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Otago Biochemistry

@otagobiochemist.bsky.social
194 followers 119 following 559 posts

Department of Biochemistry at the University of Otago Te Tari Matū Koiora, Ōtākou Whakaihu Waka

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Otago Biochemistry @otagobiochemist.bsky.social · 14h
Latest publication from Otago Biochemistry. Altered physiology of drug-resistant Mycobacterium tuberculosis restricts adaptation to host-relevant conditions and produces condition-dependent collateral vulnerabilities journals.asm.org/doi/10.1128/...
journals.asm.org
Altered physiology of drug-resistant Mycobacterium tuberculosis restricts adaptation to host-relevant conditions and produces condition-dependent collateral vulnerabilities | mBio
Mutations that provide antibiotic resistance in bacterial pathogens often disrupt key cellular processes. The effects of these disruptions on cellular physiology are poorly understood, especially with...
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Otago Biochemistry @otagobiochemist.bsky.social · 01/10/2026
Congrats to Otago Biochemists Hamish Salvesen and Ross Eaglesfield - part of the first cohort of researchers selected for the Impact Cluster programme just launched by Genetics Otago to support staff working in the genetic sciences to progress their careers. www.otago.ac.nz/news/newsroo...
otago.ac.nz
Biotechnology that delivers real benefits for New Zealanders
Some of Otago’s mid-career researchers will benefit from a new initiative to help New Zealand make the most of emerging biotechnology discoveries.
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Otago Biochemistry @otagobiochemist.bsky.social · 30/09/2026
Journal Club - Fri 2 Oct 12pm, Rm BIG13 Matthias Fellner: Science or fiction? Shadowy ‘paper mills’ let you pay to be a published author – of fraudulent research www.pnas.org/doi/10.1073/... Tyla Hill-Moana: Fighting poison with poison? journals.plos.org/plosbiology/...
doi.org
The entities enabling scientific fraud at scale are large, resilient, and growing rapidly | PNAS
Science is characterized by collaboration and cooperation, but also by uncertainty, competition, and inequality. While there has always been some c...
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KnitMeAThneed @thneed.bsky.social · 30/09/2026
@universityofotago.bsky.social @otagobiochemist.bsky.social @zoologyotago.bsky.social @otagoreligion.bsky.social It's a beautiful day to go and take a photo of a student flat so you can enter the Wiki Loves Scarfie Flats photo competition tomorrow! w.wiki/UYBq for more info and to register
Wiki Loves Scarfie Flats Want your flat to be immortalised? Get it into Wikimedia Commons and be in to win, 1–23 October 2026
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Compound Interest | Chemistry infographics @compoundchem.com · 29/09/2026
Wake up and smell the coffee on #NationalCoffeeDay! Here are some of the compounds that give coffee its distinctive aroma: www.compoundchem.com/2015/02/17/c... ☕️ #ChemSky 🧪
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 29/09/2026
Celebrate #NationalCoffeeDay with this video. Both adenosine and caffeine bind to adenosine receptors located on neurons. Caffeine, the antagonist, blocks the receptor, while adenosine, the agonist, produces the biological response upon binding.
pdb101.rcsb.org
PDB101: Learn: Videos: Caffeine and Adenosine: Antagonist and Agonist
This short video uses the example of adenosine and caffeine to introduce two key concepts in pharmacology: the agonist and the antagonist. Both, adenosine, and caffeine molecules bind to adenosine receptors on the neurons. Caffeine, the antagonist, blocks the receptor, while adenosine, the agonist, produces the biological response upon binding.
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David Shiffman, Ph.D. 🦈 @whysharksmatter.bsky.social · 24/09/2026
Have you ever tried to read a scientific journal article and been told “you don’t have access, pay to download this article?” Did you know that the author of that article gets $0 if you pay? Instead, you can email the author and ask for a free copy! I’d be delighted to help and answer questions!
Screenshot of a scientific journal paywall
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Otago Biochemistry @otagobiochemist.bsky.social · 24/09/2026
Journal Club Fri 25 Sep, 12pm, Rm BIG13 Janaki Ghatane: Looking Back: Could Childhood Cancer Risk Be Found in Newborn Dried Blood Spots. doi.org/10.1038/s414... Erin Delargy: Deep-sea megafauna co-opts microbial energy metabolism genes to withstand ultra-long starvation. 10.0.3.248/j.cell.2026....
doi.org
Population-based genomic detection of childhood cancer predisposition using newborn dried blood spots - Nature Communications
Prospective genomic newborn screening in large populations with extended follow-ups are necessary to assess the impact of the inclusion of cancer genes on outcomes. Here, the authors show that newborn...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 22/09/2026
How X-rays and crystals revealed the true nature of things The story behind the 100-year-old discovery that continues to render Nobel Prizes.
nobelprize.org
How X-rays and crystals revealed the true nature of things - NobelPrize.org
The story behind the 100-year-old discovery that continues to render Nobel Prizes.
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Otago Biochemistry @otagobiochemist.bsky.social · 22/09/2026
Latest publication with a contribution from Otago Biochemistry. Affinity selection mass spectrometry screening discovers new COP1 peptide binders pubs.rsc.org/cb/article/d...
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Otago Biochemistry @otagobiochemist.bsky.social · 22/09/2026
Latest publication with a contribution from Otago Biochemistry. Could chimeric antigen receptor-T cell treatment of atherosclerosis in mice translate to a human therapy? atm.amegroups.org/article/view...
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Otago Biochemistry @otagobiochemist.bsky.social · 22/09/2026
Latest publication with a contribution from Otago Biochemistry. An expanded realm of anti-CRISPR-associated proteins and regulatory mechanisms academic.oup.com/nar/article/...
academic.oup.com
An expanded realm of anti-CRISPR-associated proteins and regulatory mechanisms
Abstract. Many bacteriophages encode anti-CRISPR (Acr) proteins that inhibit bacterial CRISPR–Cas immune systems. Rapid acr gene expression upon phage entr
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Otago Biochemistry @otagobiochemist.bsky.social · 21/09/2026
Department of Biochemistry Special Seminar Thurs 24 Sep, 12pm, Rm BIG13 Professor Peter Lindbald, Department of Chemistry, Uppsala University, Sweden Engineering cyanobacteria for direct solar chemical and fuel production from CO2, example butanol
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Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Otago Biochemistry @otagobiochemist.bsky.social · 21/09/2026
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Otago Biochemistry @otagobiochemist.bsky.social · 16/09/2026
Journal Club Fri 12pm, Rm BIG13 Sakshi Mathur: Zhao, J., Ye, J., Zhang, M. et al. Lonely minds, inflamed guts: metabolic and circulating protein pathways linking social isolation and loneliness to inflammatory bowel disease. Transl Psychiatry 16, 365 (2026) www.nature.com/articles/s41...
nature.com
Lonely minds, inflamed guts: metabolic and circulating protein pathways linking social isolation and loneliness to inflammatory bowel disease - Translational Psychiatry
Translational Psychiatry - Lonely minds, inflamed guts: metabolic and circulating protein pathways linking social isolation and loneliness to inflammatory bowel disease
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Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Otago Biochemistry @otagobiochemist.bsky.social · 11/09/2026
Department of Biochemistry Special Seminar Wed 16 Sep, Rm BIG13 Grace Young, PhD Candidate, Department of Biochemistry Uncovering a novel regulator of triple negative breast cancer cell behaviour
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Otago Biochemistry @otagobiochemist.bsky.social · 11/09/2026
Department of Biochemistry Seminar Tues 15 Sep, Rm BIG13 Dr Rebecca Finch, Department of Zoology, University of Otago Advancing Wildlife Conservation via Disease Ecology
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Janet Iwasa @jiwasa.bsky.social · 09/09/2026
Interested in molecular animation? Give ProteinBlender a try! It's free and open source. animation-lab.github.io/ProteinBlend... The latest tools include a DNA builder (shown in the tutorial video below). We'd love to hear what you think! We have short tutorials that cover all the features!
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Otago Biochemistry @otagobiochemist.bsky.social · 09/09/2026
Journal Club Friday 12pm, Rm BIG13 Hamish Salvesen: What is life, if it’s not potatoes? A synthetic cell capable of growth and division. www.biorxiv.org/content/10.6...
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Otago Biochemistry @otagobiochemist.bsky.social · 09/09/2026
Congratulations to Nihar Naik of the Rare Disorder Genetics Lab (Bicknell Group) for submitting his PhD!🎉
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Nic Rawlence @nicrawlencenz.bsky.social · 08/09/2026
RNZ has released Part 2 of their investigation into @itiscolossal.bsky.social plan to de-extinct moa. This week, the focus is whether it should be done, incl. widespread Indigenous concerns. Both episodes can be found here (www.rnz.co.nz/podcast/ourc...) or tune in at 7.30pm tonight 1/2
rnz.co.nz
Our Changing World podcast
Stories of NZ science and nature from out in the field and inside the labs.
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Nic Rawlence @nicrawlencenz.bsky.social · 08/09/2026
The Centre for Biodiv Analysis @ANU is hosting a free 3-day workshop (10-12th Nov) on historical gene expression & epigenetic analysis of ancient & museum specimens. I'm giving a keynote talk & it would be great to see you there cba.anu.edu.au/news-events/... @erinhahn.bsky.social
cba.anu.edu.au
Historical gene expression and epigenetic analysis of ancient and museum specimens
Join keynote speakers Nic Rawlence, University of Otago and Emilio Mármol Sánchez, University of Copenhagen for an exploratory workshop for researchers interested in generating and utilising historica...
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Grant Jacobs BioinfoTools/NotJustDNA 🔬🧬🖥️✍️📚🇳🇿 @notjustdna.bsky.social · 08/09/2026
Just lifting this up for 🧬🖥️ #bioinformatics people There was a time when many DNA (and protein) sequences were often only available in print, e.g. as figures in research papers. People would sequence something and publish it as a table. I caught the tail end of that era.
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Otago Biochemistry @otagobiochemist.bsky.social · 08/09/2026
Read about PhD student Tyla Hill-Moana's haerenga (journey), making connections with the people of Rapa Nui. Ka mau te wehi, Tyla! www.otago.ac.nz/news/newsroo...
otago.ac.nz
Biochemistry PhD student returns from transformative journey to Rapa Nui
Tyla Hill-Moana, a PhD student from Te Tari Matū Koiora - the Department of Biochemistry, recently had a trip of a lifetime visiting one of the most geographically isolated inhabited places on Earth, ...
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Paul Gardner @ppgardne.bsky.social · 08/09/2026
I'm happy to say I have managed to report all 12 faked systematic reviews that we discovered on PubPeer. The corresponding URLs are in the ALT text. I'm awaiting responses from most of the publishers/authors -- other than one author admission:
1. https://pubpeer.com/publications/E858A6B3492DB679121B1358E1CDEA#null
2. https://pubpeer.com/publications/E223A9D5CF9F48D2BA6E31A5B7B163
3. https://pubpeer.com/publications/5EA00303B5EDCCDAF82304D93F0A1C
4. https://pubpeer.com/publications/339F22D24DEBFB96025FC31675A9F4
5. https://pubpeer.com/publications/650876481D7FC858E2F95148AB264C#null
6. https://pubpeer.com/publications/BE8365B6373075786A0DE05323125A#null
7. https://pubpeer.com/publications/ABE3AB3258181CD400EDFC900E3851
8. https://pubpeer.com/publications/A87CFEBAA1950F2D96195B8B8088B8
9. https://pubpeer.com/publications/233E9B0E67EAB1C92CD3904F5587C2#null
10. https://pubpeer.com/publications/365A43971AC6C7292696BA05F2300D
11. https://pubpeer.com/publications/A8F0DC88104363F2E9334CE67A03EA
12. https://pubpeer.com/publications/FFC531637B4932529E46082BC0004E
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Paul Gardner @ppgardne.bsky.social · 07/09/2026
I'm experimenting with a co-author basic network analysis to explore dubious quality publication. Last year we reported a (now retracted) review by Abdur Rauf, then we found faked systematic reviews by Talha Bin Emran. Now checking the other high degree authors in the network...
A co-authorship network of authors linked to low-quality & faked reviews. Author name is followed by the degree of the network node.
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Otago Biochemistry @otagobiochemist.bsky.social · 06/09/2026
Department of Biochemistry Seminar TOMORROW Tues 8 Sep, 12pm, Rm BIG13 Dr Tianyu Zhang, Guangzhou Institutes of Biomedicine and Health Advances in the Development of TPD-Based Drug Candidates Directly Targeting InhA in Mycobacterium tuberculosis
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Lorne Proteins @lorneproteins.bsky.social · 04/09/2026
Abstract submissions are now open for Lorne Proteins 2027! Applications for eligible awards 🏆 and bursaries 💸 are via the same portal: ➡️ www.lorneproteins.org/submissions Register today to join researchers from all over the world, converging on a small seaside town in Victoria, Australia!
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Nature Portfolio @natureportfolio.nature.com · 03/09/2026
🎬 Researchers: Can you explain your research to the world in just one minute? The Nature Awards #ScienceInShorts with Merck is back. Our top 10 selected entries will receive €5,000. Learn more about how to enter and what makes a good video: go.nature.com/4gKT1aG #SciComm #Academicsky
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Flora Graham @floragraham.bsky.social · 03/09/2026
Have you lived till you’ve watched Nobel prizewinners dressed as mushrooms perform an opera about fungi? NO
Fungi opera performed in Zurich
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Nic Rawlence @nicrawlencenz.bsky.social · 03/09/2026
Congrats to @paulinabarry.bsky.social on the publication of the first #openaccess paper from her MSc in Sci Comm (www.tandfonline.com/doi/full/10....), detailing the journey of the fantastic Legendary Birds mural she did @zoologyotago.bsky.social. Thanks for inviting me to be a part of this mahi.
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KnitMeAThneed @thneed.bsky.social · 03/09/2026
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Otago Biochemistry @otagobiochemist.bsky.social · 03/09/2026
Research from the Rare Genetic Disorders Lab has given people around the world an answer to the source of their family member’s rare genetic neurological condition; published in the prestigious journal The American Journal of Human Genetics www.otago.ac.nz/news/newsroo...
otago.ac.nz
New disease gene discovery provides answers to families
University of Otago – Ōtākou Whakaihu Waka researchers have helped identify the cause of a previously unrecognised neurodevelopmental disorder.
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Otago Biochemistry @otagobiochemist.bsky.social · 03/09/2026
Here's the Otago Biochemistry Rare Disorder Genetics Lab at the recent Human Genetics Society of Australasia annual scientific meeting in Ōtautahi Christchurch. Lab head Professor Louise Bicknell gave the prestigious Sutherland Lecture in recognition of her outstanding contribution to human genetics
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Annika Barber @annikabarber.bsky.social · 02/09/2026
Drosophila people - I *really* need to know the story behind the naming of the Turandot genes. I have backtracked to the 2001 papers from the Hultmark lab and there's no explanation! @hansonmark.bsky.social do you know?? Any other fly stress response peeps? Opera fans? 🪰
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Otago Biochemistry @otagobiochemist.bsky.social · 02/09/2026
Always a pleasure to hear the 400-level students talk about their research journeys 😊 Otago Biochemistry marks 50 years of student research presentations www.otago.ac.nz/news/newsroo...
otago.ac.nz
Otago Biochemistry marks 50 years of student research presentations
The University of Otago's Department of Biochemistry celebrated a significant milestone last week, hosting the 50th annual Meeting of the Biochemistry Department Research Society. A longstanding tradi...
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Otago Biochemistry @otagobiochemist.bsky.social · 02/09/2026
Latest publication from Otago Biochemistry. Designing a multi-epitope vaccine against dengue virus-2 using in silico tools for expression in plant systems bi.tbzmed.ac.ir/Article/bi-3...
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Otago Biochemistry @otagobiochemist.bsky.social · 02/09/2026
Latest publication from Otago Biochemistry. Black Sheep: Pseudokinases Bucking the Trend to Reveal Non-Catalytic Kinase Functions iubmb.onlinelibrary.wiley.com/doi/10.1002/...
iubmb.onlinelibrary.wiley.com
Black Sheep: Pseudokinases Bucking the Trend to Reveal Non‐Catalytic Kinase Functions
Pseudokinases are the catalytically-dead counterparts of protein kinases and, over the past 20 years, have increasingly garnered attention as crucial signaling entities—comprehensively dispelling the...
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Otago Biochemistry @otagobiochemist.bsky.social · 02/09/2026
Latest publication from Otago Biochemistry. Genomic indicators of gene function: a systematic assessment of the human genome academic.oup.com/g3journal/ad...
academic.oup.com
Genomic indicators of gene function: a systematic assessment of the human genome
Abstract. Proteins and non-coding RNAs are functional products of the genome that are central for crucial cellular processes. With recent technological adv
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Verena Resch | 🧪🖥️ @verenaresch.bsky.social · 01/09/2026
Sadly, Ada Yonath passed away. Her work on the ribosome was extraordinary. I was fortunate to hear her speak at Lindau in 2013, and her curiosity and courage stayed with me ever since. I rendered this ribosome in her honor, a tiny tribute to a remarkable scientist. #ribosome #sciart
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Nicola Gaston @nicgaston.bsky.social · 31/08/2026
In commemoration of 100 yrs of publicly-funded science in AoNZ: 1. The role of fundamental science (& who in fact does it): newsroom.co.nz/2026/07/30/l... 2. Why politicians need to back up out of picking winners: newsroom.co.nz/2026/07/31/g... 3. My 1st response to the killing of the Marsden Fund:
newsroom.co.nz
Luxon wants to ‘brutally commercialise’ science, but cuts threaten its foundation
Comment from Auckland University: Decades of research funding cannot be replaced by funding the commercialisation of that science
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 31/08/2026
Structural biologists study the mechanisms that underpin damage to and repair of the genome, the way that these genetic changes lead to cancer, and ways for us to use this knowledge to discover and develop new treatments to fight cancer. More at PDB-101:
pdb101.rcsb.org
PDB101: Learn: Exploring the Structural Biology of Cancer
Cells capture and utilize many forms of energy to power their molecular processe
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Otago Biochemistry @otagobiochemist.bsky.social · 31/08/2026
Oh wow, they all look so grown up! www.otago.ac.nz/news/newsroo...
otago.ac.nz
Otago Biochemistry graduations August 2026
Congratulations to all who graduated from the Department of Biochemistry in August. Tino pai rawa atu!
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Otago Biochemistry @otagobiochemist.bsky.social · 31/08/2026
We really enjoyed the Faculty of BMS postgrad Research Symposium last week. Always great to make new connections! Congrats to Biochem award winners Jordan Cohen-Ronen (outstanding poster) and Pragya Bradu (2nd, 3-min talks) and also the organisers, including Chantelle Monteith & Rosie Morris
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Lorne Proteins @lorneproteins.bsky.social · 25/08/2026
Every year, one T-shirt design becomes part of the conference story-worn, remembered & woven into the fabric of the conference. If yours is chosen, you'll see it come to life on delegates from across the globe as they gather in Lorne. www.lorneproteins.org/t-shirt-desi... #LorneProteins2027
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Otago Biochemistry @otagobiochemist.bsky.social · 27/08/2026
Congratulations to Dr Shilpa Saseendran Nair on her pageant success! She was recently crowned the winner of this year’s Glammon Mrs India Worldwide pageant. Shilpa is a former Otago Biochemistry researcher who is now a postdoc in the Department of Microbiology. newspapers.odt.co.nz/article/6772...
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Otago Biochemistry @otagobiochemist.bsky.social · 27/08/2026
Vote for your favourite MOLECULE ART at the Australian Research Council Centre for Cryo-Electron Microscopy of Membrane Proteins (CCeMMP) Bench to Art competition - closes Aug31 sites.google.com/monash.edu/b... @ccemmp-outreach.bsky.social
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Peter Dearden @peterkdearden.bsky.social · 20/08/2026
Why flies wings tell us how to make a nervous system peterkdearden.substack.com/p/on-making-...
peterkdearden.substack.com
on making a nervous system
and treasuring your exceptions
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