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Lakshita Sharma

@lakshitaaa.bsky.social
193 followers 288 following 9 posts

Learning from the mistakes of others who took my advice 🤐 | Exploring Proteostasis with Mass Spectrometry 🧑‍💻🥼 | Science & curiosity in constant motion 🛣️| 📍 Germany

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Reposted by Lakshita Sharma
Nature Cell Biology @natcellbio.nature.com · 28/08/2026
☕Gao et al. show that yeast grow faster by proportionally increasing mRNA and ribosome concentrations to increase actively translating ribosomes, while elongation remains constant. A mass-action model explains growth-rate changes. 👉https://rdcu.be/fCD18 www.nature.com/articles/s41...
nature.com
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth - Nature Cell Biology
Gao et al. show that yeast grow faster by proportionally increasing mRNA and ribosome concentrations to increase actively translating ribosomes, while elongation remains constant. A mass-action model ...
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Reposted by Lakshita Sharma
Ishier Raote @ishier.bsky.social · 06/07/2026
Exciting preprint from @hessofarhan.bsky.social! Mechanical stress has a new sensor! IRE1 detects ER membrane tension and drives protein synthesis independently of its canonical UPR role, reshaping cell and organelle mechanobiology. www.researchsquare.com/article/rs-1...
researchsquare.com
Mechanosensing at the endoplasmic reticulum by IRE1
Sensing and integration of mechanical forces in eukaryotic cells have largely been attributed to the plasma membrane and the nucleus. Here, we identify the endoplasmic reticulum (ER) as an autonomous ...
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warscheidlab.bsky.social @warscheidlab.bsky.social · 24/06/2026
Read the full review by @lakshitaaa.bsky.social, Sristi Chakroborty, @hirakdas.bsky.social , and the Bettina Warscheid Lab: 🔗 doi.org/10.1002/pro.... #Proteomics #MassSpec #Mitochondria #SciSky #Biology
doi.org
Mass spectrometry proteomics for studying mitostasis
Maintaining mitochondrial integrity and function is fundamental to cellular homeostasis. Cells rely on coordinated protein quality control (QC) systems—including intricate chaperone-protease networks...
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Reposted by Lakshita Sharma
PastelBio @pastelbio.bsky.social · 16/06/2026
Mass spectrometry proteomics for studying mitostasis onlinelibrary.wiley.... --- #proteomics #prot-paper
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Reposted by Lakshita Sharma
Eric Chevet @ericchevet.bsky.social · 10/05/2026
Good morning! This week's selection of articles and #preprints on #proteostasis thanks to @biomednews.bsky.social -- biomed.news/bims-proteo/... Highlight: Impaired collagen deposition in the absence of ERp44 www.cell.com/iscience/ful...
biomed.news
bims-proteo 2026-05-10 papers
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Reposted by Lakshita Sharma
Todd Douglas @apoptoddic.bsky.social · 30/04/2026
Our paper is now out in @natcellbio.nature.com! @craigmcrews.bsky.social www.nature.com/articles/s41... We identify a new regulator of the quality control system that protects one of nature's most important molecular machines: the ribosome. QC failure → unmitigated metabolic stress & cell death.
nature.com
The atypical E3 ligase HOIL-1 safeguards the ribosome during cellular stress - Nature Cell Biology
Douglas et al. study the E3 ligase HOIL-1, mutated in patients with a type of myopathy. Mutant HOIL-1 influences the sensitivity to disulfidptosis initiated by ZAKα–ATF4 in glucose starvation and inte...
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Ed Huttlin @edhuttlin.bsky.social · 23/03/2026
To better understand the ubiquitin-proteasome system, Suzanne Elsasser, Dan Finley, and the Human Proteostasis Consortium have systematically surveyed its components: www.biorxiv.org/content/10.6... I would encourage you to check out this valuable resource! @harvardcellbio.bsky.social
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Reposted by Lakshita Sharma
Nature Structural & Molecular Biology @natsmb.nature.com · 27/02/2026
New online: Stress adaptation of mitochondrial protein import by OMA1-mediated degradation of DNAJC15
dlvr.it
Stress adaptation of mitochondrial protein import by OMA1-mediated degradation of DNAJC15
Nature Structural & Molecular Biology, Published online: 27 February 2026; doi:10.1038/s41594-026-01756-0Kroczek et al show that degradation of DNAJC15 by OMA1 and AFG3L2 under stress limits mitochondrial protein import and OXPHOS biogenesis. Non-imported proteins lead to the induction of the unfolded protein responses from the endoplasmic reticulum.
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Reposted by Lakshita Sharma
Nature Cell Biology @natcellbio.nature.com · 13/02/2026
☕Donahue et al. show that #aging is associated with changes in ER morphology. ER-phagy drives age-associated ER remodeling through tissue-specific factors. #autophagy #longevity bit.ly/40dNHEE
bit.ly
ER remodelling is a feature of ageing and depends on ER-phagy - Nature Cell Biology
Donahue et al. show that ageing is associated with changes in ER morphology. ER-phagy drives age-associated ER remodelling through tissue-specific factors.
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Reposted by Lakshita Sharma
BioMassSpec @realbiomassspec.bsky.social · 06/02/2026
Mass spectrometry-based human spatial omics: fundamentals, innovations, and applications #JBiomedSci link.springer.com/article/10.1...
link.springer.com
Mass spectrometry-based human spatial omics: fundamentals, innovations, and applications - Journal of Biomedical Science
Mass spectrometry-based spatial omics is a powerful approach for visualizing the spatial organization of proteins, metabolites, lipids, and other biomolecules in situ, combining the molecular depth of...
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Reposted by Lakshita Sharma
Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 07/02/2026
A near-complete map of human cytosolic degrons and their relevance for disease We measured degron potency of >200,000 30-residue tiles from >5,000 human proteins, and trained a model to predict degrons from sequence Led by @vvouts.bsky.social in @rhp-lab.bsky.social doi.org/10.1126/scia...
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David Vilchez @thevilchezlab.bsky.social · 05/02/2026
Our new review on proteostasis of organelles in aging & disease is now online in The FEBS Journal! We discuss recent insights on how #proteostasis safeguards organelle integrity and function across the cell in #aging and disease doi.org/10.1111/febs...
doi.org
FEBS Press
Cells rely on regulated proteostasis mechanisms to keep their internal compartments functioning properly. When these mechanisms fail, damaged proteins accumulate, disrupting organelles, such as the n....
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paulschanda.bsky.social @paulschanda.bsky.social · 14/01/2026
📢 New preprint alert! How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gate—using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code. www.biorxiv.org/content/10.6... #StructuralBiology #Mitochondria 🧵 1/8
biorxiv.org
A dynamic displacement mechanism drives protein import into mitochondria
Most mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...
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Julius-Maximilians-Universität Würzburg @uni-wuerzburg.de · 23/01/2026
New Paper out in @cellpress.bsky.social: How cancer cells protect themselves from the immune system. Cancer gene #MYC camouflages tumours by suppressing alarm signals. ‪@mycgyvers.bsky.social @cancergrand.bsky.social ‬‬‬‬ 📷 Daniel Peter ➡️ www.uni-wuerzburg.de/en/news-and-...
The authors of the Cell publication (from left to right): Martin Eilers, Amel Aziba, Leonie Uhl and Sinah Löbbert.
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Reposted by Lakshita Sharma
Picotti Lab @picottilab.bsky.social · 13/01/2026
We’re delighted to report a global structural proteome analysis within living cells! doi.org/10.1038/s443... #proteomics #structuralproteomics #massspectrometry #structuralbiology #ethz @imsb-eth.bsky.social
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Jeremy Baskin @jeremybaskin.bsky.social · 07/01/2026
Thrilled to share our latest study, led by @reikatei.bsky.social, in @natchembio.nature.com! We began by asking a simple question—how do cells know if they have too much of a lipid in a particular membrane, and how do they respond to rectify this imbalance? www.nature.com/articles/s41... More info 👇
nature.com
Membrane editing with proximity labeling reveals regulators of lipid homeostasis - Nature Chemical Biology
Coupling an optogenetic lipid-modifying enzyme with proximity labeling reveals protein networks and mechanisms regulating lipid homeostasis in the membranes of target organelles.
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Vadim Demichev @vadim-demichev.bsky.social · 05/12/2025
We are delighted to release 𝐃𝐈𝐀-𝐍𝐍 𝟐.𝟑.𝟏, with a groundbreaking 𝐈𝐧𝐟𝐢𝐧𝐃𝐈𝐀 module for fast searches against huge databases and support for 𝐃𝐃𝐀 data. Release notes: github.com/vdemichev/Di...
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c0nc0rdance @c0nc0rdance.bsky.social · 15/10/2025
University administration: "We need you to complete 26 hours of lab safety training 🧪 each year so that everyone is safe and responsible." Also university administration:
Stolen from the Internet, a sign that says "If Elevator does not move do a small jump it should move after", and a dirty-white freight elevator wall and aged elevator controls with only floors 1 and 2."

I have no idea where this really is, I just stole it off Wikimedia.
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Liam Faller @liamfaller.bsky.social · 28/08/2025
Very cool stuff on the co-translational folding of dimers by Sander Tans and his team @amolf-nl.bsky.social: www.nature.com/articles/s41...
nature.com
Co-translational ribosome pairing enables native assembly of misfolding-prone subunits - Nature Communications
Protein complexes are essential for cell function. Here, authors show that paired ribosomes can help each other’s nascent chains fold correctly, enabling proper dimer assembly and preventing misfoldin...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 11/09/2025
We recently carried out the first single-molecule analysis of protein folding & unfolding in a cytosolic environment using optical tweezers—moving beyond simplistic buffer conditions to study proteins where they actually function. advanced.onlinelibrary.wiley.com/doi/10.1002/... #ChemSky #Biophysics
advanced.onlinelibrary.wiley.com
Cytosolic Interactome Protects Against Protein Unfolding in a Single Molecule Experiment
Single molecule experiments aimed at probing protein folding are typically performed in buffer conditions and cannot therefore be representative of the multi-faceted and complex cooperative interacti...
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Reposted by Lakshita Sharma
Mathieu M.J.E. Rebeaud @chercheurjuteux.com · 12/08/2025
ATP plays a structural role in Hsp90 function www.nature.com/articles/s41...
nature.com
ATP plays a structural role in Hsp90 function - Nature Communications
The exact role of ATP in the function of Hsp90, an essential molecular chaperone, is unclear since ATP binding but not hydrolysis is essential for viability. Here, the authors propose that ATP plays a...
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Walter W. Chen, MD, PhD @walterwchen.bsky.social · 30/07/2025
Our work on new paradigm in peroxisome biogenesis and PEX39 (1st human peroxisomal biogenesis protein (peroxin/PEX) found in > 20 yr) is out in @natcellbio.nature.com! Equal collab w/Tony Rodrigues (Jorge Azevedo lab), @dwendscheck.bsky.social (Bettina Warscheid lab) www.nature.com/articles/s41...
nature.com
PEX39 facilitates the peroxisomal import of PTS2-containing proteins - Nature Cell Biology
Chen et al. show that PEX39 cooperates with PEX7 in the peroxisomal import of proteins containing a PTS2 site and uncover an (R/K)PWE motif in PEX39 and PEX13 that binds to PEX7 and facilitates the im...
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Anupam Patgiri @apatgiri.bsky.social · 24/05/2025
Silencing mitochondrial gene expression in living cells www.science.org/doi/10.1126/...
science.org
Silencing mitochondrial gene expression in living cells
Mitochondria fulfill central functions in metabolism and energy supply. They express their own genome, which encodes key subunits of the oxidative phosphorylation system. However, central mechanisms u...
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Reposted by Lakshita Sharma
Journal of Cell Science @jcellsci.bsky.social · 12/05/2025
Kailash Venkatraman, Nicolas-Frédéric Lipp & @ibudin.bsky.social examine the similarities between prokaryotic intracytoplasmic membranes & mitochondrial IMs, & discuss whether cristae evolution has driven specialisation of the #mito lipidome. journals.biologists.com/jcs/article/... #JCSMitoSI
Bacterial ICMs exhibit internal invaginations that resemble eukaryotic cristae. (A)TEM images showing tubular cristae-like ICM compartments in free-living Desulfobacterota, and similar cristae-like ICM tubules in Desulfovibrio carbinolicus strains. The eukaryotic model organism S. cerevisiae exhibits tubular cristae structures, whereas the commonly used HEK293 cell line exhibits predominantly lamellar cristae structures. Scale bars: 500 nm.  (B) Eukaryotic mitochondria tend to exhibit lamellar, tubular or discoidal cristae morphology, whereas orders of the class alphaproteobacteria exhibit a range of ICM morphologies. Lamellar-like ICMs, which exhibit parallel cytoplasmic protrusions that do not contact the inner membrane, are commonly observed in nitrogen-fixing and several methanotrophic alphaproteobacteria.  (C)  This simplified and non-exhaustive cladogram indicates the two domains of life – bacteria and archaea – with proto-mitochondria emerging in early alphaproteobacteria. Eukaryogenesis is marked by the horizontal transfer (red dotted arrow) from Bacteria to Hordarchaeales in Asgard archaea. §, †, #, * and ‡ connect species listed in B to their respective clades in C.
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Pawel Wydorski @pwydorski.bsky.social · 11/05/2025
"Scouring the human Hsp70 network uncovers diverse chaperone safeguards buffering TDP-43 toxicity" www.biorxiv.org/content/10.1...
biorxiv.org
Scouring the human Hsp70 network uncovers diverse chaperone safeguards buffering TDP-43 toxicity
Cytoplasmic aggregation and concomitant dysfunction of the prion-like, RNA-binding protein TDP-43 underpin several fatal neurodegenerative diseases, including amyotrophic lateral sclerosis. To elucida...
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Reposted by Lakshita Sharma
Hirak Das @hirakdas.bsky.social · 28/04/2025
Happy to share our recent publication where we present the most up to date membrane protein inventory of #Glycosomes and identified the long sought trypanosomal PEX15. Thanks to everyone involved for this amazing collaborative effort to combine #proteomics with #functional #analysis.
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Christian Frezza @frezzalab.bsky.social · 18/04/2025
Mitochondria-organelle crosstalk in establishing compartmentalized metabolic homeostasis: Molecular Cell www.cell.com/molecular-ce...
cell.com
Mitochondria-organelle crosstalk in establishing compartmentalized metabolic homeostasis
Mitochondria are metabolic hubs that communicate with other organelles via metabolite-, lipid-, and signaling-molecule exchange facilitated by membrane contact sites (MCSs). MCSs, regulated by tetheri...
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David Pla Martin @dplamartin.bsky.social · 04/04/2025
Excited to share our latest paper in Science Advances! We finally dissected a new pathway for mitochondrial quality control upon mtDNA replication stress! Let’s start a short thread! 🧵 www.science.org/doi/10.1126/...
science.org
Retromer promotes the lysosomal turnover of mtDNA
Lysosomal uptake of mtDNA controls mitochondrial quality.
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Nikolai Slavov @slavov-n.bsky.social · 04/04/2025
Timescales in Cell Biology
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Korolchuk Lab @korolchuklab.bsky.social · 27/03/2025
www.cell.com/trends/cell-...
cell.com
The fate of mitochondrial respiratory complexes in aging
While mitochondrial dysfunction is one of the canonical hallmarks of aging, it remains only vaguely defined. Its core feature embraces defects in energy-producing molecular machinery, the mitochondria...
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Lakshita Sharma @lakshitaaa.bsky.social · 26/03/2025
"When life gives you a 3D printer, you print a duck… that actually floats! Lab innovation at its finest. #ScienceMeetsQuack @warscheidlab.bsky.social
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Oded Rechavi @odedrechavi.bsky.social · 11/03/2025
My face on zoom when i pretend to listen but work on something else
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Nature Cell Biology @natcellbio.nature.com · 04/03/2025
☕️Interested in how cells respond to #mitochondria #ProteinImport stress? Read our Review article by Nikolaus Pfanner, Fabian den Brave & Thomas Becker. 👉🏽https://rdcu.be/ecb3x bit.ly/3DgVkm5
bit.ly
Mitochondrial protein import stress - Nature Cell Biology
Cells respond to mitochondrial protein import stress by regenerating clogged import sites and inducing stress responses. Mitochondria are thus tightly integrated into the cellular proteostasis and str...
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Clausen Lab @clausenlab.bsky.social · 04/03/2025
DUBs - unsung yet exciting players in the UPS: kay hofmann et al reveal bacterial DUBs with irreversible clippase activity, reshaping our view on ubiquitin dynamics ... and providing a tool to distinguish Ub and ISG15 signals in immune signalling. chapeau! www.sciencedirect.com/science/arti...
sciencedirect.com
A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode
Many intracellular bacteria secrete deubiquitinase (DUB) effectors into eukaryotic host cells to keep the bacterial surface or the enclosing vesicle m…
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Jonathan Friedman @labfriedman.bsky.social · 19/02/2025
Some good news (and fresh science) to break things up! Our work identifying a subpopulation of compositionally unique mitochondria that localize to filopodia and promote cell migration is now @currentbiology.bsky.social! Led by fantastic @madeleinempavey.bsky.social! www.cell.com/current-biol...
cell.com
Compositionally unique mitochondria in filopodia support cellular migration
Marlar-Pavey et al. determine that a subpopulation of compositionally unique mitochondria, METEORs, dynamically localize to filopodia. Loss of mitochondrial targeting to filopodia correlates with a re...
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Lakshita Sharma @lakshitaaa.bsky.social · 14/02/2025
Had an absolute blast this week! ✨🚀 The excitement is off the charts as we gear up to dive into new frontiers with the Astral mass spectrometer. Ready to unlock new dimensions of identification and discovery—stay tuned for the magic that’s about to unfold! 🤓🔬🔍 #MassSpecMagic #AstralVibes"
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Lakshita Sharma @lakshitaaa.bsky.social · 16/01/2025
🤯🤯
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Thibault Mayor @cellsandprots.bsky.social · 10/01/2025
Protein quality control is a tug-of-war between degradation machinery and chaperones that promote folding. Thrilled to see our latest manuscript is now published! 👇 Follow 🧵 for quick summary journals.biologists.com/jcs/article-...
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Kusterlab @kusterlab.bsky.social · 10/01/2025
🎉 We're happy to announce that our latest project was published in @naturecomms.bsky.social this week: PTMNavigator, a #bioinformatics web platform for in-depth analysis of post-translational modification (PTM) perturbation datasets. 📄 doi.org/10.1038/s414... (1/6)
doi.org
PTMNavigator: interactive visualization of differentially regulated post-translational modifications in cellular signaling pathways - Nature Communications
Post-translational modifications are important regulators of cellular pathways, but our understanding of these processes is limited. Here, the authors present a web tool that integrates various databa...
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Khalimonchuk Lab @mitocrue.bsky.social · 07/01/2025
www.nature.com/articles/s41...
nature.com
Mitochondrial YME1L1 governs unoccupied protein translocase channels - Nature Cell Biology
Hsu et al. show that mitochondrial import blockage stress activates the ATP-dependent protease YME1L1, which degrades mitochondrial presequence translocase TIM23 subunits to promote cell growth.
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Daniel Wendscheck @dwendscheck.bsky.social · 22/12/2024
Post-Doc Position WANTED⚡️ I'll finish my PhD work within the next few month and started to sort out where to continue doing exciting science. Any recommendations & suggestions are welcome🙏 More information on my scientific background and ideas for the future below 🧵 reskeet very much appreciated!
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Johannes Zimmermann @johannes-uni-wue.bsky.social · 20/12/2024
Who is messing with your favorite protein Filamin C in stressed muscle cells? 🧩🔬 We tackled this riddle in our latest paper in Scientific Reports. A huge shoutout to former lab mate Anja and Thomas from the @mkoehn.bsky.social lab - this was a true team effort! 👏🎉! A short thread: 🧵(1/5)
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Lakshita Sharma @lakshitaaa.bsky.social · 17/12/2024
For all the #ubiquitin enthusiasts, please check out the post below 😉. Amazing line up of speakers and great wine 🍷 to look forward to 😁. #proteostasis #qualitycontrol
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Happy Jack @happycraycray.bsky.social · 15/12/2024
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Rita Strack @ritastrack.bsky.social · 06/12/2024
I could not be more thrilled to announce the Nature Methods @naturemethods.bsky.social Method of the Year is Spatial Proteomics! Please see our editorial as a roadmap to the fantastic content in this special issue! www.nature.com/articles/s41...
nature.com
Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
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STCmicrobeblog @stcmicrobeblog.bsky.social · 05/12/2024
@osman-lab.bsky.social < is that you > @osman_lab on 𝕏 ? @felix_thoma on 𝕏 Apr 25, 2022 "Mitochondrial dynamics in budding yeast. A picture was taken every 3 min for 5 h. I used mKate2 targeted to the mitos, and imaged the cells in a microfluidic chamber with a Nikon Ti2e Eclipse" need this here!
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Lakshita Sharma @lakshitaaa.bsky.social · 06/12/2024
Who needs Christmas lights🎄🚦 when you have an Astral🐅 #massspec #Astal
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MRC Laboratory of Molecular Biology @mrclmb.ac.uk · 29/11/2024
Huping Wang and Manu Hegde, in @cellbiol-mrclmb.bsky.social have found a factor that accelerates protein deliveries to the endoplasmic reticulum Click here to read more about it: www2.mrc-lmb.cam.ac.uk/discovery-of... #LMBResearch
Model depicting the early steps during production of a membrane protein
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Micha Rapé Lab @micharapelab.bsky.social · 26/11/2024
Excited to report our discovery of an important component of the oxidative stress response: the E3 ligase TRIP12. It acts as a chain elongation factor that amplifies CUL3-KEAP1 activity to drive NRF2 degradation as cells recover from stress. www.biorxiv.org/content/10.1...
biorxiv.org
Dynamic regulation of the oxidative stress response by the E3 ligase TRIP12
The oxidative stress response is centered on the transcription factor NRF2 and protects cells from reactive oxygen species (ROS). While ROS inhibit the E3 ligase CUL3-KEAP1 to stabilize NRF2 and elici...
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Oded Rechavi @odedrechavi.bsky.social · 24/11/2024
It's my turn to use the FACS
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