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Aditya Kamat

@adityakamat.bsky.social
110 followers 177 following 11 posts

Postdoctoral fellow at Rudner Lab, Harvard Medical School | PhD at Badrinarayanan Lab, NCBS Bangalore (TIFR)

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Reposted by Aditya Kamat
Divya Choudhary @divyach.bsky.social · 26/09/2026
Two preprints from my postdoc are now on bioRxiv! 1/Division of labor during bacterial warfare www.biorxiv.org/content/10.6... 2/Inherited flagellar structures coordinate the onset of swimming among related E. coli cells www.biorxiv.org/content/10.6...
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Andrew Savinov @biosavinov.bsky.social · 16/09/2026
Thrilled to announce that the Savinov lab is now live at UT Austin @utaustin.bsky.social! Our lab employs massively parallel experimental and AI methods to discover and design protein fragments as universal regulators of protein interactions in health and disease. www.savinovlab.com (1/n)
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Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Young Biophysicists Meeting @youngbiophymeet.bsky.social · 11/09/2026
Submission open for the 12th YBM Meeting (deadline - 28th September)! Abstract submission link: forms.gle/UK1fBmzGtLwn...
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Susan Schlimpert @s-lab.bsky.social · 04/09/2026
NLRs aren't just for immunity. Inspired by our colleagues working on plant NLRs, postdoc @maxljordan.bsky.social from my lab asked: Do bacterial NLR-type regulators found in antibiotic-producing #Streptomyces share a similar autoactivation switch? Turns out, yes! Read the full story and his 🧵👇
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Jan-Willem Veening @veeninglab.com · 03/09/2026
Clonal does not mean uniform. #MicroSky Our new review explores how genetically identical bacteria adopt different cell states, and how that diversity shapes survival, cooperation, antibiotic responses and gene transfer. 🧵 doi.org/10.1146/annu...
doi.org
Decoding Bistability and Drivers of Phenotypic Variation in Bacteria
In a process known as phenotypic heterogeneity or phenotypic variation, bacteria can produce distinct phenotypes within an isogenic population in response to shifting environmental conditions. Noise i...
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Martial Marbouty @mmarbout.bsky.social · 30/08/2026
🚨 ‼️ NEW PUBLICATION ‼️ While we start to know a lot about how bacterial genomes are organized in 3D, almost nothing is known about phage genome once it enters a bacterial cell. read the paper here: www.science.org/doi/10.1126/...
science.org
Bacteriophage PAK_P3 genome structuration and dynamics during infection of Pseudomonas aeruginosa reveal specific interaction patterns
While the dynamic changes in genome organization in cellular organisms have been well described, the three-dimensional (3D) folding of phage genomes during the infection of their host is extremely lim...
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Susan Schlimpert @s-lab.bsky.social · 25/08/2026
It is happening, and registration is open for the EMBO Workshop: Bacterial and archaeal cell division: diverse mechanisms and models. 20–23 April 2027 | Barga, Italy. Come and join us @awehenkel.bsky.social, @seamusholden.bsky.social, @s-lab.bsky.social ! Deadline: Jan 6, 2027. #Bacdiv27
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anna brogan @apbrogan.bsky.social · 18/08/2026
This is now published! For those interested in microbial mechanotransduction: www.cell.com/current-biol...
cell.com
Microbial GAIN domains undergo autoproteolysis and enable release of diverse cell-surface-associated proteins
Brogan and Rudner report the identification of a microbial autoproteolytic domain that is structurally homologous to the GAIN domain of eukaryotic adhesion GPCRs. Rather than participating in transmem...
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Paula Navarro @navarropaula.bsky.social · 03/07/2026
🚨 New in @natmicrobiol.nature.com! We reveal how the antibiotic target PBP1b fortifies the E.coli division site against osmotic rupture. Proud this was completed in our independent labs @dmf-unil.bsky.social, with @avettiger.bsky.social. Congratulations to all authors! 🦠❄️🔬 #teamtomo bit.ly/3SCbOg1 👇
doi.org
The penicillin-binding protein PBP1b fortifies the Escherichia coli division site against osmotic rupture - Nature Microbiology
A specific isoform of PBP1b functions independently of the activator protein, LpoB, to drive generation of a wedge-like peptidoglycan structure that strengthens the division site in Escherichia coli.
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Nitish Dua @nitishdua.bsky.social · 27/06/2026
Really hyped to share our pre-print on mtDNA replication-fission ! @nanigrotjahn.bsky.social (doi: doi.org/10.64898/202...) 🧵with details below ⤵️
doi.org
ATAD3A structurally links mtDNA replication and mitochondrial fission
Mitochondrial function depends on the maintenance of its genome, and disruptions in copy number and distribution are hallmarks of mitochondrial disorders. Mitochondrial DNA (mtDNA) replication is spat...
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Laurel Oldach @laureloldach.bsky.social · 11/06/2026
Microscopy nerd alert: two scopes in California can now do phase contrast cryoEM - potentially fixing the tech's very low signal/noise ratio. The phase filter they used is a laser. Which is also the brightest thing in the solar system (outside of the inside of the sun). cen.acs.org/analytical-c...
cen.acs.org
15 years, flawless mirrors, and the brightest laser in the world: How physicists brought phase contrast to cryo-EM
Phase contrast enables structures of smaller proteins, could drive in-cell proteomics
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The EMBO Journal @embojournal.org · 10/06/2026
CapK is a bacterial DNA damage-activated kinase that phosphorylates transcriptional repressor CapS to control adjacently-encoded anti-phage immune pathway genes in response to a universal stress signal, DNA damage @kevincorbett.bsky.social and colleagues link.springer.com/article/10.1...
link.springer.com
A DNA damage-activated kinase phosphorylates a transcriptional repressor to control bacterial immune pathway expression - The EMBO Journal
Bacteria encode numerous stress-response pathways that protect their hosts against both internal and external threats. A key question is how these pathways are regulated, especially anti-phage immune ...
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Marine Biological Laboratory @mblscience.bsky.social · 08/06/2026
Happy #MicroscopyMonday! This live image captures a larval sea anemone (Nematostella vectensis) that refracts light like a gemstone. The vibrant, true-color image highlights the organism’s birefringence. Imaged by @shribak.bsky.social) and @karenecheverri.bsky.social from the MBL’s Bell Center.
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STCmicrobeblog @stcmicrobeblog.bsky.social · 05/06/2026
it's summer, and time to go to the pool. our post next monday will be about bacteria that swim the backstroke. stay tuned... #MicroSky
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PLOS Biology @plosbiology.org · 05/06/2026
The T6SS is a widespread nanoweapon deployed by #bacteria, but why is it deployed heterogeneously? @cascaleslab.bsky.social &co show that #Ecoli adopt distinct #T6SS attacker "ON" & defender "OFF" roles to optimize survival, a key strategy in microbial warfare @plosbiology.org 🧪 plos.io/3S5dL45
Top: Representative confocal fields of the 3 types of TssC-GFP-TssK microcolonies (homogeneous ON, heterogeneous, homogeneous OFF). Scale bars, 10 μm. Bottom:  Model for the role of T6SS phenotypic heterogeneity in EAEC. Top: The Psci1 promoter integrates Fur- and Dam-dependent regulation, generating ON (T6SS⁺, yellow) and OFF (T6SS⁻, blue) subpopulations at a reversible equilibrium. Bottom left: OFF (blue) cells, which do not express T6SS, do not kill competitors but avoid triggering such defences (1). Due to the absence of killing activity, OFF cells are unable to colonize the niche (2). Bottom centre: While ON (yellow) cells assemble and deploy functional T6SS (1) and kill susceptible competitors (2), they provoke retaliatory attacks from defensive T6SS⁺ species (gray) and are eliminated and fail to colonize the niche (3). Bottom right: Heterogeneous ON/OFF population (1) optimizes colonization by killing neighboring cells (2). While ON (yellow) cells are eliminated by counterattacks by defensive T6SS+ species (gray), OFF (blue) cells resist (3) and can ensure a continuous supply of ON cells (4-5) while limiting population-wide exposure to retaliation.
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Mahipal Ganji @ganjilab.bsky.social · 28/05/2026
Bacteria don't need signaling cascades to rewire gene silencing. They use DNA 🧬 twist. ➕Overwind → H-NS forms a filament. ➖Underwind → H-NS bridges and silences. 📣Topology is the switch. See our preprint for more details: doi.org/10.64898/202...
H-NS transition between stiffening and bridging modes dictated by DNA superhelicity
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Young Biophysicists Meeting @youngbiophymeet.bsky.social · 11/05/2026
Submission open for the 11th YBM Meeting (deadline - 20th May)! Abstract submission link: t.co/8pCwjpO2Ml
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Jovana Kaljević ⬜️ @jovanakaljevic.bsky.social · 07/05/2026
My second postdoc paper in @tunglejic.bsky.social lab and two of my favorite things in the lab combined: ParB and killing bacteria. Thanks to everyone who helped make this project possible!
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Matthew Welch @mattwelchlab.bsky.social · 28/04/2026
Our most recent paper "Divergent Rickettsia species exhibit distinct mechanisms of actin-based motility" is now out in @jcb.org! Check it out here: rupress.org/jcb/article/...
Image of Rickettsia bacteria in yellow, in an infected cell expressing fluorescent actin in blue.
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Amelia McKitterick @amelia-mckitterick.bsky.social · 23/04/2026
Happy to share the finalized version of my paper on phage lysis in bacteria with unique envelopes! 🎉 Bacteriophages target membrane-anchored glycopolymers to promote host cell lysis and progeny release www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Kumaran Ramamurthi @ramamurthilab.bsky.social · 21/04/2026
Bacterial rRNAs are highly modified, but their functions are often mysterious. Zac Park says that methylation of 16S rRNA by MraW(RsmH) enhances translation of structured mRNAs. Thus, mRNA structure and rRNA modifications likely co-evolved to fine-tune protein dosage. www.biorxiv.org/content/10.6...
biorxiv.org
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Emma Banks @emmajbanks.bsky.social · 16/04/2026
Delighted to share our latest work on gene transfer agents (GTAs). We found a lysis control hub which allows GTAs to escape their bacterial host cells and transfer DNA 🧬 between bacteria. Thanks to @tunglejic.bsky.social, all co-authors, and our amazing collaborators! www.nature.com/articles/s41...
nature.com
A bacterial CARD–NLR-like immune system controls the release of gene transfer agents - Nature Microbiology
An immunity-like system functions as a lysis control hub to promote gene transfer agent particle release from host bacterial cells, suggesting that bacterial immune systems may be co-opted to promote ...
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Anthony Vecchiarelli @cellforganized.bsky.social · 13/04/2026
New preprint from the Vecchiarelli Lab! 🧵 Congratulations to first author Dr. Claire Dudley! @claire-dudley.bsky.social Claire uncovered a critical player in the organization for the photosynthetic cytoplasm of cyanobacteria - polyphosphate! #polyP www.biorxiv.org/content/10.6...
biorxiv.org
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Satyam Anand @satyamanand.bsky.social · 01/04/2026
Excited to share our latest work with Guanming Zhang and @stemartiniani.bsky.social in @natcomms.nature.com, where we uncover universal long-range structure in three distinct noisy particle systems spanning soft matter and machine learning. www.nature.com/articles/s41...
nature.com
Emergent universal long-range structure in random-organizing systems - Nature Communications
Noise is usually associated with disorder, but it can also generate large-scale order. Here, the authors show that three distinct systems, spanning soft matter and stochastic optimization, self-organi...
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Courtney Ellison @ckellison.bsky.social · 26/03/2026
I am pleased to share my lab’s latest publication - Acinetobacter species lack canonical DNA repair pathway activation mechanisms, and we discovered a conserved transcriptional activator that fills this role: academic.oup.com/nar/article/...
academic.oup.com
A WYL transcriptional regulator activates the DNA damage response pathway in Acinetobacter species
Abstract. The ability to sense DNA damage and activate DNA damage response pathways is critical for repairing DNA damage in all domains of life. The most w
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Félix Ramos-León @felixrl.bsky.social · 13/03/2026
Our work on understanding how Staphylococcus aureus mode of cell division contributes to pathogenesis is now available in bioRxiv
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Young Biophysicists Meeting @youngbiophymeet.bsky.social · 06/03/2026
Submission open for the tenth YBM Meeting (deadline - 26th March)! Abstract submission link: forms.gle/SBeQeAp9MR2U...
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Oded Rechavi @odedrechavi.bsky.social · 26/02/2026
It’s finally out! Together with @embopress.org and @reviewcommons.org, we conducted a structured side-by-side comparison of human peer review and our AI scientific review (see thread 👇👇👇🔥).
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Tom McLean @tommclean.bsky.social · 25/02/2026
Come do a PhD with me and @trevor-lithgow.bsky.social at @monashuniversity.bsky.social ! We’re at the leading edge of pathogen biology using cutting edge Cryo-EM and AI-driven genetic screens to uncover the mysteries of outer membrane biology. Reach out to me for a chat! macsys.org/phd-scholars...
macsys.org
PhD Scholarship at Monash University - MACSYS
Do cutting-edge research at the intersection of cryo‑EM, genome-wide profiling, and AI-driven modelling. Work with world‑class cryo-EM/cryo-ET imaging and AI tools to discover how the dangerous bacter...
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Erin Goley @goleylab.bsky.social · 23/02/2026
Exciting line up of talks for CauloCon 2026 - includes keynotes from @brunlabcaulo.bsky.social @lamasonlab.bsky.social and @thanbichlerlab.bsky.social! Hear work from Isaac Payne and Trung Nguyen, 2 students in my lab, on Weds and Thurs. 🤩
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Benjamin Wolfe @benwolfe.bsky.social · 12/02/2026
The science writing over at @asimovpress.bsky.social is fantastic! From the origin of the lab vortex, to the history of Xenopus, their content is creative, beautiful, and thoughtfully researched. Consider assigning some of their pieces in science courses. www.asimov.press/p/vortex?utm...
asimov.press
Making the Vortex Mixer
The forgotten story of an invention found in every biology lab.
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Divya Choudhary @divyach.bsky.social · 11/02/2026
1/ With @maxencevincent.bsky.social, we ask: when single bacterial cells behave differently under stress, is it really just “noise”? Read more @cp-cellreports.bsky.social : Unveiling hidden variables in stressed bacteria (doi.org/10.1016/j.ce...)
doi.org
Redirecting
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Erin Goley @goleylab.bsky.social · 02/02/2026
Hey alpha aficionados - it's almost time for CauloCon 2026! This free, virtual meeting will feature talks from @brunlabcaulo.bsky.social @thanbichlerlab.bsky.social and @lamasonlab.bsky.social with opps for trainee talks. Register using the link below. 👇
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Journal of Cell Biology @jcb.org · 29/01/2026
#Addendum to 1970 paper, “CYTOPLASMIC FILAMENTS OF AMOEBA PROTEUS: I. The Role of Filaments in Consistency Changes and Movement,” includes eight video sequences originally recorded on 16-mm films. No technology was available at the time to include this data. 🎞️ rupress.org/jcb/article/... #Actin
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Young Biophysicists Meeting @youngbiophymeet.bsky.social · 05/01/2026
Submission open for the eighth YB Meeting (deadline - 21st January)! Abstract submission link: forms.gle/SBeQeAp9MR2U...
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Christina Stallings @stallingslab.bsky.social · 06/01/2026
Registration is open for the 2026 Gordon Research Conference on Microbial Stress Response to be held on July 19-24 2026!! Submit your abstract by February 15th to be considered for a short talk. Apply now before it fills up!! Hope to see you there!! www.grc.org/microbial-st...
grc.org
2026 Microbial Stress Response Conference GRC
The 2026 Gordon Research Conference on Microbial Stress Response will be held in South Hadley, Massachusetts. Apply today to reserve your spot.
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Kristina Jonas @krijonas.bsky.social · 12/12/2025
Excited to see our new work published! We have established the evolutionary and ecological context of our favorite model Caulobacter and made some unexpected findings. Who would have thought that close relatives lack dimorphism? And have potential for phototrophy? www.nature.com/articles/s41...
nature.com
Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales - Nature Communications
This study maps out the diversity and evolution of the bacterial order Caulobacterales, including the model organism C. crescentus, which reveals widespread phototrophy and illuminates the evolution o...
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STCmicrobeblog @stcmicrobeblog.bsky.social · 10/12/2025
indeed, 𝘙𝘶𝘨𝘰𝘴𝘪𝘵𝘢𝘭𝘦𝘢 𝘰𝘳𝘺𝘻𝘢𝘦 looke like fusilli, which are notably better at holding on salsa di pomodoro than spaghetti... and as pasta addicts, we fell instantly in love with the shape of this newly described alphaproteo from the Rhizobiales 🤭 #MicroSky
screen capture from https://fems-microbiology.org/femsmicroblog-new-bacteria-identified-in-2025/
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PLOS Biology @plosbiology.org · 05/12/2025
The bacterial #SOSresponse unfolds in a defined temporal order, but how does this arise? @adityakamat.bsky.social @anjbadri.bsky.social &co show that intrinsic #promoter strength, modulated by #SigmaFactor usage, governs timing of SOS gene activation in Caulobacter @plosbiology.org 🧪 plos.io/4oAKf0Q
Comparative analysis of the Caulobacter SOS response under mitomycin-C damage. Top left: Schematic summarizing the RNA-sequencing experiment. Caulobacter cells were treated with 0.25 μg/ml mitomycin-C for 20 and 40 min (Created in BioRender). Samples were collected for transcriptomic analysis before (0 min, control), and at 20 and 40 min post damage induction. Top right: Venn diagram representing the genes that meet the listed criteria: 1. Genes induced in wild type cells under MMC damage at 40 min (white circle). 2. Genes induced in ΔlexA in the absence of damage (blue circle). 3. Genes not induced in ΔrecA background under MMC damage at 40 min (gray circle). Genes fulfilling all three criteria are in the gray circle. Number of genes in each category is indicated. Bottom left: Bar graph indicating whether promoters of the shortlisted genes exhibit binding by the LexA protein as assessed from ChIP-seq analysis [10]. Bottom right: LexA ChIP-seq profile for genes belonging to the SOS response. Normalized reads (in rpm) are represented for 500 bp upstream and downstream of the gene CDS.
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Aditya Kamat @adityakamat.bsky.social · 10/12/2025
1/Now published! We identify a novel regulatory layer underlying SOS response dynamic. Find a short summary about our findings below. journals.plos.org/plosbiology/... #MicroSky
journals.plos.org
Variability in intrinsic promoter strength underlies the temporal hierarchy of the Caulobacter SOS response induction
The bacterial SOS response unfolds in a defined temporal order, but the determinants of this hierarchy are unclear. This study shows that intrinsic promoter strength, modulated in part by sigma factor...
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Tung Le @tunglejic.bsky.social · 04/12/2025
Now published. Thank you very much to our collaborative team, and very supportive editors and reviewers!!! www.pnas.org/doi/10.1073/...
pnas.org
Versatile NTP recognition and domain fusions expand the functional repertoire of the ParB-CTPase fold beyond chromosome segregation | PNAS
Nucleotide triphosphate (NTP)-dependent molecular switches regulate essential cellular processes by cycling between active and inactive states thro...
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Jie Xiao @jiexiaolab.bsky.social · 25/11/2025
‘Chromosomal Topological Domain Formation Modulates Transcription and the Coupling of Neighboring Genes in Escherichia coli‘ by Drs. Nico Yehya, Christopher Bohrer, and collaborators, is now available on bioRxiv. Check it out! doi: doi.org/10.1101/2025...
doi.org
Chromosomal Topological Domain Formation Modulates Transcription and the Coupling of Neighboring Genes in Escherichia coli
Chromosomal topology and transcription are tightly coupled, yet the quantitative impact of topological constraints on transcription, supercoiling, and the potential coupling between neighboring genes ...
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Tanmay Bharat @tbharat-lab.bsky.social · 13/11/2025
Assembly, architecture and functional roles of microbial surface layers Review article published in @natrevmicro.nature.com with @bupbuse.bsky.social, Andriko von Kügelgen and @vikramalva.bsky.social. S-layers are everywhere! www.nature.com/articles/s41...
nature.com
Assembly, architecture and functional roles of microbial surface layers - Nature Reviews Microbiology
Surface layers (S-layers) are ubiquitous protein assemblies that coat prokaryotic cells, with their functional roles increasingly coming into focus. In this Review, Isbilir and colleagues discuss rece...
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Julie Biteen @juliebiteenlab.bsky.social · 21/10/2025
Thrilled to share our multidisiplinary work on how genome-wide DNA bridging by H-NS reshapes the stationary phase bacterial nucleoid and affects the transcriptional landscape. With Xindan Wang and @meyerroc.bsky.social www.biorxiv.org/content/10.1...
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Tung Le @tunglejic.bsky.social · 11/10/2025
new preprint from our group & Antoine Hocher: www.biorxiv.org/content/10.1... A fantastic collaboration with Antoine, with Jovana Kaljevic' initiated the collaboration and drives the project.
biorxiv.org
Versatile NTP recognition and domain fusions expand the functional repertoire of the ParB-CTPase fold beyond chromosome segregation
Nucleotide triphosphate (NTP)-dependent molecular switches regulate essential cellular processes by cycling between active and inactive states through nucleotide binding and hydrolysis. These mechanis...
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Tung Le @tunglejic.bsky.social · 03/10/2025
Independent research fellowships leading to tenured positions at the John Innes Centre. Repost = nice. Thank you very much!!!
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Erin Goley @goleylab.bsky.social · 20/09/2025
🚨🚨🚨Calling all Caulophiles and Alpha aficionados - stayed tuned for a virtual CauloCon in early 2026. And HOPEFULLY an in person alpha meeting in 2027!! DM me or @chienlab.bsky.social w questions or to stay in the know.
media.tenor.com
two men are standing next to each other and one of them is saying `` you wanna hang out shoot the breeze ''
ALT: two men are standing next to each other and one of them is saying `` you wanna hang out shoot the breeze ''
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Géraldine Laloux @lalouxlab.bsky.social · 17/09/2025
🚨New paper out! #MicroSky Studying obligate predators like Bdellovibrio bacteriovorus is tricky—essential genes for predation are also essential for survival. We expanded its genetic toolbox: 🧬promoters to fine-tune expression 🧬IPTG-inducible system 🧬CRISPRi for rapid knockdown bit.ly/46GUn2c 1/4
academic.oup.com
Expanding the genetic toolbox of the obligate predatory bacterium Bdellovibrio bacteriovorus with inducible gene expression and CRISPR interference
Inducible gene expression and CRISPR interference-mediated depletion in the predatory bacterium Bdellovibrio bacteriovorus.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 21/08/2025
N6-methyladenine modification of DNA enhances RecA-mediated homologous recombination www.pnas.org/doi/10.1073/...
pnas.org
N6-methyladenine modification of DNA enhances RecA-mediated homologous recombination | PNAS
Both DNA methylation and homologous recombination (HR) are extensively studied. In bacteria, Dam methylation is the most studied DNA modification, ...
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