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AmirAli Toghani

@amiralito.bsky.social
1.3K followers 1K following 44 posts

Biologist @thesainsburylab.bsky.social. Currently doing a PhD with @kamounlab.bsky.social Curious about plant immune receptors, molecular evolution, and other stuff. 🌿💻 #evoMPMI Find out more here: amiralito.github.io

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Reposted by AmirAli Toghani
Sophien Kamoun @kamounlab.bsky.social · 27/09/2026
I just published: How do we recognize world-class science? Not by the journal it appeared in What I told early-career researchers about prediction, rigour, failure, priors — and the tyranny of bar graphs. kamounlab.medium.com/how-do-we-re...
kamounlab.medium.com
How do we recognize world-class science? Not by the journal it appeared in
What I told early-career researchers about prediction, rigour, failure, priors — and the tyranny of bar graphs.
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Sophien Kamoun @kamounlab.bsky.social · 22/09/2026
Two seemingly unrelated sides of our lab collided today in the AWESOME new Angiosperm Phylogeny Group system poster: flowers 🌸 and phylogenomics 🧬 Need a new genome? Just pick up the phone and “dial-a-genome” 📞🧬 @getgenome.bsky.social www.tudelft.nl/en/hortus-bo...
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Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Nick Talbot @talbotlabtsl.bsky.social · 14/09/2026
Latest preprint from our group. We found the Bip1 transcription factor is phosphorylated in a Pmk1-dependent manner & with Mst12 co-regulates appressorium-specific functions, as well as acting on genes associated with invasive growth. @camilla-moli.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
A Pmk1-Regulated Mst12-Bip1 Network Coordinates Appressorium Function, Effector Deployment, and Invasive Growth by Magnaporthe oryzae
To cause rice blast disease, the filamentous fungus Magnaporthe oryzae develops a specialised infection cell called an appressorium, which generates enormous turgor to breach the rice leaf cuticle. Al...
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Reposted by AmirAli Toghani
Camilla Molinari @camilla-moli.bsky.social · 14/09/2026
Excited to share this pre-print from my PhD work! We explore a Pmk1-Mst12-Bip1 network required for appressorium-mediated infection by the blast fungus 🌾 www.biorxiv.org/content/10.6... Thread 👇
biorxiv.org
A Pmk1-Regulated Mst12-Bip1 Network Coordinates Appressorium Function, Effector Deployment, and Invasive Growth by Magnaporthe oryzae
To cause rice blast disease, the filamentous fungus Magnaporthe oryzae develops a specialised infection cell called an appressorium, which generates enormous turgor to breach the rice leaf cuticle. Al...
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Reposted by AmirAli Toghani
Sophien Kamoun @kamounlab.bsky.social · 14/09/2026
We just published: Fold on Tight — 10 lessons on AI structure prediction Andy Posbe @adnroide.bsky.social turned our ten lessons on AI structure prediction into a thread. Here it is, one lesson at a time. kamounlab.medium.com/fold-on-tigh...
kamounlab.medium.com
Fold on Tight — 10 lessons on AI structure prediction
Andy Posbe turned our ten lessons on AI structure prediction into a thread. Here it is, one lesson at a time.
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Andy Posbe @adnroide.bsky.social · 11/09/2026
No one remembers authorising this firmware update
Five researchers hold freshly printed immune receptor structures while the office Ricoh continues production, despite nobody remembering authorising this feature.
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Jack Rhodes @jackrhodes.bsky.social · 10/09/2026
An embryo-derived peptide signal directs endosperm polarity in Arabidopsis
science.org
An embryo-derived peptide signal directs endosperm polarity in Arabidopsis
Angiosperm seed formation requires the coordinated development of the products of double fertilization—the embryo and the endosperm. The endosperm mediates efficient nutrient transfer from surrounding...
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Reposted by AmirAli Toghani
Alex McClelland @alexjmcclelland.bsky.social · 11/09/2026
Very pleased to have contributed to this concise, digestible overview of AI structure prediction! I think this is a great resource for newbies and experienced AlphaFold users alike. Happy Folding!
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Remco Stam @rstam.bsky.social · 11/09/2026
New preprint! There have been quite a few papers about RLP and RLK receptors, but none of them have a truly reproducible annotation pipeline (including my own...)... We finally made such a pipeline and look more systematically at RLPs within tomato. www.biorxiv.org/content/10.6...
biorxiv.org
PlantLRR-PRR:A Reproducible Annotation Pipeline Reveals Contrasting Evolution of Developmental and Defense Receptor-Like Proteins in Tomato
Plants perceive external and internal signals via receptors to modulate their growth, development, and defenses. Leucine-rich-repeat receptor-like-kinase (RLKs) and receptor-like-proteins (RLPs) are t...
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Buzz Baum @buzzbaum.bsky.social · 11/09/2026
If you thought you understood how one cell becomes two (and imagined studying the problem using an organism that lives in deep sea volcanic vents was impossible), read Florian’s paper and think again!
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Andy Posbe @adnroide.bsky.social · 10/09/2026
Excited to share Fold on Tight! 🎉 We distil recent advances in plant immunity into 10 lessons for using AI structure prediction critically and effectively, in plants and beyond. 📝 zenodo.org/records/2210...
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Sophien Kamoun @kamounlab.bsky.social · 10/09/2026
You saw the poster—now hear the talk! Mauricio Contreras @mpcontreras.bsky.social with Maian @maigarro.bsky.social and AmirAli @amiralito.bsky.social reveal the hidden handshake between sensors and helpers in the NRC network 🤝🌱 #BSPP26 #PPATH2026
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Josh Bennett @joshwbennett.bsky.social · 07/08/2026
I am really excited to share the first chapter of my PhD, where we characterise a genetically linked NLR/MLKL pair underpinning the Rwt3 resistance locus in wheat! With yet another KFP involved in monocot immunity 🌾 www.biorxiv.org/content/10.6...
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 07/08/2026
A wheat immune receptor pair executes cell death through a helper MLKL www.biorxiv.org/content/10.64898/20…
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Isabel Monte @isabelmonte.bsky.social · 17/07/2026
Deadline extended 📢 Submit your abstract for the #PPRM2026 by July 29th! Check our fantastic lineup of invited speakers and come join us discuss all things #plant peptide receptors 🌱 Please spread the word and see you in Freising (Germany) from September 14 to 16 😊 www.events.tum.de/frontend/ind...
Flyer of the Plant Peptide Receptor Meeting 2026 (September 14-16, Freising, Germany) showing cell-surface receptors on the plasma membrane against a background showing Freising. The QR code will lead to the PPRM2026 website where you can register and submit your abstract by July 29th.
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 10/07/2026
Computational design of de novo integrated domains enables rational control of pathogen effector recognition in plant NLR immune receptors. www.biorxiv.org/content/10.64898/20…
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 24/06/2026
Our latest work on immune receptor engineering for enhanced pathogen recognition is out in @theplantcell.bsky.social academic.oup.com/plcell/artic... #NLRs #Effectors #Exo70
academic.oup.com
Engineering an Exo70 integrated domain of a barley NLR for improved blast resistance
Engineering the barley NLR RGH2 enhances recognition of blast pathogen effectors from rice and wheat, leading to improved disease resistance.
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Mauricio Contreras @mpcontreras.bsky.social · 09/06/2026
As seen on @biorxivpreprint.bsky.social: our story on how the dreaded late blight pathogen hijacks a helper NLR pathway is now out in its final form! 🎉 Meet AVRcap1b: the two-faced effector 🧵👇 www.science.org/doi/10.1126/...
science.org
A potato late blight pathogen effector interacts with ENTH-domain protein TOL9a and an activated helper NLR to suppress immunity
A plant pathogen effector suppresses an activated helper NLR via a host ENTH domain–containing protein, NbTOL9a.
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Sophien Kamoun @kamounlab.bsky.social · 05/06/2026
You saw them first on @bioRxiv. Now they’re out in print—back-to-back. Meet AVRcap1b: the two-faced immunosuppressor from the potato blight pathogen Phytophthora infestans. www.science.org/doi/10.1126/...
science.org
A potato late blight pathogen effector interacts with ENTH-domain protein TOL9a and an activated helper NLR to suppress immunity
A plant pathogen effector suppresses an activated helper NLR via a host ENTH domain–containing protein, NbTOL9a.
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Marion Clavel @thevirusmc.bsky.social · 29/05/2026
Our work is out now! (www.science.org/doi/10.1126/...). We discover a selective autophagy pathway that protects plants from the mess caused by RNA viruses. Intrigued? Follow the spaghetti trail for a summary of our findings🧵-->
science.org
Selective autophagy fine-tunes plant immunity to promote cell survival during viral infection
RNA viruses co-opt host endomembranes to form replication complexes, often triggering cellular stress and immune responses. Here, we show that Arabidopsis thaliana activates selective autophagy to res...
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Elenor Kennedy @ebkennedy.bsky.social · 22/05/2026
@khongsamchia.bsky.social Extremely excited to share the first pre-print from my PhD project in the Carella lab, co-first authored with @khongsamchia.bsky.social 🎉 (Thread below ⬇️) www.biorxiv.org/content/10.6... Huge thanks to all co-authors and the #CarellaCapybaras for all the support 😊
biorxiv.org
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AmirAli Toghani @amiralito.bsky.social · 20/05/2026
Started off as convergent observations in the lab with Mau and led to one of my favorite works so far! Gotta love molecular evolution and receptor biology 😊🧬💻 Huge effort from @maigarro.bsky.social @mpcontreras.bsky.social for pushing this together to the end. 🤘🏻
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Mauricio Contreras @mpcontreras.bsky.social · 20/05/2026
Huge team effort together with the two legends @amiralito.bsky.social & Maián! Thanks to Raoul Frijters from @rijkzwaan.bsky.social for inspiration and to @kamounlab.bsky.social for the constant support. It was a pleasure to put this story together! Check it out now👇 www.biorxiv.org/content/10.6...
biorxiv.org
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Mauricio Contreras @mpcontreras.bsky.social · 20/05/2026
Check out our updated activation-and-release model. This one image condenses over 10 years of work from many legendary @kamounlab.bsky.social members 🤯 Big shoutout to Chih-Hang, @tolgaboz.bsky.social, Lida, Aki, Selvaraj, @jmadhuprakash.bsky.social, @hsuanpai.bsky.social, Ben and many more!
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Sophien Kamoun @kamounlab.bsky.social · 20/05/2026
This is the culmination of >10 years of work by generations of students and postdocs. Many false starts. And we know that others have tried too. Structural insights into the activate-and-release mechanism of NLR activation. And we can engineer it too! Kudos Team 🙏🔥
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Mauricio Contreras @mpcontreras.bsky.social · 20/05/2026
Check out our latest work! AlphaFold 3 revealed a transient immune receptor complex that eluded biochemical studies for almost a decade 🤯 We describe a conserved structural logic underlying sensor–helper communication in an NLR immune receptor network 🧵👇
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 19/05/2026
A conserved structural logic underlies sensor-helper NLR communication in the NRC immune receptor network www.biorxiv.org/content/10.64898/20…
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 13/05/2026
Excited to have started my group @zmbp-tuebingen.bsky.social through the @dfg.de Emmy Noether program. In this project we will be looking at the mechanisms of host invasion by fungal pathogens 🍄🌱 Check it out and drop me a line if you are interested! uni-tuebingen.de/en/universit...
uni-tuebingen.de
New Emmy Noether research group on fungal infections in plants
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Andrew Roger @andrewjroger.bsky.social · 06/05/2026
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models academic.oup.com/mbe/article/...
academic.oup.com
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models
Abstract. IQ-TREE (https://iqtree.github.io/) is a widely used open-source software tool for efficiently inferring phylogenetic trees under maximum likelih
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Larry Hunter @proflhunter.bsky.social · 06/05/2026
Fun thread. Cool work, and make sure to read all the way to the end!
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The Sainsbury Laboratory @thesainsburylab.bsky.social · 06/05/2026
New Preprint in collaboration with GoogleDeepMind: AI-guided discovery of atypical protein assemblies The @kamounlab.bsky.social discovered an 11-protomer complex thanks to the Structural Novelty Index , a new way to use AlphaFold to find protein assemblies that break the pattern.
tsl.ac.uk
AI-guided discovery of atypical protein assemblies
Artificial intelligence (AI) systems such as AlphaFold have transformed structural biology by enabling accurate prediction of protein structures. However, their capacity to uncover new classes of…
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AmirAli Toghani @amiralito.bsky.social · 06/05/2026
Breaking the Pattern with AlphaFold: Introducing the Structural Novelty Index by @KamounLab medium.com/p/breaking-t...
medium.com
Breaking the Pattern with AlphaFold: Introducing the Structural Novelty Index
The AI system AlphaFold has transformed how we predict protein structures. But sometimes the most interesting discoveries come from asking…
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Reposted by AmirAli Toghani
Daniel Lüdke @danielluedke.bsky.social · 06/05/2026
Some predictions are high-confidence. These go to eleven! Huge congrats to the whole team ❤️ Such a privilege to work with you all.
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Mauricio Contreras @mpcontreras.bsky.social · 05/05/2026
📢 The next @mpmijournal.bsky.social Focus Issue is now open for submissions: "Plant Immune Receptors in the Spotlight" 🌱🔬 Edited by @dinglab.bsky.social @clemmar.bsky.social @marischuster.bsky.social Rich Wilson and myself! Submit your best work by 31/10/26! 👇 apsjournals.apsnet.org/mpmireceptors
apsjournals.apsnet.org
Plant Immune Receptors in the Spotlight
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AmirAli Toghani @amiralito.bsky.social · 05/05/2026
Protein structure prediction changed biology. Protein assembly discovery is next. We present SNI (Structural Novelty Index), a scalable framework for finding new protein complexes. We used it to uncover an unexpected resistosome assembly: 11-mer. 🧵👇🏻 biorxiv.org/content/10.6...
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bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 04/05/2026
AI-guided discovery of atypical protein assemblies www.biorxiv.org/content/10.64898/20…
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Sophien Kamoun @kamounlab.bsky.social · 01/05/2026
Just published: A helper NLR challenges the membrane localisation dogma "Plant NLR immune receptors are astonishingly diverse - functionally and structurally. We have only scratched the surface, and there are many more surprises in store." medium.com/p/a-helper-n...
medium.com
A helper NLR challenges the membrane localisation dogma
PUBLISHED: 30.04.26 | THE SAINSBURY LABORATORY
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Tolga Bozkurt @tolgaboz.bsky.social · 01/05/2026
Final version of our NRG1 MS is out! We uncover a surprising mechanism: the helper NLR NRG1 targets organellar membranes to trigger immunity Great collaborations with @KamounLab, @JiorgosKourelis, @jonathandgjones, @AdamWu9527, and the @Phil_Carella labs! science.org/doi/10.1126/sc…
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Fantin Mesny @mesny.bsky.social · 29/04/2026
🎉 📰 Very happy to share the journal publication of our manuscript "Plant-associated fungi co-opt ancient antimicrobials for host manipulation"! #ScienceAdvancesResearch @science.org @teamthomma.bsky.social www.science.org/doi/10.1126/...
science.org
Plant-associated fungi co-opt ancient antimicrobials for host manipulation
Fungal effectors may have evolved from ancient antimicrobials, shaping plant microbiota and immunity during infection.
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Biochemical Society @biochemsoc.bsky.social · 14/04/2026
As an emerging leader in plant innate immunity, we're thrilled to present Mauricio Contreras with a 2027 Early Career Research Award! Alongside advocating for Open Science and preprint review, Mauricio's "activation-and-release" and "NLR resurrection" models are already referenced worldwide.
Award announcement for Dr. Mauricio P. Contreras from University of Tübingen, Germany, receiving the Early Career Research Award at The Biochemical Society 2027 Awards.
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 13/04/2026
AlphaFold 3 captures oligomeric states and interaction dynamics of MLO ion channels www.biorxiv.org/content/10.64898/20…
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STCmicrobeblog @stcmicrobeblog.bsky.social · 02/02/2026
#ProtistsOnSky no 'swimming' by 𝘝𝘢𝘮𝘱𝘺𝘳𝘦𝘭𝘭𝘢, definitively no 'staying still'. just a relaxed walk towards the lunch...
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The Sainsbury Laboratory @thesainsburylab.bsky.social · 26/01/2026
The Sainsbury Laboratory is delighted to announce that it has received $2 million in funding as part of Google.org's $20 million AI for Science Fund to support organizations focused on cutting-edge AI for science research. @kamounlab.bsky.social @amiralito.bsky.social www.tsl.ac.uk/news/the-sai...
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 11/01/2026
With the new year, is my time to say bye to @gmivienna.bsky.social as I move to @zmbp-tuebingen.bsky.social in Tuebingen. I will start my solo Group Leader career as a Emmy Norther fellow. Thanks to everyone that helped on the way. I will be advertising PhD and Postdoc positions soon, stay tuned!
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Tatsuya Nobori @tatsuyanobori.bsky.social · 15/12/2025
🚨We’re hiring! Please help spread the word! Our lab at @TheSainsburyLab is recruiting a pre-doctoral intern to work on plant immunity research. Ideal for those who are planning to pursue a PhD and seeking research experience. tatsuyanobori.com
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Hugues Renault @huguesrenault.bsky.social · 31/12/2025
Evolution of protein domains and protein domain combinations provides insights into the origin and diversification of land plants www.cell.com/cell-genomic...
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eileen chengyin chow @chowleen.bsky.social · 28/12/2025
A pair of happy hammerhead sharks (ca. 1735 Edo period Japan)
Paintings of hammerhead sharks depicted in the "Oki National Products Illustration Notes". From Japan, Edo Period, ca 1735
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Daniel Yu @danielsyu.bsky.social · 16/12/2025
Excited to share our #plantimmunity preprint on engineering cereal TKPs www.biorxiv.org/content/10.6... A short thread below 👇
biorxiv.org
Engineering plant tandem kinase immune receptors expands effector recognition profiles
Plant intracellular immune receptors are widely deployed in breeding to protect crops from disease. In addition to nucleotide-binding leucine-rich repeat receptors (NLRs), tandem kinase proteins (TKPs...
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mjbanfield.bsky.social @mjbanfield.bsky.social · 16/12/2025
Super-happy sharing my Lab's new work on engineering plant HMA-containing tandem kinase immune receptors. Congrats to all authors (@danielsyu.bsky.social and @njw33.bsky.social on here). Work only possible in collaboration with Soichiro Asuke. See linked paper to follow! bsky.app/profile/bior...
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