamellar-like ICMs, which exhibit parallel cytoplasmic protrusions that do not contact the inner membrane, are commonly observed in nitrogen-fixing and several methanotrophic alphaproteobacteria.  (C)  This simplified and non-exhaustive cladogram indicates the two domains of life – bacteria and archaea – with proto-mitochondria emerging in early alphaproteobacteria. Eukaryogenesis is marked by the horizontal transfer (red dotted arrow) from Bacteria to Hordarchaeales in Asgard archaea. §, †, #, * and ‡ connect species listed in B to their respective clades in C.
32110
Reposted by Itay Budin
wombacherlab.bsky.social @wombacherlab.bsky.social · 25/04/2025
Happy to share our new publication in ACS Chemical Biology @pubs.acs.org reporting a new chemical biology tool – dual SLIPT! Congratulations to first author Kristina Bayer @XXX, all co-authors and collaborator Shige Yoshimura @XXX. Open Access: pubs.acs.org/doi/10.1021/... (1/5)
pubs.acs.org
Dual SLIPT–A Lipid Mimic to Enable Spatiotemporally Defined, Sequential Protein Dimerization
Spatiotemporal control of proteins is crucial for cellular phenomena such as signal integration, propagation, as well as managing crosstalk. In membrane-associated signaling, this regulation is often enabled by lipids, wherein highly dynamic, sequential recruitment of interacting proteins is key to successful signaling. Here, we present dual SLIPT (self-localizing ligand-induced protein translocation), a lipid-analog tool, capable of emulating this lipid-mediated sequential recruitment of any two proteins of interest. Dual SLIPT self-localizes to the inner leaflet of the plasma membrane (PM). There, dual SLIPT presents trimethoprim (TMP) and HaloTag ligand (HTL) to cytosolic proteins of interest (POIs), whereupon POIs fused to the protein tags iK6eDHFR, or to HOB are recruited. A systematic extension of the linkers connecting the two mutually orthogonal headgroups was implemented to overcome the steric clash between the recruited POIs. Using Förster resonance energy transfer (FRET), we verify that the resulting probe is capable of simultaneous binding of both proteins of interest, as well as their dimerization. Dual SLIPT was found to be particularly suitable for use in physiologically relevant concentrations, such as recruitment via tightly regulated, transient lipid species. We further expanded dual SLIPT to the photocontrollable dual SLIPTNVOC, by introducing a photocaging group onto the TMP moiety. Dual SLIPTNVOC enables sequential and spatiotemporally defined dimerization upon blue light irradiation. Thus, dual SLIPTNVOC serves as a close mimic of physiology, enabling interrogation of dynamic cytosol-to-plasma membrane recruitment events and their impact on signaling.
2208
Itay Budin @ibudin.bsky.social · 24/04/2025
Out today, we report how small chemical modifications in the metabolism of ergosterol are needed for yeast membranes to phase seperate into ordered yet fluid domains www.science.org/doi/10.1126/... (1/n)
science.org
Structural dissection of ergosterol metabolism reveals a pathway optimized for membrane phase separation
The metabolism of ergosterol shapes this lipid to allow the formation of fluid membrane domains in yeast cells.
37524
Itay Budin @ibudin.bsky.social · 23/04/2025
New evolution perspective/review piece on mitochondrial membranes in Journal of Cell Science. How did the mitochondrial lipidome evolve alongside the structure of cristae? Part of a special issue on mitochondria. @biologists.bsky.social #lipidtime journals.biologists.com/jcs/article/...
journals.biologists.com
Origin and evolution of mitochondrial inner membrane composition
Summary: An examination of the morphological similarities between prokaryotic intracytoplasmic membranes and mitochondrial inner membranes, and whether cristae evolution has driven specialization of t...
0125
Itay Budin @ibudin.bsky.social · 13/04/2025
A couple of weeks late (but before its in an issue!) but I want to highlight this exceptionally important paper from @leventallab.bsky.social in @cellpress.bsky.social on a new and fundamentally important model for the plasma membrane of mammalian cells www.cell.com/cell/abstrac...
cell.com
Cell membranes sustain phospholipid imbalance via cholesterol asymmetry
This work challenges a major assumption in cell biology by showing that lipid bilayers can have drastically different phospholipid abundances between their two leaflets. This lipid abundance asymmetry...
2194
Itay Budin @ibudin.bsky.social · 27/03/2025
Congrats to @jeremybaskin.bsky.social for receiving the ACS Chemical Biology young investigator award…plus organizing a fantastic session capped off with a tour de force talk on phosphatidic acid dynamics
0385
Reposted by Itay Budin
André Nadler @nadlerlab.bsky.social · 10/03/2025
Are lipids actively sorted during clathrin mediated endocytosis like proteins? @mathilda95.bsky.social addresses this key open question together with our collaborators from the Honigmann and Modes labs using a new Lipid-STED workflow. www.biorxiv.org/content/10.1...
211438
Itay Budin @ibudin.bsky.social · 14/02/2025
Lipidic valentine's day cookies!
190
Itay Budin @ibudin.bsky.social · 08/02/2025
In times like these, gotta look at all the positives of your work, like when your wonderful student makes you this #lipidtime mug:
0130
Reposted by Itay Budin
André Nadler @nadlerlab.bsky.social · 31/01/2025
It’s incredibly hard to study lipids in biological membranes on the nanoscale. You need near-perfect information on both membrane ultrastructure and lipid density, which usually isn’t attainable. Lipid-CLEM brought to you by @mathilda95.bsky.social changes that. www.biorxiv.org/content/10.1...
1223778
Reposted by Itay Budin
Luca Laraia @lucalaraia.bsky.social · 30/01/2025
This one is for the #lipidtime and #sterol enthusiasts: Endogenous and fluorescent sterols reveal the molecular basis for ligand selectivity of human sterol transporters, now published in the Journal of Lipid Research: sciencedirect.com/science/arti... 1/5
sciencedirect.com
Endogenous and fluorescent sterols reveal the molecular basis for ligand selectivity of human sterol transporters
Sterol transport proteins (STPs) play a pivotal role in cholesterol homeostasis and therefore are essential for healthy human physiology. Despite rece…
1156
Reposted by Itay Budin
Navtej Toor @navtejtoor.bsky.social · 22/01/2025
Congratulations to Dan Haack and Boris Rudolfs on the new paper from our lab about the development of a scaffold enabling high resolution cryo-EM structure determination of protein-free RNAs. www.nature.com/articles/s41...
nature.com
Scaffold-enabled high-resolution cryo-EM structure determination of RNA - Nature Communications
Determining structures of small, protein-free RNAs by cryo-EM has been challenging. Here, the authors use a group II intron scaffold to achieve high-resolution RNA structures, visualize ligand-induced...
0156
Itay Budin @ibudin.bsky.social · 15/01/2025
Snazzy new video on ctenophore lipids - now with instructional head group facial expressions!
061
Itay Budin @ibudin.bsky.social · 14/01/2025
A fantastic resource and perspective for the community. Thanks Jeremy and co for putting this together.
090
Reposted by Itay Budin
William Moore @moorrhizal.bsky.social · 05/01/2025
041
Itay Budin @ibudin.bsky.social · 25/12/2024
Best gift is getting very positive and constructive reviews that drop right on Christmas/Hanukkah eve 🎁
030
Reposted by Itay Budin
Sarah Cohen @cohenlaboratory.bsky.social · 15/12/2024
Thank you to all the speakers for fantastic talks! Hope to do this again next year.
0121
Itay Budin @ibudin.bsky.social · 11/12/2024
100% this
040
Reposted by Itay Budin
André Nadler @nadlerlab.bsky.social · 11/12/2024
Don't miss this exciting session! Katelyn will be representing our lab - and she will show really exciting, unpublished data.
0215
Reposted by Itay Budin
Sarah Cohen @cohenlaboratory.bsky.social · 11/12/2024
Heading to #CellBio2024? Do you love #lipids? Join us for an exciting subgroup on Lipids in Organelle Form and Function, Saturday at 1:45 PM! Lipid-themed happy hour to follow but you must attend the session to find out the location!
14613
Itay Budin @ibudin.bsky.social · 03/12/2024
So fun to team up with my new colleague and those in other projects cough* @cohenlaboratory.bsky.social *cough to investigate how organelles comminicate through their lipids
351