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Anupam Patgiri

@apatgiri.bsky.social
1.9K followers 1.8K following 286 posts

Assistant Professor @EmoryMedicine passionate about #mitochondria #metabolism and #chemicalbiology | Amateur Photographer | Lab website: patgirilab.org | 🇮🇳🇺🇸

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Anupam Patgiri @apatgiri.bsky.social · 25/09/2026
Rare science, real impact: shaping the future of research on rare metabolic diseases www.nature.com/articles/s42...
nature.com
Rare science, real impact: shaping the future of research on rare metabolic diseases - Nature Metabolism
Rare diseases affect millions of people worldwide, yet they remain understudied. Six experts on rare metabolic diseases reflect on the state of the field and share their perspectives on the opportunit...
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Anupam Patgiri @apatgiri.bsky.social · 23/09/2026
Loss of TCA cycle turning promotes stem cell function www.biorxiv.org/content/10.6...
biorxiv.org
Loss of TCA cycle turning promotes stem cell function
The citric acid cycle (TCA cycle) is the common terminal pathway for the oxidation of all nutrients. Citrate oxidation to oxaloacetate produces CO2, and citrate synthase (CS) uses nutrient-derived ace...
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Reposted by Anupam Patgiri
Catalina Vasilescu, PhD @cvasilescu.bsky.social · 20/09/2026
Celebrating Mitochondrial Disease Awareness Week with a new format for our @biomednews.bsky.social selection of papers on #Mitochondria in #Health and #Disease! 💚 biomed.news/bims-mitdis/... @gavinmcstay.bsky.social @mitoscientist.bsky.social @mitoscientists.bsky.social @mitoworld.bsky.social
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Nature @nature.com · 16/09/2026
Asgard archaea, named for the realm of the Norse gods, changed scientists' views on the origins of eukaryotes go.nature.com/4h8rgZP
go.nature.com
These bizarre, much-coveted microbes are revealing the origins of complex life
Researchers are racing to culture a menagerie of exotic organisms and finding lots of surprises along the way.
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Catalina Vasilescu, PhD @cvasilescu.bsky.social · 13/09/2026
Happy Sunday and a new edition of #Mitochondria in #Health & #Disease! biomed.news/bims-mitdis/... 💚 Highlights 👇 4D spatiotemporal landscape of mitochondrial phenotypes [..] @biomednews.bsky.social @mitoscientist.bsky.social @gavinmcstay.bsky.social @mito-news.bsky.social @mitoworld.bsky.social
4D spatiotemporal landscape of mitochondrial phenotypes across cellular states unlocked through representation learning
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Anupam Patgiri @apatgiri.bsky.social · 09/09/2026
Pentose phosphate pathway-derived NADPH facilitates physiological hypertrophy and alleviates ischemia–reperfusion injury in the heart www.nature.com/articles/s42...
nature.com
Pentose phosphate pathway-derived NADPH facilitates physiological hypertrophy and alleviates ischemia–reperfusion injury in the heart - Nature Metabolism
NADPH derived from the pentose phosphate pathway is shown to mediate exercise-induced physiological cardiac hypertrophy and protect against damage caused by ischaemia–reperfusion injury.
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Reposted by Anupam Patgiri
Ming Tommy Tang @tommytang.bsky.social · 08/09/2026
Data wrangling is an essential skill for any data scientists. Dplyr cheatsheet rstudio.github.io/cheatsheets...
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Anupam Patgiri @apatgiri.bsky.social · 31/08/2026
NAD+ precursor treatment prevents cardiomyopathy but disrupts erythroid maturation in mitochondrial progeria www.cell.com/cell-reports...
cell.com
NAD+ precursor treatment prevents cardiomyopathy but disrupts erythroid maturation in mitochondrial progeria
Khan et al. show that long-term nicotinamide riboside produces divergent tissue responses in mitochondrial progeria mice: it restores cardiac NAD+ metabolism and function, but in bone marrow causes re...
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Anupam Patgiri @apatgiri.bsky.social · 28/08/2026
RNA-dependent association of the pyruvate dehydrogenase complex with mtDNA-containing assemblies supports mitochondrial translation www.biorxiv.org/content/10.6...
biorxiv.org
RNA-dependent association of the pyruvate dehydrogenase complex with mtDNA-containing assemblies supports mitochondrial translation
Mitochondrial DNA (mtDNA) encodes core subunits of the oxidative phosphorylation machinery, and its expression is spatially organized, with the genome packaged into nucleoids around which transcriptio...
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Anupam Patgiri @apatgiri.bsky.social · 24/08/2026
Glycolytic compensation rather than NAD+/NADH balance sustains neuronal function during mitochondrial stress www.biorxiv.org/content/10.6...
biorxiv.org
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Anupam Patgiri @apatgiri.bsky.social · 24/08/2026
Patient’s own mitochondria injected into eyes in attempt to restore vision www.nature.com/articles/d41...
nature.com
Patient’s own mitochondria injected into eyes in attempt to restore vision
Injection of a person’s own mitochondria into the retina was safe but had only a temporary effect on restoring vision.
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Anupam Patgiri @apatgiri.bsky.social · 14/08/2026
Mitochondrial stress activates ELT-2–dependent lysosomal proteostasis to extend lifespan in C. elegans www.science.org/doi/10.1126/...
science.org
Mitochondrial stress activates ELT-2–dependent lysosomal proteostasis to extend lifespan in C. elegans
Mild mitochondrial stress could extend lifespan across species, yet the underlying mechanism remains unclear. Here, we show that inhibition of mitochondrial respiration induces a sustained transcripti...
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Catalina Vasilescu, PhD @cvasilescu.bsky.social · 09/08/2026
A new issue of #Mitochondria in #Health & #Disease! 📚 biomed.news/bims-mitdis/... 👉 Tau-induced mitochondrial reverse electron transport drives neurodegeneration @biomednews.bsky.social @gavinmcstay.bsky.social @mitoscientist.bsky.social @mitoscientists.bsky.social @mito-news.bsky.social
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Anupam Patgiri @apatgiri.bsky.social · 09/08/2026
Miniaturizing and modifying natural proteins with Raygun www.nature.com/articles/s41...
nature.com
Miniaturizing and modifying natural proteins with Raygun - Nature
Probabilistic sequence encoding from language model embeddings within a generative AI framework enables protein miniaturization, modification and augmentation while maintaining native architectur...
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Anupam Patgiri @apatgiri.bsky.social · 08/08/2026
A molecular switch for coordinating kinesin and dynein transport of mitochondrial cargo www.science.org/doi/10.1126/...
science.org
A molecular switch for coordinating kinesin and dynein transport of mitochondrial cargo
The cellular distribution of mitochondria in response to stress and local energy needs is governed by the relative activities of the microtubule-based molecular motors kinesin and dynein. The mechanis...
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Anupam Patgiri @apatgiri.bsky.social · 08/08/2026
Tau-induced mitochondrial reverse electron transport drives neurodegeneration www.cell.com/neuron/abstr...
cell.com
Tau-induced mitochondrial reverse electron transport drives neurodegeneration
Mitochondrial dysfunction features prominently in tauopathies. The mechanistic link between tau and mitochondria remains uncertain. Li et al. show that tau enters mitochondria and interacts with compl...
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Anupam Patgiri @apatgiri.bsky.social · 31/07/2026
Atlas of lysosomal aging reveals a metabolite signature shared with lysosomal storage disorders www.science.org/doi/10.1126/...
science.org
Atlas of lysosomal aging reveals a metabolite signature shared with lysosomal storage disorders
Lysosomal dysfunction is a well-recognized feature of aging. Here, we used a suite of tools for rapid lysosomal isolation to construct a multitissue atlas of the metabolite changes lysosomes undergo d...
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Reposted by Anupam Patgiri
Catalina Vasilescu, PhD @cvasilescu.bsky.social · 26/07/2026
A new week and a new selection of papers on #Mitochondria in #Health & #Disease! biomed.news/bims-mitdis/... Among highlights 👇 @biomednews.bsky.social @gavinmcstay.bsky.social @mitoscientist.bsky.social @mitoscientists.bsky.social @mito-news.bsky.social
Epigenetic and 3D genome reprogramming during the aging of the human hippocampus
https://www.science.org/doi/10.1126/science.adt8307
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Natalie Niemi @nieminm.bsky.social · 21/07/2026
New preprint from the lab, led by the ever-talented grad student Tessa Lochetto @tlochetto.bsky.social! We find that loss of our favorite phosphatase Pptc7 decreases lean mass, induces skeletal muscle dysfunction, and causes metabolic derangements in adult mice: doi.org/10.64898/202... /1
doi.org
Sustained loss of Pptc7 triggers variable skeletal muscle dysfunction and diminished body mass through dysregulation of BNIP3
The mitochondrial phosphatase PPTC7 is required to sustain mammalian metabolism, as its global knockout (KO) triggers hypoketotic hypoglycemia and perinatal lethality in mice. However, the extent to w...
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Chemistry World @chemistryworld.com · 21/07/2026
Scientists still don’t know exactly what makes these organisms so resilient, but they’re starting to get an idea. Read here: www.chemistryworld.com/features/ext...
chemistryworld.com
Extremophiles are rewriting the rules of life on Earth
Creatures that survive extreme conditions like mind-boggling temperatures and toxicity challenge how we define life. Bárbara Pinho finds out how it will impact how we search for life beyond Earth
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Agnel Sfeir @agnelsfeir.bsky.social · 17/07/2026
mtDNA deletions cause incurable diseases. Our CRISPR screen found a fix: deleting MTERF1 restores mitochondrial function, not by clearing bad genomes, but by making the healthy ones work harder. Simple Biology! New preprint 👇 @tatakavlashvili.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
MTERF1 loss buffers against pathogenic mtDNA deletions through transcriptional regulation
Large-scale mitochondrial DNA (mtDNA) deletions cripple oxidative phosphorylation once they exceed a critical heteroplasmy threshold, causing incurable mitochondrial pathologies. Using a genome-wide C...
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Anupam Patgiri @apatgiri.bsky.social · 13/07/2026
www.cell.com/trends/endoc...
cell.com
Nordic track: NIH dysfunction and my Helsinki recruitment
National Institutes of Health aims to prioritize groundbreaking work that challenges existing views with rigor and reproducibility, and shows potential for translation. Increasingly, however, reviewer...
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Jake Wintermute @synbio1.bsky.social · 13/07/2026
Everyone wants to cure all diseases but nobody wants to do no hard ass biology experiments
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Richard Sever @richardsever.bsky.social · 11/07/2026
FTFY
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Catalina Vasilescu, PhD @cvasilescu.bsky.social · 21/06/2026
Here it is! 😉 A new collection of papers on #Mitochondria in #Health & #Disease! 📚 biomed.news/bims-mitdis/... 👉 SLC25A3 exports mitochondrial copper to metalate cytochrome c oxidase and prevent cuproptosis @biomednews.bsky.social @gavinmcstay.bsky.social @mitoscientist.bsky.social
SLC25A3 exports mitochondrial copper to metalate cytochrome c oxidase and prevent cuproptosis
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Anupam Patgiri @apatgiri.bsky.social · 11/06/2026
Mitochondria directly interact with the nuclear pore complex www.nature.com/articles/s41...
nature.com
Mitochondria directly interact with the nuclear pore complex - Nature
Mitochondria interact directly with the nuclear pore complex via VDAC1–RANBP2 binding to sustain nuclear ATP levels.
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Mike Wiser @drmikewiser.bsky.social · 07/06/2026
My primary academic conference is in a few weeks. I have given a good number of conference presentations over the years, and possibly moderated even more often than I've presented. Advice for anyone who wants it, in a thread:
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Catalina Vasilescu, PhD @cvasilescu.bsky.social · 07/06/2026
A great new collection on #Mitochondria in #Health & #Disease with papers published last week! 📚 biomed.news/bims-mitdis/... Among highlights: 👉 TDP-43 oxidation and PP1 crosstalk at RNA granule-mitochondria contact sites @biomednews.bsky.social @gavinmcstay.bsky.social @mitoscientist.bsky.social
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London Mitochondrial Centre @londonmito.bsky.social · 05/06/2026
We are pleased to share a new review published in Cell Reports Medicine @cellpress.bsky.social: “Emerging therapeutic strategies for mitochondrial DNA-related diseases” Full article: doi.org/10.1016/j.xc... #Mitochondria #mtDNA #GeneTherapy #GenomeEditing #RareDiseases #TranslationalMedicine
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Payam Gammage @mito-oncogene.bsky.social · 02/06/2026
🚨Excited to announce a new preprint from our lab, where we describe an ancient metabolic axis that controls mitochondrial genome copy number; a mechanism we uncovered in human cells that stretches through evolution to control mtDNA in flies, yeast and even plants!
biorxiv.org
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Rahul Gupta @rahulg603.bsky.social · 01/06/2026
We took ~750,000 whole genomes and found the putative mechanism by which mitochondrial DNA mutations accumulate with age in blood. Spoiler: we think these mutations arise by replication error and tag age-related clonal hematopoiesis. Read @nature.com broad.io/ob2jft
broad.io
Mechanism of age-related accumulation of mtDNA mutations in human blood - Nature
Genome-wide analyses indicate that accumulation of mitochondrial DNA mutations, a hallmark of ageing, may be caused by cryptic replication errors, which act as passenger mutations that eventually become detectable with age owing to age-related somatic mosaicism, rather than oxidative damage.
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Anupam Patgiri @apatgiri.bsky.social · 31/05/2026
Super-resolution complexome of human mitochondria elucidates translocase, morphology and OXPHOS networks www.biorxiv.org/content/10.6...
biorxiv.org
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Anupam Patgiri @apatgiri.bsky.social · 29/05/2026
My wife captured this magical moment: a giraffe strolling past an acacia on the horizon as the sun rose over the Masai Mara National Reserve, Kenya (2024). One of those moments that reminds us how extraordinary the natural world can be. Happy Friday! 🌅🦒 #MasaiMara #Kenya #Safari #Wildlife #Sunrise
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Anupam Patgiri @apatgiri.bsky.social · 28/05/2026
Mitochondrial NADH-redox inflexibility constrains genomic and epigenetic stability in pluripotent stem cells link.springer.com/article/10.1...
link.springer.com
Mitochondrial NADH-redox inflexibility constrains genomic and epigenetic stability in pluripotent stem cells - The EMBO Journal
The electron transport chain (ETC) is essential for NAD+ regeneration and proliferation. While many cell types tolerate ETC inhibition when pyruvate or aspartate is supplied, pluripotent stem cells (P...
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Anupam Patgiri @apatgiri.bsky.social · 27/05/2026
Universal transcriptomic hallmarks of mammalian ageing and mortality www.nature.com/articles/s41...
nature.com
Universal transcriptomic hallmarks of mammalian ageing and mortality - Nature
Integration of gene expression data from multiple tissues across four mammalian species reveals conserved transcriptomic signatures of mammalian ageing and mortality and uncovers the modular...
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Anupam Patgiri @apatgiri.bsky.social · 27/05/2026
Mitochondrial complex I activity promotes antigen cross-presentation in dendritic cells www.science.org/doi/abs/10.1...
science.org
Mitochondrial complex I activity promotes antigen cross-presentation in dendritic cells
Mitochondrial complex I dysfunction in dendritic cells disrupts NAD+/NADH redox balance and impairs antigen cross-presentation.
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Anupam Patgiri @apatgiri.bsky.social · 21/05/2026
HCMV infection depends on EGLN1-mediated mitochondrial activation to increase dNTP pools for viral DNA replication www.cell.com/cell-reports...
cell.com
HCMV infection depends on EGLN1-mediated mitochondrial activation to increase dNTP pools for viral DNA replication
Simpson et al. report that HCMV utilizes EGLN1 to upregulate mitochondrial metabolism to support viral replication. EGLN1 is required for viral induction of dNTP synthesis to support viral DNA replica...
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Anupam Patgiri @apatgiri.bsky.social · 21/05/2026
Genetic analysis of circulating metabolic traits in 619,372 individuals www.nature.com/articles/s41...
nature.com
Genetic analysis of circulating metabolic traits in 619,372 individuals - Nature
A genome-wide association study combining data from the Estonian Biobank and the UK Biobank identifies many common and low-frequency locus–metabolic trait associations, enabling the identification of ...
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Ram Chakrabarty @rpc3312.bsky.social · 21/05/2026
Very happy to share our new paper. Together with our wonderful collaborators, we found that L-2-HG, a metabolite often viewed as “toxic,” also has an essential physiological function in mice. www.nature.com/articles/s41...
nature.com
Mitochondrial l-2-hydroxyglutarate is a physiological signalling metabolite - Nature
l-2-Hydroxyglutarate is identified as a legitimate physiological signalling metabolite, and control of its levels is essential for postnatal growth and survival and correct renal development and funct...
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Anupam Patgiri @apatgiri.bsky.social · 18/05/2026
Cardiolipin preserves Treg metabolic fitness and immune homeostasis in the gut www.nature.com/articles/s42...
nature.com
Cardiolipin preserves Treg metabolic fitness and immune homeostasis in the gut - Nature Metabolism
This study describes that cardiolipin deficiency-induced mitochondrial dysfunction in Treg cells impairs gut–immune tolerance.
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Korolchuk Lab @korolchuklab.bsky.social · 17/05/2026
There’s been lots of great science published in the past two weeks on #autophagy and #mTOR topics. Anyone with an interest in this area should look at these 👇🏼👇🏼👇🏼 biomed.news/bims-auttor/... biomed.news/bims-auttor/...
static.klipy.com
Blue Power Ranger Billy: Okay, Now That's Cool!
ALT: Blue Power Ranger Billy: Okay, Now That's Cool!
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Catalina Vasilescu, PhD @cvasilescu.bsky.social · 17/05/2026
New selection of papers on #Mitochondria in #Health & #Disease! 📚 biomed.news/bims-mitdis/... New tool Universal conditional knockout approach to multiple species.. pubmed.ncbi.nlm.nih.gov/42132111/ @biomednews.bsky.social @gavinmcstay.bsky.social @mitoscientist.bsky.social @mito-news.bsky.social
Universal conditional knockout approach to multiple species, from fish to human induced pluripotent stem cells
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Anupam Patgiri @apatgiri.bsky.social · 11/05/2026
Enrichment of Rare mtDNA Variants Among Individuals with Kidney Disease Reveals Undiagnosed Mitochondrial Disease www.sciencedirect.com/science/arti...
sciencedirect.com
Enrichment of Rare mtDNA Variants Among Individuals with Kidney Disease Reveals Undiagnosed Mitochondrial Disease
Pathogenic mitochondrial DNA (mtDNA) variants cause multisystem disease, yet their contribution to kidney disease remains incompletely characterized, …
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Yale Cancer Center @yalecancer.bsky.social · 08/05/2026
A Yale-led innovation based on research by @craigmcrews.bsky.social, has received FDA approval for #breastcancer treatment. #Vepdegestrant marks a major milestone for PROTAC technology and targeted protein degradation in oncology. news.yale.edu/2026/05/07/y...
news.yale.edu
Yale-led technology receives FDA approval for breast cancer treatment
The biotech company Arvinas was originally founded based on pioneering research from Yale chemist Craig Crews into PROTAC protein degraders.
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Lucas Sullivan @lucasbsullivan.bsky.social · 09/05/2026
Also, check out this excellent N&V writeup from @frezzalab.bsky.social that nicely summarizes our findings and contextualizes them with other fascinating work on succinate interactions with nucleotide synthesis from the @bensahralab.bsky.social and Hirschey Labs! www.nature.com/articles/s42...
nature.com
Succinate calls a time-out on pyrimidine biosynthesis - Nature Metabolism
Cell metabolism is a dynamic network of highly interconnected biochemical reactions. In this issue of Nature Metabolism, time-lapse analysis of the amino acid aspartate revealed an unexpected regulati...
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Lucas Sullivan @lucasbsullivan.bsky.social · 09/05/2026
New out this week in @natmetabolism.nature.com – We measured dynamic aspartate changes following mitochondrial inhibition, finding that SDH inhibition causes a counterintuitive "aspartate rebound" effect, mediated by succinate impairing pyrimidine synthesis. www.nature.com/articles/s42...
nature.com
Succinate dehydrogenase loss suppresses pyrimidine biosynthesis via succinate-mediated inhibition of aspartate transcarbamylase - Nature Metabolism
Succinate acts as a competitive inhibitor of mammalian aspartate transcarbamylase (ATCase), leading to impaired pyrimidine biosynthesis and reduced proliferation under SDH inhibition.
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Anupam Patgiri @apatgiri.bsky.social · 09/05/2026
Metformin inhibits mitochondrial complex I in intestinal epithelium to promote glycaemic control www.nature.com/articles/s42...
nature.com
Metformin inhibits mitochondrial complex I in intestinal epithelium to promote glycaemic control - Nature Metabolism
Metformin is shown to exert its glucose-lowering and additional clinical effects through inhibition of mitochondrial complex I in the intestinal epithelium in mice.
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Amar Sahay @amarsahay.bsky.social · 06/05/2026
It takes a village, every step matters. Basic science, NIH funding, Biotech, Patient advocacy, FDA, and Insurance. In a Milestone for A.L.S., a Treatment Helps Some Patients Improve www.nytimes.com/2026/05/06/w...
nytimes.com
In a Milestone for A.L.S., a Treatment Helps Some Patients Improve
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Anupam Patgiri @apatgiri.bsky.social · 30/04/2026
De novo design of protein binders that target DELE1 to inhibit the mitochondrial stress response www.biorxiv.org/content/10.6...
biorxiv.org
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Anupam Patgiri @apatgiri.bsky.social · 28/04/2026
Oral LNAD+ Rapidly Elevates Intracellular NAD and Metabolic Flux Without Elevating Circulating NAD: Evidence from a Randomized Controlled Trial www.biorxiv.org/content/10.6...
biorxiv.org
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