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Alireza Mashaghi

@alirezamashaghi.bsky.social
1.9K followers 266 following 73 posts

Scientist, Physician, University Professor (UHD) at Leiden University, Scientist at Harvard, ETH Zürich Alumni; Views my own. Website: www.mashaghilab.org

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Alireza Mashaghi @alirezamashaghi.bsky.social · 23/09/2026
We are pleased to announce that Dr. Vahid Sheikhhassani from our laboratory will present at the SINO BIOLOGICAL Science Seminar at #Leiden BioScience Park. #BiomolecularCondensate #Mechanobiology #DrugDiscovery #LLPS #ChemSky www.eventbrite.nl/e/sino-biolo...
eventbrite.nl
Sino Biological - Leiden Bio Science Park - Science Seminar
This event will bring together interesting speakers working in drug discovery from both academia and biotech from the Leiden Bioscience Park
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Alireza Mashaghi @alirezamashaghi.bsky.social · 21/07/2026
Read our new article on biomolecular condensates! www.nature.com/articles/s41...
nature.com
Optically driven control of mechanochemistry and fusion dynamics of biomolecular condensates via thymine dimerization - Nature Communications
Understanding and controlling phase-separated biomolecular condensate mechanochemistry is critical for their function and material properties. In this study, the authors developed assays that enable t...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 18/07/2026
On our efforts to bridge disciplines for biomedical innovation! www.youtube.com/watch?v=-rlh... #ChemSky #MedSky #EngSky #PharmSky
youtube.com
The Mashaghi Lab: Bridging Disciplines for Biomedical Innovation
YouTube video by Alireza Mashaghi Lab
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Alireza Mashaghi @alirezamashaghi.bsky.social · 18/07/2026
Press release on a new award for our lab! qdnl.nl/news/quantum...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 07/07/2026
Excited to share that Vahid Sheikhhassani is presenting our lab’s latest advances in biomolecular condensate research at the Dutch Medicine Days! Looking forward to discussing new insights and connecting with colleagues across the field. #ChemSky #FIGON
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Reposted by Alireza Mashaghi
Universiteit Leiden @unileiden.bsky.social · 25/06/2026
Als eerste ter wereld heeft het laboratorium van onderzoeker Alireza Mashaghi een quantum biosensor-installatie in gebruik genomen. Hiermee kunnen supersnelle en haast onzichtbare veranderingen in cellen worden waargenomen. Dat levert essentiële informatie op voor behandelingen van ziekten.
universiteitleiden.nl
Eerste quantum biosensor ‘ziet’ razendsnelle veranderingen in cellen
Als eerste ter wereld heeft het laboratorium van Leids onderzoeker Alireza Mashaghi een quantum biosensor-installatie van QT-Sense in gebruik genomen. Hiermee kunnen supersnelle en haast onzichtbare v...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 25/06/2026
Our quantum sensing research is featured on the front page of the Leiden University website today! Thanks to our team and collaborators for their dedication and contributions to this exciting work. www.universiteitleiden.nl/en/news/2026... #QuantumSensing #QuantumTechnology #ChemSky
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Alireza Mashaghi @alirezamashaghi.bsky.social · 04/06/2026
Through a series of papers, we demonstrated the applicability of scanning probe microscopy to biomolecular condensate analysis! Droplet fusion: doi.org/10.1038/s414... Droplet rheology: doi.org/10.1016/j.xc... doi.org/10.1016/j.xp... Droplet-cell interaction: doi.org/10.1016/j.ce... #ChemSky #AFM
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Alireza Mashaghi @alirezamashaghi.bsky.social · 17/04/2026
This week, we installed a first-of-its-kind quantum sensing platform in our lab! As part of our lab’s mission to advance #interdisciplinary research, we’re bringing #quantum sensing into #pharmacology. #ChemSky
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Alireza Mashaghi @alirezamashaghi.bsky.social · 10/04/2026
With my team this Friday evening, concluding our lab work with an outing in the city!
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Alireza Mashaghi @alirezamashaghi.bsky.social · 03/04/2026
Press release: Light switch for life – controlling biomolecular condensate droplets with UV! Read our new article in Nature Communications! www.universiteitleiden.nl/en/news/2026... #ChemSky #BiomolecularCondensate #SoftMatter #Protocell #Polyelectrolyte
universiteitleiden.nl
Light switch for life: controlling molecular droplets with UV
Leiden researchers have discovered a surprising new way to shape and control tiny droplets of molecules found in living organisms. The breakthrough could lead to smarter biomaterials, improve drug del...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 01/04/2026
On our fight against Dengue virus disease! www.leidenconventionbureau.nl/en/science-c...
leidenconventionbureau.nl
A new dengue virus model has been developed in Leiden | Leiden Convention Bureau
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Alireza Mashaghi @alirezamashaghi.bsky.social · 28/03/2026
A new study by Runfeng Lin & Sebastian Ahnerton from Cambridge University on the application of Circuit Topology in Protein Science: "Millisecond Prediction of Protein Contact Maps from Amino Acid Sequences" www.biorxiv.org/content/10.6... #ChemSky #Topology #StructuralBiology #Bioinformatics
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Alireza Mashaghi @alirezamashaghi.bsky.social · 21/03/2026
Interest grows in #quantum physics for #biology. Sharing our early quantum calculations on #biomolecular structure, dynamics, and electrical properties: Interfacial water facilitates energy transfer by inducing extended vibrations in membrane lipids. pubs.acs.org/doi/10.1021/... #ChemSky
pubs.acs.org
Interfacial Water Facilitates Energy Transfer by Inducing Extended Vibrations in Membrane Lipids
We report the complete assignment of the vibrational spectrum of dipalmitoylphosphatidylcholine (DPPC), which belongs to the most ubiquitous membrane phospholipid family, phosphatidylcholine. We find ...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 10/02/2026
Delighted to share our new study, "Topological Investigation of Protein Folding and Intrinsic Disorder". We ask whether topology provides a unifying structural language across the order–disorder continuum! doi.org/10.64898/202... #ChemSky #Protein #IDP #Topology #Biophysics
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Alireza Mashaghi @alirezamashaghi.bsky.social · 16/01/2026
My laboratory has an open postdoctoral position in the field of biomolecular condensate mechanochemistry! Please inquire if you are interested in interdisciplinary, cutting-edge research! www.mashaghilab.org/vacancies (Deadline: February 8, 2026) #ChemSky #Mechanobiology #Biomolecular_Condensate
mashaghilab.org
Mashaghi Lab - Vacancies
Community science: Since 1996, Alireza Mashaghi has actively advocated for collaborations between disciplines to explore new ways of addressing scientific and societal challenges. The team has a long...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 10/01/2026
RNA topology: from simple loops to complex circuits chemrxiv.org/engage/chemr... #ChemSky #RNA #Biophysics
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Alireza Mashaghi @alirezamashaghi.bsky.social · 13/12/2025
Learning capacity and function of stochastic reaction networks iopscience.iop.org/article/10.1... #ChemSky #Network #Physics #Stochasticity #Learning
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Alireza Mashaghi @alirezamashaghi.bsky.social · 06/12/2025
Impressive work by Dr. Jonas Berx and co-workers in the Journal of Chemical Physics on the topological organization of polymeric aggregates! doi.org/10.1063/5.02... #ChemSky #Topology #Polymer #Biophysics #SoftMatter
doi.org
Interplay of coil–globule transitions and aggregation in homopolymer aqueous solutions: Simulation and topological insights
We investigate the structural and topological properties of hydrophobic homopolymer chains in aqueous solutions using molecular dynamics simulations and circuit
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Alireza Mashaghi @alirezamashaghi.bsky.social · 27/11/2025
Good luck, Tony! You have been an inspiration to many! Thank you! @hymanlab.bsky.social
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Alireza Mashaghi @alirezamashaghi.bsky.social · 21/11/2025
On circuit topology of knots! Circuit topology for bottom-up engineering of molecular knots doi.org/10.3390/sym1... A tile model of circuit topology for entangled biopolymers www.nature.com/articles/s41... Polynomial invariant of molecular circuit topology doi.org/10.3390/sym1... #ChemSky #knot
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Alireza Mashaghi @alirezamashaghi.bsky.social · 10/11/2025
Our protocol on "Scanning probe microscopy for rheological analysis of biomolecular condensates" is now available for interested users! doi.org/10.1016/j.xp... #ChemSky #Biphysics #Biomolecular_Condensates #IDP #Rheology #AFM
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Alireza Mashaghi @alirezamashaghi.bsky.social · 06/11/2025
Vasily from our team was invited to present at the #NRRN meeting on “Conformational Dynamics and Chromatin Assembly of #Glucocorticoid Receptor Using Topological Modeling and Single-Molecule Analysis.” Looking forward to connecting with researchers on advances in nuclear receptor research. #ChemSky
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Alireza Mashaghi @alirezamashaghi.bsky.social · 29/10/2025
We discovered that the "orphan" nuclear receptor Nur77 binds DNA under regulation by #glucocorticoid receptor & glucocorticoids. The synthetic glucocorticoid dexamethasone directly interacts with Nur77, revealing a new function for this drug & a potential ligand for Nur77. doi.org/10.1101/2025...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 23/10/2025
We’re excited to share our new #PyMOL plugin for protein topology analysis, now available! doi.org/10.1101/2025... Link to the report and the GitHub repository: We’d appreciate your feedback — please try it out in PyMOL and report any bugs or suggestions! #ChemSky #IDP #Topology #Bioinformatics
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Alireza Mashaghi @alirezamashaghi.bsky.social · 15/10/2025
An interview with Stanford scientist Jonathan Chen on Medical #AI! Also, see the piece we co-authored on Statistical #Physics and its applications in #Medicine: pubmed.ncbi.nlm.nih.gov/33228143/
pubmed.ncbi.nlm.nih.gov
Statistical Physics for Medical Diagnostics: Learning, Inference, and Optimization Algorithms - PubMed
It is widely believed that cooperation between clinicians and machines may address many of the decisional fragilities intrinsic to current medical practice. However, the realization of this potential ...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 14/10/2025
Our postdoctoral researcher Aida Naghilou presented our lab’s development of SPM-based technology for biomolecular condensate analysis at the Erwin Schrödinger Institute during the workshop “Charged Soft Matter: Bridging Theory and Experiment”! www.youtube.com/playlist?lis... #ChemSky #SoftMatter
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Alireza Mashaghi @alirezamashaghi.bsky.social · 23/09/2025
We recently had some fun with protamine, which we used to model the Aggregate-to-Condensate transition in polyelectrolyte systems! pubs.acs.org/doi/10.1021/... #ChemSky #Bioengineering
pubs.acs.org
Protamine Drives Liquid and Solid Condensation of DNA and Glycosaminoglycans
Phase-separated biomolecular condensates play a crucial role in cellular organization. In the nucleus, phase separation regulates the assembly and function of nuclear proteins and the genome. Here, we...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 11/09/2025
We recently carried out the first single-molecule analysis of protein folding & unfolding in a cytosolic environment using optical tweezers—moving beyond simplistic buffer conditions to study proteins where they actually function. advanced.onlinelibrary.wiley.com/doi/10.1002/... #ChemSky #Biophysics
advanced.onlinelibrary.wiley.com
Cytosolic Interactome Protects Against Protein Unfolding in a Single Molecule Experiment
Single molecule experiments aimed at probing protein folding are typically performed in buffer conditions and cannot therefore be representative of the multi-faceted and complex cooperative interacti...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 09/09/2025
PhD student Vasily Akulov from our group is presenting our collaborative research with Eva Estébanez-Perpiñá’s group at the EMBO Workshop in Palermo, Italy! meetings.embo.org/event/25-str... #EMBO #StructuralBiology #IDP #Topology
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Alireza Mashaghi @alirezamashaghi.bsky.social · 31/07/2025
On extracellular #biomolecular condensates! We demonstrate that phase-separated #condensate #droplets can form and function in the #extracellular environment and may interact with cells! www.sciencedirect.com/science/arti... #CellBiology #Biophysics #ChemicalEngineering #SyntheticBiology #ChemSky
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Alireza Mashaghi @alirezamashaghi.bsky.social · 26/07/2025
Check out our research on Semantic Topology at the 63rd Annual Meeting of the Association for Computational Linguistics (ACL 2025) in Vienna next week! #ACL2025 #Interdisciplinary #Semantics
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Alireza Mashaghi @alirezamashaghi.bsky.social · 25/07/2025
Semantic Topology: a New Perspective for Communication Style Characterization aclanthology.org/2025.finding... #Linguistics #NLProc #ACL2025NLP #ACL2025
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Alireza Mashaghi @alirezamashaghi.bsky.social · 19/07/2025
On disordered topologically compact states in intrinsically disordered proteins! We explored this concept in the context of the human Glucocorticoid Receptor. pubs.acs.org/doi/10.1021/... #ChemSky #IDP #Protein #Biophysics #Topology #CompChem
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Alireza Mashaghi @alirezamashaghi.bsky.social · 17/07/2025
New Boltzmann Medalist Mehran Kardar at StatPhys29 in Florence, showing the first handmade slide that led to the #KPZ equation. #StatisticalPhysics #Physics Photo: Andrea Gabrielli
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Alireza Mashaghi @alirezamashaghi.bsky.social · 03/06/2025
Team snapshot after our regular group meeting — this time with a great talk by Muriel Hammond on intrinsically disordered proteins!
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Alireza Mashaghi @alirezamashaghi.bsky.social · 25/05/2025
For those interested in topological analysis of biomolecular condensates! Article 1: link.springer.com/article/10.1... Article 2: www.sciencedirect.com/science/arti... #Topology #Condensate #PhaseSeparation #Aggregation #ChemSky #Biophysics #Polymer #Nanoscience
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Alireza Mashaghi @alirezamashaghi.bsky.social · 15/05/2025
The first model of full length human androgen receptor and its polyQ expanded variant! onlinelibrary.wiley.com/doi/full/10.... onlinelibrary.wiley.com/doi/full/10.... #endocrinology #androgen #hormone #receptor #SBMA #polyglutamine #prostate
onlinelibrary.wiley.com
Polyglutamine expansion induced dynamic misfolding of androgen receptor
Spinal bulbar muscular atrophy (SBMA) is caused by a polyglutamine expansion (pQe) in the N-terminal transactivation domain of the human androgen receptor (AR-NTD), resulting in a combination of toxi...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 11/05/2025
PhD student Laurens Heling from my laboratory will be presenting a the #LACDR Spring Symposium! "Single Molecule Analysis Reveals Allosteric Regulation of #Androgen #Receptor DNA Binding​" #SingleMolecule #Biophysics #Endocrinology
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Alireza Mashaghi @alirezamashaghi.bsky.social · 14/04/2025
news.harvard.edu
3 Harvard scientists awarded Breakthrough Prizes — Harvard Gazette
“Oscars of Science” recognize major advances in gene editing and against MS and obesity.
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Reposted by Alireza Mashaghi
Leiden Science @leidenscience.bsky.social · 10/04/2025
Researchers at Leiden University have created a unique model that mimics how disease develops after a dengue infection. This 'dengue-on-a-chip' model helps them study the virus more effectively. The timing is crucial, as climate change is causing dengue to spread worldwide. Read more:
universiteitleiden.nl
Leiden scientists create first-ever dengue-on-a-chip to study this deadly virus
Researchers at Leiden University have created a unique model that mimics how disease develops after a dengue infection. This 'dengue-on-a-chip' model helps them study the virus more effectively. The t...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 25/03/2025
Research update from our lab: Dengue-on-a-chip and single-cell rheology reveal that Dengue is a "disease of mechanics"! #Bioengineering #Virology #Infection #Mechanobiology pubs.acs.org/doi/10.1021/...
pubs.acs.org
Revealing Mechanopathology Induced by Dengue NS1 Using Organ Chips and Single-Cell Force Spectroscopy
Capillary leakage is a hallmark of severe dengue, yet its precise mechanisms remain elusive. Emerging evidence highlights the dengue virus’s targeting of mechanically active endothelial cells as a key contributor to dengue shock syndrome. The viral nonstructural protein 1 (NS1) has been identified as a central player, disrupting endothelial integrity and inducing vascular hyperpermeability independently of pro-inflammatory cytokines. This study provides a direct assessment of NS1-induced endothelial pathology by combining single-cell force spectroscopy and a microvessel-on-a-chip platform. We demonstrate that NS1 significantly alters endothelial cell mechanics, reducing cell stiffness and compromising junctional integrity, thereby directly linking these mechanical alterations to vascular dysfunction. These findings establish a framework for understanding the mechano-pathology of dengue and offer a platform for developing targeted therapeutic strategies to mitigate severe disease outcomes.
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Alireza Mashaghi @alirezamashaghi.bsky.social · 14/02/2025
Research update from our lab: We reported the first use of Scanning Probe Microscopy in biomolecular condensate research! #ChemSky #Interdisciplinary #Biophysics #Mechanics #Rheology www.universiteitleiden.nl/en/news/2025...
universiteitleiden.nl
From liquid to solid: revolutionary technique uncovers disease-related changes in tiny droplets within our cells
Understanding the behaviour of tiny droplets in our cells could aid the search for new treatments. A team of Leiden researchers has developed a groundbreaking method to study how these droplets transi...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 22/01/2025
At NWO Physics conference in Veldhoven! Our team presented on biomolecular condensates and circuit topology! #NWO #Physics #NWOPhysics #SoftMatter #Topology #Materials
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Alireza Mashaghi @alirezamashaghi.bsky.social · 15/12/2024
A glimpse into our research at the exciting intersection of physical sciences and medicine/pharmacy! www.youtube.com/watch?v=a4jR... #interdisciplinary #Medicine #Physics #Chemistry #Engineering #Mathematics #Computational #SocialScience
youtube.com
The Mashaghi Lab for Interdisciplinary Medical Innovations
YouTube video by Alireza Mashaghi Lab
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Alireza Mashaghi @alirezamashaghi.bsky.social · 11/12/2024
On topological analysis of single-cell HiC data! #genome #chromatin #bioinformatics #SingleCell link.springer.com/protocol/10.... www.sciencedirect.com/science/arti...
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Alireza Mashaghi @alirezamashaghi.bsky.social · 04/12/2024
"Substance P: From Pain to Cancer" is now in print! We contributed a chapter on immunobiology and pharmacology of neuropeptide substance P! www.sciencedirect.com/science/arti... #immunology #neurology #neuropeptide #pharmacology #ChemSky
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Alireza Mashaghi @alirezamashaghi.bsky.social · 03/12/2024
While human #proteins span a wide range of molecular weights, from approximately 0.26 to 4000 kDa, human chemokines are restricted to a narrow range of about 8 to 14 kDa. We asked whether there might be an optimality in #cellular #communications. arxiv.org/abs/2412.00771 #Immunology #Chemokine
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Alireza Mashaghi @alirezamashaghi.bsky.social · 01/12/2024
Our work on the cover of Materials Advances! Single-cell analysis of innate immune cell mechanics: an application to cancer immunology pubs.rsc.org/en/content/a... #immunology #innateimmunity #immunomechanics #mechanobiology #SingleCell
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Alireza Mashaghi @alirezamashaghi.bsky.social · 29/11/2024
On catalytic microswimmers: the motion of catalytically active colloids approaching a surface arxiv.org/abs/2411.11656 #Colloids #ActiveMatter #ChemSky #Catalysis
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