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Gautam Dey

@gautamdey.bsky.social
6.8K followers 3.3K following 306 posts

Evolutionary cell biology @EMBL evonuclab.org

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Reposted by Gautam Dey
Ben Engel @cellarchlab.com · 02/10/2026
Nice @jcellsci.bsky.social "at a glance" review about the convergently evolved organizing principles of pyrenoids, chloroplast compartments that enable diverse algae to supercharge #CO2 fixation. BONUS: It comes with a poster for your wall 🖼️. Great work @phaips.vd.st & @manondemulder.bsky.social 🌊🌾🧪
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Dr Hannah M. Rowland @hannahmrowland.bsky.social · 01/10/2026
Hope your day was better than Darwin’s, on this day 165 years ago
I am very poorly today & very stupid & hate everybody &everything.

Charles Darwin
Letter to Charles Lyell
1st October 1861
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Ben Long @botbml.bsky.social · 27/09/2026
Spatial proteomics reveals carboxysome adaptation and mitochondrial proteome in Paulinella chromatophora www.cell.com/current-biol...
cell.com
Spatial proteomics reveals carboxysome adaptation and mitochondrial proteome in Paulinella chromatophora
Using LOPIT-DC-based spatial proteomics, Cadena et al. map the sub-organellar protein landscape of Paulinella chromatophora, a cercozoan with evolutionary-early-stage photosynthetic organelles. They f...
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Maya Voichek @mayavoichek.bsky.social · 24/09/2026
Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7)
AI-generated illustration of the soma-to-germline transmission of retrotransposons described in our work
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Niko Leisch @nikobiota.bsky.social · 25/09/2026
We hiked, we microscoped, we sorted—and we’re excited for more! 🏔️🔬 Week 1 of exploring alpine microbial life with @sciencesunige.bsky.social , EPFL ALPOLE and EMBL's Mobile Labs, is about to wrap up. First time fieldwork for some of us, sampling & on-site analysis for all.
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Agathe Chaigne @agathechaigne.bsky.social · 24/09/2026
I'm super proud of this review written (mostly) by Zoé Ducarne and @myanhtruong.bsky.social about the extraordinary genomic features of the placenta. Such a crazy organ! journals.biologists.com/dev/article/...
journals.biologists.com
The curious case of the placental genome
Summary: The placenta is the only mammalian organ that harbors a cancer-like genome while remaining functional and healthy. This Review highlights its high mutational load, structural variants, aneupl...
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Cedric Feschotte @cedricfeschotte.bsky.social · 24/09/2026
Thrilled to see this published today! Truly special because we made the initial discovery >15 yrs ago! We found two copies of a human gene called BC200 embedded in a human poxvirus. BC200 blurs the line between gene & transposon—both functional & mutagenic! www.science.org/doi/10.1126/... 🧵1/n
science.org
Escape of the BC200 gene to a human poxvirus reveals its persistent transposition in primates
Transposable elements mobilize within and occasionally between genomes, including from host to virus. We identified two insertions of the human BC200 noncoding RNA gene in the poxvirus molluscum conta...
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Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Gautam Dey @gautamdey.bsky.social · 24/09/2026
Proud to contribute the World’s Hottest Mitotic Spindle™️ to this incredible study @fmikus.bsky.social @dudinlab.bsky.social #ProtistsOnSky
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Earth and Planetary Sciences at ETH Zurich @eth-eaps.bsky.social · 22/09/2026
The Department of Earth and Planetary Sciences at ETH Zurich invites applications for the position of Assistant Professor (Tenure Track) of Earth and Planetary Evolution. ethz.ch/en/the-eth-z... Please apply online. The closing date for applications is 15 December 2026.
ethz.ch
Assistant Professor (Tenure Track) of Earth and Planetary Evolution
The Department of Earth and Planetary Sciences (www.eaps.ethz.ch) at ETH Zurich invites applications for the above-mentioned position.
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Richard Lenski @relenski.bsky.social · 22/09/2026
"Philosophy of Biology: The power of theory in the life sciences" elifesciences.org/articles/112... @zdblount.bsky.social shared this thought-provoking paper with the lab group.
elifesciences.org
Philosophy of Biology: The power of theory in the life sciences
Theory can help address cell and molecular biology’s major challenges, particularly those arising from large omics datasets.
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PLOS Biology @plosbiology.org · 22/09/2026
#TrendingNow | The anatomy of multicellular structures such as #biofilms influences how cells can access resources. This study shows that #bacteria in biofilms divide along oxygen gradients, affecting the physiology and drug susceptibility of biofilm subzones. #ICYMI #MicroSky 🧪 buff.ly/aHITgjp
buff.ly
Cellular arrangement impacts metabolic activity and antibiotic tolerance in Pseudomonas aeruginosa biofilms
Cells must access resources to survive, and the anatomy of multicellular structures influences this access. This study shows that bacteria in biofilms divide along oxygen gradients; their end-to-end…
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 21/09/2026
Congrats to the whole team and collaborators: @gautamdey.bsky.social , @johandecelle.bsky.social , @fmikus.bsky.social, @sciencesunige.bsky.social @embl.org, @moorefound.bsky.social www.lemonde.fr/article-offe...
lemonde.fr
Les eucaryotes unicellulaires, matière noire d’une biodiversité encore méconnue
Invisibles à l’œil nu, ces micro-organismes d’une incommensurable diversité sont essentiels à nos écosystèmes. Pendant longtemps, il a été difficile de les étudier, mais l’essor de nouvelles technique...
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Luis Javier Galindo @luisjagago.bsky.social · 11/09/2026
It was a pleasure to host Karla and Félix from @gautamdey.bsky.social and @dudinlab.bsky.social ! A wonderful week filled with great talks, and microscopy with friends. Thank you for the UExM training you provided to members from different departments across our university. Come back soon!
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 11/09/2026
We wanted to share this asap for everyone to use ! This will remain a #preprint for the time being. We are happy to recieve feedback, hear whether or not ot works in your hands and continue to apply it across #eukaryotes as part of #ExÂME You want to know more : www.dudinlab.com/exame
dudinlab.com
Research
ExÂME is the Expansion Microscopy Atlas of Microbial Eukaryotes, a community-driven project uncovering the hidden cellular architectures of protists and microbial eukaryotes. Supported by the Moore Fo...
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Felix Mikus @fmikus.bsky.social · 11/09/2026
Are you interested in the nuclear envelope and are still lacking a dye for it? Try the lectin concanavalin A in #U-ExM! Together with @baukjeje.bsky.social, @gautamdey.bsky.social and @dudinlab.bsky.social and many collaborators sharing species with us we explored the versatility of this dye
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Caitie McCafferty @computingcaitie.bsky.social · 09/09/2026
I am looking for a lab manager for my group that I will be starting at the @fmiscience.bsky.social in February! We will use in situ structural biology to investigate dynamic ciliary processes. More info here —> bsky.app/profile/comp... #cilia #teamtomo #proteomics #protistsky
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Dr. Lucky Tran @luckytran.com · 09/09/2026
We want clean air and water and a livable climate. Instead we are getting AI to record all of our conversations through a watch.
9to5mac.com
The new Apple Watch will use microphone and other sensors to generate AI recaps of your day - 9to5Mac
Apple will announce the new Apple Watch lineup later today, and Mark Gurman at Bloomberg has the early scoop. He...
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Arnaud Krebs @arnaudkr.bsky.social · 10/09/2026
EMBL QBMM is back this year with an outstanding line-up! Plenty of talks will be selected from submitted abstracts, with emphasis on junior scientists and representation across diverse fields. The abstract deadline is the end of this week, so don’t miss out! www.embl.org/about/info/c...
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Luis Javier Galindo @luisjagago.bsky.social · 04/09/2026
Grateful to my collaborators and friends who made this possible. @deemteam.bsky.social, @multicellgenome.bsky.social, Tom, Dan, @dudinlab.bsky.social, @gautamdey.bsky.social, @rosswaller.bsky.social, @benkinsjenkins.bsky.social, Nick, @varshamathur.bsky.social, @lauraeme.bsky.social, Miguel & more!
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Luis Javier Galindo @luisjagago.bsky.social · 04/09/2026
I am extremely happy to announce that I have been awarded an @erc.europa.eu ERC Starting Grant to lead the ProtistEye project! We will be diving into the function, architecture, and diversity of eye-like structures across different protists to better understand their evolution. Stay tuned for more!
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Thibaut Brunet @thibautbrunet.bsky.social · 02/09/2026
🚨 New preprint alert! 🚨 Choanoflagellates reorganize their global cytoskeletal architecture within seconds to explore confined microspaces. This is the main PhD work of the amazing @maitefreired.bsky.social www.biorxiv.org/content/10.6... A tread 🧵⬇️
biorxiv.org
Rapid repurposing of microvillar content drives a flagellate-to-amoeboid switch in the closest relative of animals
Animal cells extensively remodel their cytoskeleton during differentiation and can notably switch between two major motility modes: flagellum-based swimming and actin-based crawling. We previously sho...
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Flora Vincent @floravincent.bsky.social · 03/09/2026
#ProtistsOnSky
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Gautam Dey @gautamdey.bsky.social · 29/08/2026
Ancient protein families age like fine wines, layering flavour upon flavour over billions of years. Peeling back the layers needs an evolutionary lens: it might turn out the function that made them famous might not be the first or the most important one. Been super fun hashing this out with friends!
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Serge Mostowy @sergemostowylab.bsky.social · 29/08/2026
Septins at the origin? New Opinion piece with @onishilab.bsky.social @wallaceucsf.bsky.social @gautamdey.bsky.social
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Giovanni D’Angelo @giodang.bsky.social · 28/08/2026
Registration is still open for the EPFL Latsis Symposium 2026, "Decoding the Cell: Modeling, Predicting, and Engineering Cellular States." 29–30 Oct, Olympic Museum, Lausanne. Quake, Haniffa, Engelhardt, Liberali, Paluch, Kundaje and more. Abstracts close 15 Sept. latsis2026.epfl.ch/event/1/
latsis2026.epfl.ch
EPFL Latsis Symposium 2026
Join us in Lausanne to connect with the global community shaping the future of cell understanding and engineering.
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Kirsty Wan @micromotility.bsky.social · 17/08/2026
What does a single-celled organism tell us about the origins of complex behaviour? Delighted to see the final version of our paper: Embodied behavioural complexity in a ciliated microorganism out in@natcomms.nature.com (Funded by @erc.europa.eu ERC) doi.org/10.1038/s414... #cilia #protistsonsky
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Janani Durairaj (Jay) @ninjani.bsky.social · 28/08/2026
Some exciting news: I'm joining the University of Lausanne @unil.bsky.social @dbc-unil.bsky.social as an Assistant Professor next month 🎉 My group will work on context-aware deep learning for protein structure, interaction & design. Postdoc and PhD openings coming soon - keep an eye out!
compare, predict, design
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Caitie McCafferty @computingcaitie.bsky.social · 22/06/2026
Happy to finally share that I will be starting my independent group at the @fmiscience.bsky.social in Feb 2027 in a vibrant new environment. We will use integrative in situ structural cell biology methods to investigate ciliary structure and dynamics in several model (and non-model 👀) systems!!
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Yasin Dagdas @plantophagy.bsky.social · 27/08/2026
#enper2026 keynote talk by @gautamdey.bsky.social from @embl.org on evolutionary cell biology
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Gautam Dey @gautamdey.bsky.social · 28/08/2026
Thank you for the invitation - and this incredible hand-crafted cell 😍 Always blown away by the intellectual rigour, playful curiosity and community spirit I encounter at plant biology meetings. You folks are the best 🌱
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MwahahahahahadScientist @mads100tist.bsky.social · 28/08/2026
It's out! I will do a thread tomorrow, but for now: rejoice, my microscopy nerds and also learn about zebrafish notochord development! 🧪🐟
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onishilab.bsky.social @onishilab.bsky.social · 28/08/2026
With @wallaceucsf.bsky.social @gautamdey.bsky.social @sergemostowylab.bsky.social
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onishilab.bsky.social @onishilab.bsky.social · 28/08/2026
"Cell-autonomous immunity and the endosymbiotic theory: Septins at the origin?” doi.org/10.32942/X2X... We explore how ancestral septins may have recognized foreign cells - linking endosymbiosis, organelle fission, and innate immunity.
doi.org
Cell-autonomous immunity and the endosymbiotic theory: Septins at the origin?
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Katherine Brown @katherine-brown.bsky.social · 20/08/2026
How are you using AI tools in manuscript preparation, peer review and literature search/summarisation? Help shape our future policies in this area by filling in this survey - your feedback is much appreciated!
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preLights @prelights.bsky.social · 19/08/2026
Cellularization as a mechanism to build cells. #CellBio #DevBio Supported by @girishkalephd.bsky.social, Anne Ruess highlights a #preprint of @margaridaaraujo.bsky.social et al. @hiralshah.bsky.social @gautamdey.bsky.social @dudinlab.bsky.social #preLight⬇️ prelights.biologists.com/highlights/m...
prelights.biologists.com
Microtubules sustain the fidelity of cellularization in a coenocytic relative of animals - preLights
Cellularization as a mechanism to build cells
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Kutay lab @kutaylab.bsky.social · 09/08/2026
Excitingly, related work from the Weis lab on which we collaborated also recently been published!
cell.com
A conserved mechanism of membrane fusion in nuclear pore complex assembly
Fischer et al. uncover a fundamental mechanism of membrane fusion during nuclear pore complex (NPC) assembly. Brl1 and Brr6 form ring-shaped, membrane-remodeling complexes that interact and bridge the...
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Kutay lab @kutaylab.bsky.social · 09/08/2026
We are excited by the publication of our work on Torsin1A, its interaction partner CLCC1, and their role in membrane fusion during NPC biogenesis! A fantastic collaboration with @jagannathan-lab.bsky.social @labvanni.bsky.social @gautamdey.bsky.social and the Korkhov and Antonin labs!
cell.com
The dystonia-associated Torsin1A sustains CLCC1 function in membrane fusion of the nuclear envelope for NPC biogenesis
Maslennikova et al. identify the ER membrane protein CLCC1 as an interaction partner of the dystonia-linked AAA+ ATPase Torsin1A. Torsin1A sustains the function of CLCC1, which is proposed to facilitate fusion of the nuclear envelope during NPC biogenesis by forming an oligomer that promotes lipid bilayer approach and remodeling.
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Noah Whiteman @nkwhiteman.bsky.social · 06/08/2026
I’m thrilled to share that our search for a tenure-track colleague in my *truly wonderful and collegial* Genetics, Genomics, Evolution and Development Division in the MCB Department at Berkeley @berkeleymcb.bsky.social is live! Please share this broad search widely: aprecruit.berkeley.edu/JPF05481
aprecruit.berkeley.edu
Assistant Professor -Genetics, Genomics, Evolution, and Development - Molecular and Cell Biology
University of California, Berkeley is hiring. Apply now!
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Yanlan Mao @yanlanmao.bsky.social · 30/07/2026
This epic paper, which has been a heroic 10 year journey for the lead author, Ricardo Barrientos, is finally out in Cell today! Many thanks to all co-authors, especially Billie Meadowcroft and Andela Saric for their beautiful MD simulations www.cell.com/cell/fulltex...
cell.com
Basement membrane turnover controls cell shape
Basement membranes are scaffolds of proteins, like collagen, that give organs shape. During development, basement membranes must adapt to the growing organ. We infer how fast the basement membrane ada...
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Alex Eve @amjeve.uk · 26/07/2026
Congratulations, @jeffreyafarrell.bsky.social, on winning the @socdevbio.bsky.social #2026SDB Elizabeth D. Hay New Investigator Award! Learn more about Jeff's science and career in his @dev-journal.bsky.social interview with @saanjbati.bsky.social.
doi.org
Transitions in development – an interview with Jeffrey Farrell
Jeffrey Farrell is an Earl Stadtman Investigator at the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD), USA, where he heads the Unit on Cell Specification and ...
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The EMBO Journal @embojournal.org · 24/07/2026
Looking for weekend reading? New review by @kei-jokura.bsky.social and @jekely.biologists.social.ap.brid.gy revisits nerve nets, their functional organization, and evolutionary implications link.springer.com/article/10.1...
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SourjikLab @sourjik-lab.bsky.social · 21/07/2026
Together with @thanbichlerlab.bsky.social, we are looking for an ambitious PhD student to develop fluorescence imaging for anaerobic bacteria. Check out this and other positions that are announced as a part of the M4C Excellence cluster here: stellenangebote.uni-marburg.de/jobposting/2...
stellenangebote.uni-marburg.de
Doctoral and Postdoctoral Researcher Positions in the Cluster of Excellence ‘Microbes for Climate’
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EMBL @embl.org · 17/07/2026
👏 Congrats to EMBL Group Leader @gautamdey.bsky.social on an ERC Proof of Concept Grant to develop a new way of selecting cells for more efficient and versatile evolutionary biology studies. bit.ly/3Rd3H9m @erc.europa.eu
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Gautam Dey @gautamdey.bsky.social · 16/07/2026
Jana combines evolutionary genomics, quantitative cell biology and experimental evolution with exceptional creativity to tackle big questions in cellular evolution. It has been a privilege & a joy to have her in the lab these years - I can’t wait to see what she does next in her wonderful new home
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Luis Javier Galindo @luisjagago.bsky.social · 10/07/2026
In September we will have the pleasure of hosting Karla and @fmikus.bsky.social from the labs of @dudinlab.bsky.social and @gautamdey.bsky.social. If you are around Granada please join us for their talk! They will present ExÂME, an incredible initiative to build a 3D atlas of protists diversity!
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Amro Hamdoun @hamdounlab.bsky.social · 07/07/2026
More than a decade since CRISPR-Cas9 knock in came on the scene, it's remained underutilized in emerging models. Using transposase, and a split-FP system, we built an optimized knock in system for use in the genetically-enabled urchin, Lytechinus pictus. bit.ly/4wswLsd
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Ricard Solé @ricardsole.bsky.social · 03/07/2026
What kinds of living protocells could be created? In this @royalsocietypublishing.org paper, we made a systematic exploration, from Rashevsky and Turing chemical protocells to Ganti's chemoton, Szostak's ribocells, transduction-driven cells & minimal cells royalsocietypublishing.org/rstb/article...
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Vasily Zlatogursky @zlatogursky.bsky.social · 29/06/2026
1/11 🤩Sooooo happy to see this work on a new new group #algae. Looks like #centrohelids - predatory ancient eukaryotic lineage sometimes harbor vertically-inherited plastids from #dictyochophytes. Amazing work, @annewalraven.bsky.social, glad to be on board! More below:
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Scott Coyle @cellraiser.bsky.social · 24/06/2026
@zjmaggiexu.bsky.social's story on suctorian trap structure adaptation is now online in @currentbiology.bsky.social , with new evolutionary analyses and modeling! This fall, Maggie will keep exploring predatory protists as a PD in @nbellono.bsky.social group; keep an eye out for her she's amazing!
sciencedirect.com
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