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kausthubh.bsky.social

@kausthubh.bsky.social
193 followers 374 following 17 posts

(he/him) PhD student at EMBL Heidelberg | phylogenetics | evolutionary cell biology | Views personal

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Maria Hondele @mariahondele.bsky.social · 18/09/2026
The heatwave is finally over - just in time for our “Frosty Foci” to finally come online! ❄️🦠 We found that E. coli builds a transient nucleolus-like ribosome biogenesis compartment during cold adaptation, when RNA (mis)folding makes ribosome biogenesis challenging.
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Jack Stilgoe @jackstilgoe.bsky.social · 18/05/2026
The % of scientists who think public engagement makes science better has gone up from 21% in 2006 to 64% now. That's huge.
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Andrew Roger @andrewjroger.bsky.social · 06/05/2026
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models academic.oup.com/mbe/article/...
academic.oup.com
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models
Abstract. IQ-TREE (https://iqtree.github.io/) is a widely used open-source software tool for efficiently inferring phylogenetic trees under maximum likelih
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Daniel Lüdke @danielluedke.bsky.social · 06/05/2026
Some predictions are high-confidence. These go to eleven! Huge congrats to the whole team ❤️ Such a privilege to work with you all.
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AmirAli Toghani @amiralito.bsky.social · 05/05/2026
Protein structure prediction changed biology. Protein assembly discovery is next. We present SNI (Structural Novelty Index), a scalable framework for finding new protein complexes. We used it to uncover an unexpected resistosome assembly: 11-mer. 🧵👇🏻 biorxiv.org/content/10.6...
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Schnittger Lab @schnittger-lab.bsky.social · 06/05/2026
Finally, here it is: after 12 years, and driven by the incredible hard work and innovation of two Ph.D. students, Bingyan Hu and Maria Prusicki, with biomathematical support from Katarina Stahlmann (UKE) — "A cytological framework of female meiosis in Arabidopsis". academic.oup.com/plcell/artic...
academic.oup.com
A cytological framework of female meiosis in Arabidopsis
Live-cell imaging reveals characteristic cytological stages of female meiosis in Arabidopsis and allows an assessment of their durations.
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Hoyaboya @hoyaboya1.bsky.social · 06/05/2026
Saleh et al. (2026-05, Lethaia)(オープンアクセス open access) 「フランス,オルドビス紀前期のCabrières Biotaから得られた高緯度生態系に関する新たなデータ」 New data on high-latitude ecosystems from the Early Ordovician Cabrières Biota, France doi.org/10.18261/let...
Joschua Knüppe (in Saleh et al., 2026), CC BY 4.0, https://doi.org/10.18261/let.59.2.0
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Rabern Simmons, PhD🔬💧🍄 @drrabern.bsky.social · 04/05/2026
🔬💧🍄🌏🌍🌎 Chytrids are everywhere: diatom-parasitic #chytrids dominate pelagic fungal communities across 50 reservoirs. doi.org/10.1007/s113...
doi.org
Chytrids are everywhere: diatom-parasitic chytrids dominate pelagic fungal communities across 50 reservoirs - Landscape and Ecological Engineering
Aquatic fungi play an important role in the material cycling, yet the factors structuring the spatial distribution of aquatic fungal communities remain poorly understood. In this study, we investigated fungal community composition across 50 reservoirs in Japan using DNA metabarcoding. Chytridiomycota (chytrids) dominated fungal communities in many reservoirs and constituted a core component of fungal assemblage. Notably, diatom-parasitic taxa were detected in all reservoirs, indicating their ubiquitous occurrence. In contrast, rare and transient components were mainly composed of Dikarya (Ascomycota and Basidiomycota), likely influenced by stochastic processes, such as episodic inputs from terrestrial habitats. Variation partitioning showed that environmental, spatial, and host-related factors each explained only a small proportion of variation in both the total fungal community and chytrids, with spatial effects being slightly stronger for total fungi, whereas environmental and host-related factors contributed relatively more to chytrid communities. Our results indicate reservoir fungal communities are characterized by a ubiquitous chytrid core and substantial unexplained variation reflecting stochastic and within-lake processes.
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Tera Levin @teralevin.bsky.social · 02/05/2026
Bacterial immune proteins have repeatedly evolved to become parts of eukaryotic immunity. But how? Our new preprint uncovers a recent horizontal transfer event & shows how eukaryotes co-opted a toxic bacterial immune protein 🦠🧪🧵 1/
Microscopy image showing yeast cells expressing a fluorescently tagged version of the amoeba TirC protein. TirC forms filaments that span the yeast cells.
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Nico Schramma @nicoschramma.bsky.social · 04/05/2026
Sign up for the Dutch Society for Cell Biology meeting May 21st in Amsterdam dutch-society-cell-biology.nl with speakers: @buzzbaum.bsky.social Lucas Pelkman Geert van den Bogaart @leilaakkari.bsky.social Michiel Pegtel @joachimgoedhart.bsky.social @seemagrewal.bsky.social Martijn Nolte (ZonMW)
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EMBL Events @events.embl.org · 30/04/2026
Are you planning to join #EMBLPlanktonDiscoveries? We've secured more travel grants and fee waivers for on-site and virtual participants. Find more details on the website under "Practical information": s.embl.org/pgo26-01-bl Submit your abstract by 26 May Date: 1–4 Sep EMBL Heidelberg and Virtual
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Daniel Brady Mills @danbmills.bsky.social · 30/04/2026
Had fun writing this with @glyptocrinus.bsky.social! If multicellularity is ancient and so easy to achieve, then what is it exactly that makes few the multicellular clades that dominate ecosystems today -- plants, animals, fungi -- stand out?
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Shamphavi Sivabalasarma @sshamphavi.bsky.social · 27/04/2026
You ever wondered whether your favorite archaeon has a surface structure or even an archaellum? Say no more! We screened for the presence of archaeal TFF machineries in all archaeal phyla and help you with that! Check it out here: www.biorxiv.org/content/10.6... (1/n)
biorxiv.org
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Courtney Stairs @cstairs.bsky.social · 24/04/2026
Check out the draft program for the Comparative Genomics of Unicellular Eukaryotes meeting! Want to attend? Are you a speaker? Registration is open until May 4, please do this sooner rather than later to help us in the organization of the meeting comparativegenomics2026.com/program/
comparativegenomics2026.com
Program – CGUE 2026
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Kars @karoshimyriad.bsky.social · 24/04/2026
The University of Copenhagen has decoded various ancient Middle Eastern cuneiform tablets. These artifacts can be over 4,000 years old. The texts include details of anti-witchcraft rituals and suggestions that Gilgamesh may have actually existed. scitechdaily.com/4000-year-ol...
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Max Telford @maxjtelford.bsky.social · 23/04/2026
The Tree of Life available as a paperback today. bit.ly/41Mq7jp Breezy, scholarly, whimsical, rigorous + companionable guide to our family history. TLS Erudite, highly informed, frequently amusing.. compelling + memorable. Science Enjoyable + ambitious. An exhilarating cartographic journey. WSJ
Cover of the paperback version of The Tree of Life by Max Telford
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Harmit Singh Malik @harmitmalik.bsky.social · 23/04/2026
Beautiful creative work and a great 🧵 Kudos to all involved in this nice work 🧪
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joe dobbs @joedobbs.bsky.social · 22/04/2026
Big news for correlative cryogenic SMLM/ET! With my colleague Soheil, we (Mahamid and @jonasries.bsky.social labs) indicate lamella-specific illumination can allow 500-1500x higher laser intensities, opening massive new possibilities for correlative imaging #teamtomo www.biorxiv.org/content/10.6...
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Holly Moeller @mixotrophe.bsky.social · 23/04/2026
Another excellent talk by @fmikus.bsky.social: an extraordinarily beautifully illustrated pitch for expansion microscopy, improving all the time thanks to Felix & team's efforts with antibodies, etc. #ISOP2026
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Deepa Rajan, PhD @deeparajan.bsky.social · 23/04/2026
How can a single cell learn without a brain? We explore this in my paper with @wallaceucsf.bsky.social! We discovered that single cells may learn using molecules similar to those that animal brains use to learn, like CaMKII. Cells can also propagate memory states to their progeny!
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 23/04/2026
A single-stranded DNA virus replicates in the mitochondria of a marine oomycete www.biorxiv.org/content/10.64898/20…
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Mart Krupovic @mkrupovic.bsky.social · 22/04/2026
"The selfish ribosome" paper is now published in @plosbiology.org . Have a look! Many thanks to the editors and reviewers! doi.org/10.1371/jour...
journals.plos.org
The selfish ribosome
In this Essay, the evolution of life is construed as a ribosomal takeover, whereby the ribosome evolved to consume most of the cell’s resources, while other cellular componentry ensured the propagatio...
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EMBL @embl.org · 22/04/2026
Meet Renato Alves, Senior Bioinformatics Community Manager at EMBL Heidelberg. Renato helps scientists with their computational analysis by providing training & maintaining the research infrastructure. He also enjoys night hikes & stargazing 🔭🌠, a hobby that led to creating EMBL's Astronomy Club.
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Paul & Virginie - Centriole Lab @centriolelab.bsky.social · 22/04/2026
Day 2 of the EMBO U-ExM Workshop at EMBL Heidelberg #EMBOExM. Gels are ready and expanding nicely! We also had a lively poster session and inspiring talks from @sabsalon.bsky.social and @gautamdey.bsky.social. A very engaged group, great to see such thoughtful discussions around expansion microscopy
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Arthur Charles-Orszag @acharlesorszag.bsky.social · 20/04/2026
🚨Hear, hear, fellow microbial cell biologists!🚨 🦠 Bacterial and Archaeal Cell Biology will be represented again at this year’s CELL BIO (ASCB-EMBO) meeting! The deadline to be considered for a talk in our Minisymposium is June 9. Help us spread the word! www.ascb.org/cellbio2026/
ascb.org
Cell Bio 2023-An ASCB|EMBO Meeting
Network, learn, and collaborate with top cell biologists from around the globe.
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 21/04/2026
Our #UExM efforts with @gautamdey.bsky.social & @moorefound.bsky.social featured in @nature.com this month. Beyond the #science, every image is a thing of beauty. I think a world-tour exhibition has to happen at one point. #Expansion #Microscopy
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Felix Mikus @fmikus.bsky.social · 21/04/2026
Our ExM Atlas of eukaryotes is moving along with more and more images coming in - some featured in nature last month! Culture we’re provided by @ccapoban.bsky.social & Julius Lukeš during visits last year www.nature.com/immersive/d4...
nature.com
See the intricate worlds of parasites and algae — March’s best science images
The month’s sharpest science shots, selected by Nature’s photo team.
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Zebrafish Rock! @zebrafishrock.bsky.social · 20/04/2026
“Here, we generated a comprehensive transcriptomic atlas of early embryogenesis from 61 animal species, spanning 13 phyla. By applying a unified computational framework, we systematically inferred the timing of ZGA across species.” This is a big one from @mirimiam.bsky.social et al. 🔥🧪
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Philip Ball @philipcball.bsky.social · 18/04/2026
Feels like this paper on protein-templated DNA synthesis by a natural enzyme warrants some comment. So here's a 🧵. /1 www.science.org/doi/10.1126/...
science.org
Science | AAAS
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Philip Ball @philipcball.bsky.social · 20/04/2026
I suspect we only get so invested in whether the Central Dogma is broken or not because Crick called it that. If it had been "the principle of protein synthesis" or the "rules of transcription & translation" or something, it would seem less of a big deal. Remember, it's not a "dogma" at all.
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Society for Molecular Biology and Evolution @official-smbe.bsky.social · 20/04/2026
SMBE Call for 2028 Regional Meeting 🌍 European proposals SMBE is calling for proposals for meetings and actions to be held Jan 1 - Dec 31 2028, in Europe. 🗓️ Deadline: May 15, 2026 📨 Proposal submission: members.smbe.org/membersurvey/Fill/P3R69Cbp ℹ️ More information: smbe@am.kwglobal.com #society
Call for Proposals: 2028 SMBE Regional Meetings, Europe
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Manuel Irimia @mirimiam.bsky.social · 20/04/2026
Thrilled to present our comparative study on the evolution of zygotic genome activation (ZGA)!! 🥚🧬 Amazing PhD work of @campobes.bsky.social together with @fedemantica.bsky.social and many collaborators! @melisupf.bsky.social @crg.eu. Thread below 1/15 www.biorxiv.org/content/10.6...
biorxiv.org
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Systematics Association @systassn.bsky.social · 20/04/2026
Join us and our fellow European systematics associations in Uppsala, Sweden for the 4th BioSyst.EU meeting! Dates: August 17-19, 2026 Abstract submission and early bird deadline: May 31st Registration deadline: July 17th Details: www.trippus.net/BioSyst2026 We hope to see there! #BioSystEU2026
trippus.net
BioSyst.EU 2026
A three-day conference celebrating European systematics and biodiversity research at its origin
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Stella Hurtley @smhsci.bsky.social · 17/04/2026
Out now in @science.org Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape | Science www.science.org/doi/10.1126/...
science.org
Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape
Bacteria, like eukaryotes, use conserved cytoskeletal systems for intracellular organization. The plasmid-encoded ParMRC system forms actin-like filaments that segregate low–copy number plasmids. In m...
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Nels Elde @elearlybird.bsky.social · 17/04/2026
Biologists Confirm Not Much Evolution Happened Today — theonion.com/biologists-c...
theonion.com
Biologists Confirm Not Much Evolution Happened Today
STANFORD, CA—Calling it a “pretty slow one” as far as natural selection and genetic drift were concerned, biologists from Stanford University confirmed Tuesday that not much evolution happened today. ...
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Martin Loose @nartimsoole.bsky.social · 16/04/2026
Now out in its final form! www.science.org/doi/10.1126/...
science.org
Science | AAAS
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Alejandro Montenegro @aemonten.bsky.social · 17/04/2026
I'm looking for #NewPIs (<3 years as lab heads) in the gene regulation/functional genomics space. If you are one or know one, please comment below! 🧪
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Harmit Singh Malik @harmitmalik.bsky.social · 16/04/2026
@hhmi-science.bsky.social's #FreemanHrabowski Scholars Program offers early career faculty up to $10M over 10 yrs, plus salary & benefits Stable, sustained support can transform your career: Senior Postdoc? This year's competition has a program for you too. Applications open 11/3! bit.ly/4vhC0LA
bit.ly
Early Career Faculty Program | Freeman Hrabowski Scholars | HHMI
The Freeman Hrabowski Scholars Program offers comprehensive support to outstanding early career faculty committed to scientific excellence in their own research, and to fostering labs that expand the ...
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Hoyaboya @hoyaboya1.bsky.social · 17/04/2026
Godoy et al. (2026-04, Journal of Vertebrate Paleontology)(オープンアクセス open access) 「系統解析における再現性の危機」 The reproducibility crisis in phylogenetic analyses doi.org/10.1080/0272...
doi.org
The reproducibility crisis in phylogenetic analyses
Published in Journal of Vertebrate Paleontology (Ahead of Print, 2026)
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kausthubh.bsky.social @kausthubh.bsky.social · 17/04/2026
After several trials (aka delays from my end), this article on EMBL's efforts at public outreach is public 🎉 I has a lot of fun interviewing @samuelhorsfield.bsky.social for this piece! I learnt a lot about #scicomm and how fulfilling it is to talk to curious kids about biology. Pls read & share 🙇‍♂️
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Philip Ball @philipcball.bsky.social · 17/04/2026
I reviewed On the Future of Species by Adrian Woolfson for @thelancet.com. Adrian has now responded to my review here. www.thelancet.com/journals/lan...
thelancet.com
On the computability of biological machines
In the book Natural Theology (1802), the English philosopher and theologian William Paley argued that the complexity of an organism, similar to that of a watch, implied the handiwork of a designer.1 H...
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Andrew Roger @andrewjroger.bsky.social · 18/03/2026
So you are using IQ-TREE to estimate a tree for "deep time" phylogenetics using amino acid alignments. There is a lot of confusion about how to test model fit. Here are some suggestions.
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Gautam Dey @gautamdey.bsky.social · 26/03/2026
What’s better than seeing your paper in print? Sharing the table of contents with @thibautbrunet.bsky.social @maxhaase.bsky.social @pontus-skoglund.bsky.social 🤩 @nature.com @helsenjana.bsky.social @gsherloc.bsky.social @kausthubh.bsky.social
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Carl Quintanilla @carlquintanilla.bsky.social · 27/02/2026
Cover of The Lancet: @thelancet.com www.thelancet.com/journals/lan...
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Hajk-Georg Drost @hajkdrost.bsky.social · 19/02/2026
Does hidden protein biology live in the suboptimal alignment space? When we align two divergent proteins, we usually trust a single optimal alignment. 🧬 But what if the real structural signal lies in the space of near-optimal solutions? With EMERALD-UI you can unfold this perspective.
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Casey Dunn @caseywdunn.bsky.social · 09/01/2026
Our eLetter github.com/caseywdunn/s... responding to a recent Science paper was just posted. The paper found more genes with consistent support for sponge-sister than ctenophore-sister. We found several technical issues that, when corrected, reverse the conclusions and recover ctenophore-sister.
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mrosjac.bsky.social @mrosjac.bsky.social · 26/11/2025
Just uploaded our new preprint to @ecoevorxiv.bsky.social Multinucleate life really is everywhere...from deep sea forams to slime molds, intracellular parasites, and beyond. 🚀 We explore how scaling, ecology, & evolution intersect when many nuclei share a single cytoplasm. doi.org/10.32942/X2M...
doi.org
Plasticity and scaling through multinucleation: a key adaptation to challenging environments
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Jana Helsen @helsenjana.bsky.social · 26/11/2025
Curious about how this story came to be (we never planned to study centromeres!)? Here’s a glimpse behind the scenes of how a naive method to count chromosomes unlocked the rules behind centromere evolution. P.S. There are cartoons! 👉 tinyurl.com/4rz4ve6u
tinyurl.com
Counting Chromosomes: The Simple Idea That Unlocked the Rules Behind Centromere Evolution
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Jana Helsen @helsenjana.bsky.social · 26/11/2025
PCAn, our point centromere annotation tool 🔍 was also updated! Try it out with your own genome assemblies and let us know what you think! 👉 github.com/JHelsen/point-centromere-detection
github.com
GitHub - JHelsen/point-centromere-detection: This repository contains all the instructions and code required to perform the analyses used in this study - https://www.biorxiv.org/content/10.1101/2025.0...
This repository contains all the instructions and code required to perform the analyses used in this study - https://www.biorxiv.org/content/10.1101/2025.01.16.633479v1 - JHelsen/point-centromere-d...
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