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Khalimonchuk Lab

@mitocrue.bsky.social
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Semper vestigans | All things mitochondria biochem.unl.edu/oleh-khalimonchuk-l…

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Khalimonchuk Lab @mitocrue.bsky.social · 05/08/2026
An ancient mitochondrial program tunes translation to haem availability
nature.com
An ancient mitochondrial program tunes translation to haem availability - Nature
An evolutionarily conserved mitochondrial haem-sensing mechanism that predates the emergence of haemoglobin-based oxygen transport could have therapeutic value in iron deficiency disorders.
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Reposted by Khalimonchuk Lab
Nitish Dua @nitishdua.bsky.social · 27/06/2026
Really hyped to share our pre-print on mtDNA replication-fission ! @nanigrotjahn.bsky.social (doi: doi.org/10.64898/202...) 🧵with details below ⤵️
doi.org
ATAD3A structurally links mtDNA replication and mitochondrial fission
Mitochondrial function depends on the maintenance of its genome, and disruptions in copy number and distribution are hallmarks of mitochondrial disorders. Mitochondrial DNA (mtDNA) replication is spat...
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Khalimonchuk Lab @mitocrue.bsky.social · 20/05/2026
Our latest publication is out. Kudos to all involved!
jbc.org
Molecular analysis of a new patient COX15 mutation provides insight into the etiology of fatal infantile cardioencephalopathy
Mitochondrial disease can result from mutations in the enzymes responsible for biosynthesis of heme a and hemylation of respiratory complex IV of the electron transport chain, also known as cytochrome...
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Khalimonchuk Lab @mitocrue.bsky.social · 20/05/2026
Mitochondrial L-2-hydroxyglutarate is a physiological signalling metabolite
nature.com
Mitochondrial l-2-hydroxyglutarate is a physiological signalling metabolite - Nature
l-2-Hydroxyglutarate is identified as a legitimate physiological signalling metabolite, and control of its levels is essential for postnatal growth and survival and correct renal development and funct...
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Khalimonchuk Lab @mitocrue.bsky.social · 25/04/2026
A cell-nonautonomous heme acquisition pathway enables erythroid hemoglobinization under stress.
science.org
A cell-nonautonomous heme acquisition pathway enables erythroid hemoglobinization under stress
Heme, an iron-containing cofactor, is synthesized in mitochondria by an eight-enzyme pathway. Although cells were thought to manage heme autonomously, more than 1000 proteins contribute to its product...
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Reposted by Khalimonchuk Lab
American Society for Biochemistry and Molecular Biology @asbmb.bsky.social · 26/03/2026
🔬 You helped move the field forward at ASBMB 2026. 💬 Ready to keep the conversation going? Submit your idea for a mini-symposium, interest group session or workshop for ASBMB 2027. ➡️ www.asbmb.org/annual-meeti... #ASBMB27 #ResearchCommunity #ScientificConference
asbmb.org
Proposals
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Khalimonchuk Lab @mitocrue.bsky.social · 01/03/2026
Stress adaptation of mitochondrial protein import by OMA1-mediated degradation of DNAJC15
nature.com
Stress adaptation of mitochondrial protein import by OMA1-mediated degradation of DNAJC15 - Nature Structural & Molecular Biology
Kroczek et al show that degradation of DNAJC15 by OMA1 and AFG3L2 under stress limits mitochondrial protein import and OXPHOS biogenesis. Non-imported proteins lead to the induction of the unfolded pr...
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Khalimonchuk Lab @mitocrue.bsky.social · 22/02/2026
Structural evolution of the MTCH family of mitochondrial insertases.
biorxiv.org
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Khalimonchuk Lab @mitocrue.bsky.social · 20/12/2025
The TIM22 carrier translocase supports cell proliferation by facilitating mitochondrial iron uptake for Fe-S biogenesis
cell.com
The TIM22 carrier translocase supports cell proliferation by facilitating mitochondrial iron uptake for Fe-S biogenesis
Extensive metabolite exchanges occur between mitochondria and the cytosol through the action of transporter proteins, which are placed onto the inner mitochondrial membrane by the TIM22 carrier transl...
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Khalimonchuk Lab @mitocrue.bsky.social · 12/12/2025
Mutations in mitochondrial ferredoxin FDX2 suppress frataxin deficiency
nature.com
Mutations in mitochondrial ferredoxin FDX2 suppress frataxin deficiency - Nature
A forward genetic screen in Caenorhabditis elegans reveals that decreased levels of the ferredoxin FDX2 suppress the loss of frataxin in worms and in mice by relief of FDX2 inhibition of fra...
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Khalimonchuk Lab @mitocrue.bsky.social · 11/12/2025
A direct role for a mitochondrial targeting sequence in signalling stress
nature.com
A direct role for a mitochondrial targeting sequence in signalling stress - Nature
Cells can sense mitochondrial damage through signalling via an unimported mitochondrial targeting sequence.
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Khalimonchuk Lab @mitocrue.bsky.social · 05/12/2025
Structure and mechanism of the mitochondrial calcium transporter NCLX.
nature.com
Structure and mechanism of the mitochondrial calcium transporter NCLX - Nature
Cryogenic electron microscopy structures and functional analyses reveal that NCLX functions as a H+/Ca2+ rather than a Na+/Ca2+ exchanger, and uncover its transport mechanism with implications for the...
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Khalimonchuk Lab @mitocrue.bsky.social · 14/11/2025
Monitoring the complexity and dynamics of mitochondrial translation
cell.com
Monitoring the complexity and dynamics of mitochondrial translation
Wakigawa et al. present advanced derivatives of mitochondrial ribosome profiling. By quantifying initiation, elongation, and ribosome collisions and by dissecting the impacts of tRNA anticodon-loop mo...
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Khalimonchuk Lab @mitocrue.bsky.social · 22/10/2025
Delayed protein translocation protects mitochondria against toxic CAT-tailed proteins
cell.com
Delayed protein translocation protects mitochondria against toxic CAT-tailed proteins
mitoRQC protects mitochondria against toxic CAT-tailed proteins. Using a genome-wide screen, Bertram et al. identify Pth2 as a peptidyl-tRNA hydrolase within mitoRQC. Pth2 modulates the import of CAT-...
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Khalimonchuk Lab @mitocrue.bsky.social · 14/10/2025
MAPL regulates gasdermin-mediated release of mtDNA from lysosomes to drive pyroptotic cell death
nature.com
MAPL regulates gasdermin-mediated release of mtDNA from lysosomes to drive pyroptotic cell death - Nature Cell Biology
Nguyen, Collier et al. find a mitochondria–lysosome inflammatory pathway regulated by the SUMO E3 ligase MAPL, which promotes vesicular mtDNA transport to lysosomes and subsequent gasdermin-dependent ...
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Reposted by Khalimonchuk Lab
Science Magazine @science.org · 09/10/2025
Mitochondrial diseases have seemed intractable, but last month the Food and Drug Administration OK’d the first treatment targeting a mitochondrial flaw. scim.ag/4q3Ymxz
scim.ag
First approved drug for mitochondrial disease could pave way for more treatments
Researchers are testing multiple treatments for the rare genetic conditions
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Khalimonchuk Lab @mitocrue.bsky.social · 28/08/2025
Dynamic TOM–TIM23 supercomplex directs mitochondrial protein translocation and sorting.
nature.com
Dynamic TOM–TIM23 supercomplex directs mitochondrial protein translocation and sorting - Nature Structural & Molecular Biology
Yang et al. uncover the molecular details of how mitochondrial proteins cross the outer and inner mitochondrial membranes, with hydrophobicity guiding them into distinct pathways toward specific desti...
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Khalimonchuk Lab @mitocrue.bsky.social · 27/08/2025
Proximity-specific ribosome profiling reveals the logic of localized mitochondrial translation
sciencedirect.com
Proximity-specific ribosome profiling reveals the logic of localized mitochondrial translation
Localized translation broadly enables spatiotemporal control of gene expression. Here, we present LOV-domain-controlled ligase for translation localiz…
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Khalimonchuk Lab @mitocrue.bsky.social · 15/08/2025
Super-resolution microscopy of mitochondrial mRNAs
idp.nature.com
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Khalimonchuk Lab @mitocrue.bsky.social · 17/07/2025
Mitochondrial origins of the pressure to sleep
nature.com
Mitochondrial origins of the pressure to sleep - Nature
Research on Drosophila neurons shows links between the need to sleep and aerobic metabolism, indicating that the pressure to sleep may have a mitochondrial origin.
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Khalimonchuk Lab @mitocrue.bsky.social · 08/07/2025
Small molecule OPA1 inhibitors amplify cytochrome c release and reverse cancer cells resistance to Bcl-2 inhibitors
t.co
https://www.science.org/doi/10.1126/sciadv.adx4562?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
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Khalimonchuk Lab @mitocrue.bsky.social · 27/06/2025
Interaction with AK2A links AIFM1 to cellular energy metabolism
cell.com
Interaction with AK2A links AIFM1 to cellular energy metabolism
AIFM1 is crucial for mitochondrial function. Here, Rothemann, Pavlenko et al. show that AK2A interacts with NADH-dependent AIFM1 dimers. They demonstrate that this interaction stabilizes AIFM1 dimers ...
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Khalimonchuk Lab @mitocrue.bsky.social · 23/06/2025
ACAD10 and ACAD11 enable mammalian 4-hydroxy acid lipid catabolism
nature.com
ACAD10 and ACAD11 enable mammalian 4-hydroxy acid lipid catabolism - Nature Structural & Molecular Biology
Rashan, Bartlett and colleagues show that mammalian 4-hydroxy fatty acids are primarily catabolized by ACAD10 and ACAD11 (atypical mitochondrial and peroxisomal acyl-CoA dehydrogenases, respectively) ...
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Khalimonchuk Lab @mitocrue.bsky.social · 16/06/2025
🔥🔥 Structural mechanism of mitochondrial membrane remodelling by human OPA1
nature.com
Structural mechanism of mitochondrial membrane remodelling by human OPA1 - Nature
Human OPA1 embeds itself into cardiolipin-containing membranes through a lipid-binding paddle domain, and OPA1 oligomerization through multiple assembly interfaces promotes the helical assembly of a f...
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Khalimonchuk Lab @mitocrue.bsky.social · 01/06/2025
Excited to visit LMU!
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Khalimonchuk Lab @mitocrue.bsky.social · 24/05/2025
Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein
embopress.org
Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein | The EMBO Journal
imageimageBcs1 is an unusual, heptameric AAA-ATPase that translocates its cargo, Rip1, across the inner mitochondrial membrane in a fully folded state. Cryo-EM and functional data provide novel insigh...
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Reposted by Khalimonchuk Lab
Science Magazine @science.org · 23/05/2025
Researchers in Science have developed a tool to silence specific mitochondria-encoded mRNAs in living cells, which could help scientists understand the origins of certain mitochondria-related diseases. scim.ag/3F6Wm5d
scim.ag
Silencing mitochondrial gene expression in living cells
Mitochondria fulfill central functions in metabolism and energy supply. They express their own genome, which encodes key subunits of the oxidative phosphorylation system. However, central mechanisms u...
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Reposted by Khalimonchuk Lab
Kondadi Lab @kondadilab.bsky.social · 21/05/2025
What complex are you if you have a very versatile company in close proximity? The MICOS Complex. We present the MINDNet: Proximity Proteomics revealing the nanodomain interactome in the mitochondrial inner membrane, done by the talented Yulia and team.
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Khalimonchuk Lab @mitocrue.bsky.social · 15/05/2025
Molecular machineries shaping the mitochondrial inner membrane.
nature.com
Molecular machineries shaping the mitochondrial inner membrane - Nature Reviews Molecular Cell Biology
The inner mitochondrial membrane forms cristae, which are crucial for mitochondrial function. This Review explores the protein complexes that regulate cristae dynamics, including remodelling and fusio...
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Reposted by Khalimonchuk Lab
bioRxivpreprint @biorxivpreprint.bsky.social · 02/05/2025
Fmp30 is a phosphatidylinositol hydrolase that regulates CoQ biosynthesis www.biorxiv.org/content/10.1101/202…
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Khalimonchuk Lab @mitocrue.bsky.social · 25/04/2025
Structures of human organellar SPFH protein complexes
biorxiv.org
Structures of human organellar SPFH protein complexes
Stomatin, Prohibitin, Flotillin, and HflK/C (SPFH) family proteins are found in all kingdoms of life and in multiple eukaryotic organelles. SPFH proteins assemble into homo- or hetero-oligomeric rings...
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Khalimonchuk Lab @mitocrue.bsky.social · 19/04/2025
Molecular basis of pyruvate transport and inhibition of the human mitochondrial pyruvate carrier
science.org
Molecular basis of pyruvate transport and inhibition of the human mitochondrial pyruvate carrier
The mitochondrial pyruvate carrier transport mechanism is ΔpH driven and is inhibited competitively by distinct compound classes.
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Khalimonchuk Lab @mitocrue.bsky.social · 09/04/2025
Small molecules restore mutant mitochondrial DNA polymerase activity
t.co
https://www.nature.com/articles/s41586-025-08856-9
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Khalimonchuk Lab @mitocrue.bsky.social · 30/03/2025
Running a genetic stop sign accelerates oxygen metabolism and energy production in horses
science.org
Running a genetic stop sign accelerates oxygen metabolism and energy production in horses
Horses are among nature’s greatest athletes, yet the ancestral molecular adaptations fueling their energy demands are poorly understood. Within a clinically important pathway regulating redox and meta...
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Khalimonchuk Lab @mitocrue.bsky.social · 26/03/2025
Oxidation of retromer complex controls mitochondrial translation
nature.com
Oxidation of retromer complex controls mitochondrial translation - Nature
Systematic base-editing and computational screens identify specific cysteine residues on VPS35 in the retromer complex as key sensors that decrease mitochondrial translation in response to reactive ox...
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Khalimonchuk Lab @mitocrue.bsky.social · 23/03/2025
A splendid molecular factory: De- and reconstruction of the mammalian respiratory chain
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Khalimonchuk Lab @mitocrue.bsky.social · 22/03/2025
In situ architecture of the human prohibitin complex
nature.com
In situ architecture of the human prohibitin complex - Nature Cell Biology
Lange, Ratz, et al. investigate the number and distribution of human prohibitin complexes in the mitochondrial inner membrane, uncovering their bell-shaped structure and assembly of alternating PHB1 a...
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Khalimonchuk Lab @mitocrue.bsky.social · 21/03/2025
In-cell architecture of the mitochondrial respiratory chain
science.org
In-cell architecture of the mitochondrial respiratory chain
Mitochondria regenerate adenosine triphosphate (ATP) through oxidative phosphorylation. This process is carried out by five membrane-bound complexes collectively known as the respiratory chain, workin...
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Khalimonchuk Lab @mitocrue.bsky.social · 13/03/2025
🔥🔥 Structure of human PINK1 at a mitochondrial TOM-VDAC array
science.org
Structure of human PINK1 at a mitochondrial TOM-VDAC array
Mutations in the ubiquitin kinase PINK1 cause early onset Parkinson’s Disease, but how PINK1 is stabilized at depolarized mitochondrial translocase complexes has remained poorly understood. We determi...
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Khalimonchuk Lab @mitocrue.bsky.social · 11/03/2025
Heterooligomerization drives structural plasticity of eukaryotic peroxiredoxins
biorxiv.org
Heterooligomerization drives structural plasticity of eukaryotic peroxiredoxins
Peroxiredoxins are highly conserved thiol peroxidases essential for peroxide detoxification, redox signaling, and chaperone activity. Prx1/AhpC-type peroxiredoxins are found throughout the eukaryotic ...
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Khalimonchuk Lab @mitocrue.bsky.social · 10/03/2025
Engineering mtDNA deletions by reconstituting end joining in human mitochondria
cell.com
Engineering mtDNA deletions by reconstituting end joining in human mitochondria
Combined expression of a mitochondrially targeted endonuclease and end-joining machinery enables formation of mtDNA deletions with a broad range of heteroplasmy.
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Khalimonchuk Lab @mitocrue.bsky.social · 05/03/2025
Structure of mitochondrial pyruvate carrier and its inhibition mechanism
nature.com
Structure of mitochondrial pyruvate carrier and its inhibition mechanism - Nature
Structural findings define the architecture of the mitochondrial pyruvate carrier, delineate its substrate-binding site and translocation pathway, and reveal its major conformational states, providing...
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Reposted by Khalimonchuk Lab
Christian Frezza @frezzalab.bsky.social · 27/02/2025
MARIGOLD and MitoCIAO, two searchable compendia to visualize and functionalize protein complexes during mitochondrial remodeling: Cell Metabolism www.cell.com/cell-metabol...
cell.com
MARIGOLD and MitoCIAO, two searchable compendia to visualize and functionalize protein complexes during mitochondrial remodeling
Rigoni et al. use complexomic to develop two online-available tools, MARIGOLD and MitoCIAO, mapping mitochondrial protein interactions during membrane remodeling. MARIGOLD provides “digital western bl...
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Khalimonchuk Lab @mitocrue.bsky.social · 24/02/2025
My study section meeting just got postponed, which means ~100 ESI MIRA applications won’t be reviewed in a timely manner… One of the many postponed meetings now, but it just breaks my heart and makes me feel super bad for all the junior faculty out there. What a shame.
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Khalimonchuk Lab @mitocrue.bsky.social · 20/02/2025
In some positive news - truly honored to be named a 2025 ASBMB Fellow. Humbled to be a part of this amazing cohort of researchers. -ok
asbmb.org
ASBMB names 2025 fellows
American Society for Biochemistry and Molecular Biology honors 24 members for their service to the society and accomplishments in research, education, mentorship, diversity and inclusion and advocacy.
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Reposted by Khalimonchuk Lab
Jonathan Friedman @labfriedman.bsky.social · 19/02/2025
Some good news (and fresh science) to break things up! Our work identifying a subpopulation of compositionally unique mitochondria that localize to filopodia and promote cell migration is now @currentbiology.bsky.social! Led by fantastic @madeleinempavey.bsky.social! www.cell.com/current-biol...
cell.com
Compositionally unique mitochondria in filopodia support cellular migration
Marlar-Pavey et al. determine that a subpopulation of compositionally unique mitochondria, METEORs, dynamically localize to filopodia. Loss of mitochondrial targeting to filopodia correlates with a re...
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Khalimonchuk Lab @mitocrue.bsky.social · 19/02/2025
Dual regulation of mitochondrial fusion by Parkin–PINK1 and OMA1
nature.com
Dual regulation of mitochondrial fusion by Parkin–PINK1 and OMA1 - Nature
We find that, in mice, although the individual loss of Parkin or OMA1 does not affect mitochondrial integrity, their combined loss results in small body size, low locomotor activity, premature death, ...
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Khalimonchuk Lab @mitocrue.bsky.social · 18/02/2025
HypoxyStat, a small-molecule form of hypoxia therapy that increases oxygen-hemoglobin affinity
cell.com
HypoxyStat, a small-molecule form of hypoxia therapy that increases oxygen-hemoglobin affinity
A small molecule that increases oxygen-hemoglobin affinity was shown to prevent and reverse pathology in a mouse model of mitochondrial disease, thereby enabling a practical form of hypoxia therapy.
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Reposted by Khalimonchuk Lab
Osman Lab @osman-lab.bsky.social · 16/02/2025
🚀 Excited to share our latest work on Mrx6 and mtDNA copy number regulation, now available on @biorxivpreprint.bsky.social ! We uncover how Mrx6 and Mam33 interact with the Lon protease Pim1 to control substrate degradation. 🔬 Check it out here: www.biorxiv.org/content/10.1... #mitochondria #mtDNA
biorxiv.org
Mrx6 binds the Lon protease Pim1 N-terminal domain to confer selective substrate specificity and regulate mtDNA copy number
Mitochondrial DNA (mtDNA) copy number regulation remains incompletely understood, despite its importance in cellular function. In Saccharomyces cerevisiae, Mrx6 belongs to the Pet20-domain-containing ...
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Reposted by Khalimonchuk Lab
Carl T. Bergstrom @carlbergstrom.com · 08/02/2025
1. Today the NIH director issued a new directive slashing overhead rates to 15%. I want to provide some context on what that means and why it matters. grants.nih.gov/grants/guide...
grants.nih.gov
NOT-OD-25-068: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates
NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NOT-OD-25-068. OD
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