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jake

@mediocre-jake.bsky.social
210 followers 419 following 43 posts

Postdoc interested in #ubiquitin #lipid #innateimmunity #E3ligases #endoplasmicreticulum findaresearcher.wehi.edu.au/chua.n Postdoc (WEHI) www.wehi.edu.au/laboratory/feltham-… PhD (UNSW) x.com/brownlabunsw?lang=en&mx=

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Reposted by jake
Marco Jochem @marcojochem.bsky.social · 23/04/2026
Interested in non-proteinaceous ubiquitination, induced proximity or glycogen? Then you should have a look at our newest article, “Ubiquitination of glycogen and metabolites in cells and tissues”, just published in Nature: www.nature.com/articles/s41...
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Waggoner Lab @labwaggoner.bsky.social · 04/04/2026
Resource @cellcellpress.bsky.social @wehi-research.bsky.social @mediocre-jake.bsky.social The E3-ome gene-centric compendium reveals the human E3 ligase landscape www.cell.com/cell/fulltex...
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Cell - a Cell Press journal @cp-cell.bsky.social · 21/03/2026
Now online! The E3-ome gene-centric compendium reveals the human E3 ligase landscape
dlvr.it
The E3-ome gene-centric compendium reveals the human E3 ligase landscape
The E3-ome defines the human repertoire of ubiquitin E3 ligases, creating a unified resource that maps their diversity across the ubiquitin and ubiquitin-like systems. By consolidating fragmented knowledge, this framework provides a foundation for studying ubiquitin signaling and accelerating discovery.
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Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 30/03/2026
New Online! STING signalling as a mediator between lipid metabolism and innate immunity
dlvr.it
STING signalling as a mediator between lipid metabolism and innate immunity
Nature Reviews Molecular Cell Biology, Published online: 30 March 2026; doi:10.1038/s41580-026-00967-zThis Comment discusses the bidirectional interplay between STING signalling and lipid homeostasis, highlighting the emerging therapeutic relevance of this regulatory network.
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Journal of Experimental Medicine @jem.org · 24/03/2026
Vila, Messaoud-Nacer, Taffoni, @nadinelaguette.bsky.social et al show that DNA-PKcs, a major DNA damage response actor, interacts w/ cyclic dinucleotides through its kinase domain, ensuring CDN-associated signal termination, while CDNs inhibit DNA-PKcs catalytic activity rupress.org/jem/article/...
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bioRxiv Cell Biology @biorxiv-cellbio.bsky.social · 31/03/2026
Ubiquitin ligase CHFR impairs Tie2 signaling via K48-linked ubiquitylation and degradation of Akt1 in endothelial cells www.biorxiv.org/content/10.64898/20…
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Jane Dudley @janedudley.bsky.social · 23/03/2026
So delighted to have been part of this fantastic collaboration spearheaded by Ngee Kiat 'Jake' Chua (蔡毅杰) and Rebecca Feltham! Congratulations on bringing together so many experts in the field to make such an important resource 🎉 it has been a pleasure! www.sciencedirect.com/science/arti...
sciencedirect.com
The E3-ome gene-centric compendium reveals the human E3 ligase landscape
To define and systematically characterize the human E3 ubiquitin ligase (E3) landscape, we generated the E3-ome, a compendium of E3s encoded by the hu…
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jake @mediocre-jake.bsky.social · 04/04/2026
Amazing to be able to work with the team in Otago Many fundamental discoveries on what we know about RING E3s were made by Peter Mace at Catherine Day in New Zealand Always a pleasure to go back to basics and apply it with a modern lens @otagobiochemist.bsky.social
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jake @mediocre-jake.bsky.social · 04/04/2026
Out on the 2nd April 2026 issue of Cell Should really build a Bluesky thread around the E3-ome development Thanks for sharing! It wasn't a straightforward path so many more cool E3s to be uncovered!
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Komander Lab @komanderlab.bsky.social · 23/03/2026
Congratulations Jake @mediocre-jake.bsky.social, Bekky Feltham and team on their phenomenal effort in putting together the E3-ome, published in Cell www.cell.com/cell/fulltex.... An extremely valuable resource for ubiquitin researchers.
cell.com
The E3-ome gene-centric compendium reveals the human E3 ligase landscape
The E3-ome defines the human repertoire of ubiquitin E3 ligases, creating a unified resource that maps their diversity across the ubiquitin and ubiquitin-like systems. By consolidating fragmented know...
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Yamuna Krishnan @krishnanyamuna.bsky.social · 23/03/2026
A breakthrough in lipid imaging: spatial lipid distributions in organelles! Fantastic work from @nadlerlab.bsky.social 🤯
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Lucas Farnung @lucas.farnunglab.com · 18/03/2026
Glückwunsch, Bruderherz! Really outstanding work by @bartellab.bsky.social and Schulman Lab. This is how transatlantic research is done 🇺🇸🇩🇪.
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Waggoner Lab @labwaggoner.bsky.social · 18/03/2026
Cofilin-1 is a redox-sensitive guard of the NLRP3 inflammasome @natimmunol.nature.com www.nature.com/articles/s41...
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Jess Niblo @jessniblo.bsky.social · 18/03/2026
Ever wonder how IDRs and folded domains work together to control function? Using ubiquilins, multidomain proteins involved in protein degradation, we show in our new preprint that IDRs aren’t just linkers, but regulate ensemble and function. Read it here: doi.org/10.64898/202...
biorxiv.org
Intramolecular interactions between folded and disordered regions shape ubiquilin structure and function
Multidomain proteins consist of folded domains connected by intrinsically disordered regions. The flexibility afforded by the disordered regions coupled to the structure and surface chemistry of folded regions allows for unique structural and functional features in these proteins. Yet how intramolecular interactions between disordered regions and folded domains affect multidomain protein structure and function remain poorly understood. Here we use a range of biophysical and computational approaches to measure the intramolecular interactions between the folded domains and disordered regions of ubiquilins (UBQLNs) - essential components of protein quality control that shuttle poly-ubiquitinated client proteins to proteasomal degradation or autophagy. Starting with the yeast UBQLN homolog Dsk2, we find that interactions between two folded domains located at the opposite ends of UBQLN bring about a closed conformation. The prevalence of this closed conformation, however, is modulated by intramolecular interactions involving the disordered regions and folded STI1 domain at the center of the protein. Simulations and analysis of UBQLN homologs across multiple eukaryotic lineages reveals that these disordered:folded domain interactions exist in some UBQLN homologs but are absent in others, indicating possible fundamental differences in function among proteins with the same multidomain architecture. ### Competing Interest Statement The authors have declared no competing interest.
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Proteostasis UK @proteostasisuk.bsky.social · 18/03/2026
UK Proteostasis Meeting 2026 – Reminder: Register Today
 📅 20–21 July 2026 at The Francis Crick Institute, London 🗓 Abstract deadline: 1 May 2026
 💷 Fees: £45 (Student/Postdoc) | £75 (Group Leader) 🔗 Register: forms.gle/dWz2qztKgftB...
 🔗 Payment: www.eventbrite.co.uk/e/uk-proteos...
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Journal of Cell Biology @jcb.org · 15/03/2026
In this Perspective, North, @doroteaartscience.bsky.social, Shoemaker et al. highlight the rapidly expanding role of LC3-interacting regions in autophagy. rupress.org/jcb/article/... 📕 Part of #Autophagy 2026 👉 rupress.org/jcb/collecti... #GRC
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paulschanda.bsky.social @paulschanda.bsky.social · 14/03/2026
Scientists: How long have you waited for journal editors to decide whether the journal sends your manuscript out for review? I’m at 2+ months with a “prestigious” journal — not easy when working in a competitive field. What’s the longest you’ve experienced? #AcademicPublishing #PeerReview
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James Olzmann @olzmannlab.bsky.social · 13/03/2026
1/3 Thrilled to see our paper led by Kirandeep Deol is out in Nature Structural & Molecular Biology! CRISPR screens to uncover a role for vitamin B2 metabolism in stabilizing FSP1 via FAD, revealing a new way vitamins regulate ferroptosis. www.nature.com/articles/s41...
nature.com
Vitamin B2 metabolism promotes FSP1 stability to prevent ferroptosis - Nature Structural & Molecular Biology
Here, Deol et al. use genetic screens in gene-edited reporter cell lines to identify regulators of ferroptosis suppressor protein 1 (FSP1) expression and stability. They show that vitamin B2 metabolis...
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jake @mediocre-jake.bsky.social · 13/03/2026
Lipids Meet Immunity: Metabolic Control of cGAS-STING Having worked in lipid metabolism and cGAS-STING, I have an appreciation for the regulation of cGAS-STING by lipids, which I co-wrote. www.mdpi.com/2813-7086/3/... @wehi-research.bsky.social @sahmri.bsky.social
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jake @mediocre-jake.bsky.social · 13/03/2026
Lipids Meet Immunity: Metabolic Control of cGAS-STING Having worked in lipid metabolism and cGAS-STING, I have an appreciation for the regulation of cGAS-STING by lipids, which I co-wrote. www.mdpi.com/2813-7086/3/... @wehi-research.bsky.social @sahmri.bsky.social
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Haselbach Lab @haselbachlab.bsky.social · 12/02/2026
This is a video summarizing our recent paper (www.nature.com/articles/s41...) youtu.be/eNY2CRlYTRo
nature.com
A multivalent adaptor mechanism drives the nuclear import of proteasomes - Nature Communications
Nuclear protein homeostasis relies on proteasome import into the nucleus. Here the authors identify how assembled human proteasomes are transported across the nuclear pore complex and reveal a mechani...
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Hemmo Meyer Lab @hemmo-lab.bsky.social · 11/03/2025
New VCP/p97 review article. Report on the excellent VCP meeting at CalTech last year and great overview on VCP and VCP disease. doi.org/10.1016/j.nb...
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SFB Targeted Protein Degradation @sfb-tpd-vienna.bsky.social · 10/01/2026
Thrilled to be hosting Brenda Schulman, @aakritijain.bsky.social, @crismayorruiz.bsky.social @davidbalchin.bsky.social, @hemmo-lab.bsky.social, Ian Ganley, @kirsteinlab.bsky.social, Juliette Fedry, @elliottlab.bsky.social & @plantophagy.bsky.social - BIG THANKS for accepting the invitation 🙏
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Hemmo Meyer Lab @hemmo-lab.bsky.social · 06/03/2026
VCP/p97’s accessory adapters (FAF1, FAF2, UBXN7) boost unfolding and subsequent proteasomal degradation. #ubiquitin. Our paper is out now: Science Advances www.science.org/doi/10.1126/...
science.org
The accessory adapters FAF1, FAF2, and UBXN7 accelerate proteasomal degradation by increasing prior p97-mediated substrate unfolding
A group of accessory adapters positions the p97 adapter Ufd1 to boost substrate unfolding and subsequent proteasomal degradation.
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Leo Kiss @leokiss.bsky.social · 05/03/2026
I am incredibly excited to share that I will start my independent lab at the @unidue-zmb.bsky.social at the @unidue.bsky.social as Junior Professor of Cellular Biochemistry. Research in my lab has the goal to decipher the ubiquitin code! There are multiple open positions! (1/3)
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Izidor Sosič @sosicizi.bsky.social · 10/03/2026
Allosteric PROTACs: Expanding the Horizon of Targeted Protein Degradation | Journal of the American Chemical Society pubs.acs.org/doi/10.1021/...
pubs.acs.org
Allosteric PROTACs: Expanding the Horizon of Targeted Protein Degradation
Proteolysis-targeting chimeras (PROTACs) have transformed the concept of chemical intervention in biological systems by co-opting the ubiquitin–proteasome system to selectively degrade proteins. A key...
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Hana Antonicka @hantonicka.bsky.social · 04/03/2026
The date on the poster says February 5…should be March 5, right?
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Natalie Niemi @nieminm.bsky.social · 03/03/2026
Super excited to present out work at @mitotalks.bsky.social this Thursday!! Hope to see you there!
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Biophysical Society @biophysicalsoc.bsky.social · 25/02/2026
Congratulations to the winners of this year's Art of Science Image contest at #bps2026 🥇 1st Place: Yupeng Li, University of Illinois Urbana-Champaign 🥈 2nd Place: Jessica Heebner, Thermo Fisher Scientific 🥉 3rd Place: Sohaib Abdul Rehman, Harvard University
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Waggoner Lab @labwaggoner.bsky.social · 26/02/2026
Temporal proteomic and phosphoproteomic dynamics during neuronal differentiation of iPSC www.science.org/doi/10.1126/...
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James Olzmann @olzmannlab.bsky.social · 25/02/2026
Sooo happy to share our new paper in @nature.com “CLCC1 promotes hepatic neutral lipid flux and nuclear pore complex assembly.” A terrific collaboration with @arrudalab.bsky.social, led by co–first authors Alyssa Mathiowetz and Emily Maymand. www.nature.com/articles/s41...
nature.com
CLCC1 promotes hepatic neutral lipid flux and nuclear pore complex assembly - Nature
CRISPR–Cas9 screening identifies CLCC1 as a factor that increases neutral lipid flux to prevent hepatic steatosis and promotes nuclear pore complex assembly by promoting membrane bending and fusi...
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The EMBO Journal @embojournal.org · 25/02/2026
The cholesterol transfer protein STARD3 regulates late-endosome positioning via a GSK3-controlled phosphorylation switch Catherine Tomasetto, @fabienalpy.bsky.social link.springer.com/article/10.1...
link.springer.com
STARD3 regulates lysosome positioning and contacts via a GSK3-controlled phosphorylation switch - The EMBO Journal
Membrane contact sites (MCS) are dynamic regions where the membranes of two organelles come into close apposition. MCSs play many roles in cellular homeostasis by facilitating inter-organelle lipid ex...
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Nature Portfolio @natureportfolio.nature.com · 24/02/2026
A Review in Nature Reviews Psychology summarizes how visual signals, feedback and multi-party interactions contribute to language processing during conversation and require further study. 🔒
go.nature.com
Psycholinguistic perspectives on face-to-face conversation - Nature Reviews Psychology
Language production and comprehension are often studied as separate processes, but they are intertwined in naturalistic conversation. In this Review, Holler and Kuhlen summarize how visual signals, feedback and multi-party interactions contribute to language processing and require further study.
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Pieter Dorrestein @pieterdorrestein.bsky.social · 12/06/2025
This is such an incredible paper. Must read if you care about metabolites and cores organ interactions. For me most interesting finding is that the liver is NOT the only organ that converts cholesterol to bile acids. But ther are so many cool onserbwtions www.cell.com/cell/abstrac...
cell.com
Cross-organ metabolite production and consumption in healthy and atherogenic conditions
An atlas mapping organ-specific metabolite production and consumption across various pathophysiological states in pigs shows impaired metabolic activity across organs by a Western diet or hypercholest...
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htw @heniek-htw.bsky.social · 01/05/2025
Mitochondria-organelle crosstalk in establishing compartmentalized metabolic homeostasis www.cell.com/molecular-ce...
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Hoy Lipid Metabolism Lab @hoylipidlab.bsky.social · 24/02/2026
1/ Updated preprint (v2) out on bioRxiv! A wonderful team effort with @nancyts.bsky.social, Lake-Ee Quek and others. “Capacity-Contribution Paradox: Fatty Acid Oxidation Compensates for Low Glucose-Derived Acetyl-CoA in Cancer” Link: www.biorxiv.org/content/10.1...
biorxiv.org
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Beatrix Goggin @beatrixgoggin.bsky.social · 24/02/2026
This is SO COOL!!! academic.oup.com/bioinformati...
academic.oup.com
The Lipid Interactome: an interactive and open access platform for exploring cellular lipid–protein interactions
AbstractSummary. Lipid–protein interactions play essential roles in cellular signaling and membrane dynamics, yet their systematic characterization has lon
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Nature @nature.com · 23/02/2026
Regenerative medicines are headed for people with Parkinson’s disease or severe heart failure — but researchers are concerned about minimal clinical-trial data go.nature.com/4cKk3yp
go.nature.com
First-of-a-kind stem cell therapies set for approval in Japan
Regenerative medicines are headed for people with Parkinson’s disease or severe heart failure — but researchers are concerned about minimal clinical-trial data.
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bioRxiv Genetics @biorxiv-genetic.bsky.social · 10/02/2026
A Functional Genetic Atlas of Parkin Resolves Variants of Uncertain Significance and Predicts Parkinson's Disease Age at Onset www.biorxiv.org/content/10.64898/20…
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jake @mediocre-jake.bsky.social · 19/02/2026
Very interesting Would be good to adopt these method for other E3s
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 16/02/2026
Happy to share our newest preprint on Parkin missense variants in work led by Erna Sol & @vvouts.bsky.social in @rhp-lab.bsky.social Using a multiplexed assay we determined the effects of 9,212 out of 9,300 single amino acid substitutions and nonsense Parkin variants. 1/n doi.org/10.64898/202...
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jake @mediocre-jake.bsky.social · 18/02/2026
An impressive effort Really important to help guide E3 experiments and further insights
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Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 17/02/2026
We posted a biorxiv preprint on structural bioinformatics, AlphaFold modeling & machine learning on predicting specificity of E3 ligase ring domains for different E2 enzymes. 1/4 Preprint: www.biorxiv.org/content/10.6... Models/data (UbiqCore website): dunbrack.fccc.edu/ubiqcore
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Nature Chemical Biology @natchembio.nature.com · 17/02/2026
Polymerization-inducing chimeras (PINCHs) are a novel bifunctional modality that sequesters target homodimers in a polymeric state, thereby inhibiting their function www.nature.com/articles/s41...
nature.com
A pharmacological modality to sequester homomeric proteins - Nature Chemical Biology
Polymerization-inducing chimeras are a novel bifunctional modality that uses protein symmetry to sequester targets by forming insoluble supramolecular assemblies. This approach overcomes reliance on a...
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versteegga.bsky.social @versteegga.bsky.social · 17/02/2026
Our paper is out in @natcomms.nature.com! APOBEC3s drive mutagenesis in cancer. We uncover a novel pathway keeping them in check. The key is APOBEC3 binding of cellular RNAs, which simultaneously controls their nuclear localization and shields them from degradation. Read it here: rdcu.be/e4qaa
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Waggoner Lab @labwaggoner.bsky.social · 12/02/2026
Neuroimmunometabolism in Health and Disease Review @annualreviews.bsky.social www.annualreviews.org/content/jour...
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Devanshi Gupta @devanshigupta.bsky.social · 22/12/2025
All good things come in pairs... Proud to share our work in @cp-cellreports.bsky.social and @cp-iscience.bsky.social An end to an era on a high note 🥂
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BIOLuM Montpellier @biolum-montpellier.bsky.social · 02/12/2025
XIII-ZOMES & 11th Proteasome Joint Meeting 📍 Montpellier, South of France 📅 27–30 April 2026 www.biolum.cnrs.fr/animation-sc... Focus on proteasome, COP9 signalosome & eIF3 (PCI) in protein homeostasis/pathology, with great speakers + selected talks. Info/registration: 13-zomes.sciencesconf.org
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Waggoner Lab @labwaggoner.bsky.social · 11/02/2026
TRIM21 amplifies IL-17A signaling in cardiac fibroblasts through TRAF3 degradation, forming a self-reinforcing positive feedback loop @pnas.org www.pnas.org/doi/10.1073/...
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Nature @nature.com · 11/02/2026
Nature research paper: CSN5i-3 is an orthosteric molecular glue inhibitor of COP9 signalosome go.nature.com/4kwdCRy
go.nature.com
CSN5i-3 is an orthosteric molecular glue inhibitor of COP9 signalosome - Nature
An orthosteric CSN inhibitor gains nanomolar potency via a molecular-glue mechanism, stabilizing a CSN5–N8–inhibitor complex that confers substrate-dependent inhibition despite weak free-enzyme affinity.
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