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Jens Schmidt

@jenscs83.bsky.social
828 followers 932 following 124 posts

Cancer Biologist, Husband, Father. Interested in Genomic Integrity, Telomeres, Autophagy, and Single Molecule Microscopy. www.theschmidtlab.com

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Jens Schmidt @jenscs83.bsky.social · 15/09/2026
We are recruiting a postdoctoral fellow to study DNA damage repair via the homologous recombination pathway using quantitative cell biology approaches. The position will be initially supported for two years by the MSU Research Foundation Postdoctoral Scholars program. Please share! 1/5
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Jim Hurley @jimhurley.bsky.social · 06/09/2026
The ULK1 complex triggers autophagy on membranes, but with no typical membrane binding domains, how does it get there? See the answer in a brilliant collective effort out now in Science Advances: www.science.org/doi/10.1126/....
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Evgeny Kvon @evgenykvon.bsky.social · 18/08/2026
“Super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting” www.cell.com/cell-genomic...
cell.com
Single-cell 3D genome imaging shows super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting
Super-enhancers have been proposed to cluster in the nucleus when compared to other genomic elements. Le et al. found that super-enhancer clustering was rare and driven by non-specific interactions. P...
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Genes & Development @genesdev.bsky.social · 12/08/2026
RESEARCH PAPER: SMARCAL1 is a candidate therapeutic target for ALT-positive tumors By Taglialatela et al., and Alberto Ciccia ➡️ genesdev.cshlp.org/content/40/15-16… Alberto Ciccia Angelo Taglialatela Columbia University #cancer #telomere #cancertherapy
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bioRxivpreprint @biorxivpreprint.bsky.social · 13/08/2026
Sequential division of labor between PAXX and XLF drives NHEJ synaptic complex stability and maturation www.biorxiv.org/content/10.64898/20…
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Molecular Cell @cp-molcell.bsky.social · 24/06/2026
Online Now: A dynamic RNA hub facilitates activation-induced cytidine deaminase recruitment to the immunoglobulin heavy-chain locus Online now:
dlvr.it
A dynamic RNA hub facilitates activation-induced cytidine deaminase recruitment to the immunoglobulin heavy-chain locus
Mikhova et al. used live-cell single-molecule imaging to track the nuclear dynamics of AID and switch region transcription in B cells undergoing class switch recombination and discovered an RNA hub formed by tethered nascent transcripts that facilitates the recruitment and retention of AID at the IgH locus.
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Jens Schmidt @jenscs83.bsky.social · 23/06/2026
We are looking to hire 2 postdoctoral fellows to study the molecular mechanisms underlying class switch recombination using advanced single-molecule imaging techniques in living B Cells. The positions are fully funded and will build on our findings published today in Molecular Cell. Please Share!
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Jens Schmidt @jenscs83.bsky.social · 23/06/2026
Out today in Molecular Cell! Lead by Mariia Mikhova and in collaboration with Kefei Yu’s lab @msumgi.bsky.social we dug into the molecular mechanism of class switch recombination in B cells using simultaneous RNA and protein single-molecule imaging. 1/n www.cell.com/molecular-ce...
cell.com
A dynamic RNA hub facilitates activation-induced cytidine deaminase recruitment to the immunoglobulin heavy-chain locus
Mikhova et al. used live-cell single-molecule imaging to track the nuclear dynamics of AID and switch region transcription in B cells undergoing class switch recombination and discovered an RNA hub fo...
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Anders Sejr Hansen @andersshansen.bsky.social · 22/06/2026
(1/n) Very excited to share tri-lab collab (Mirny & Zechner) led by Harvey, Henrik & Jack: Q: How do enhancers & promoters interact in space (contact vs. action-at-a-distance) and time (stable vs. transient)? A: Transient E-P contact (~25-42 nm lasting ~10-20 sec): www.biorxiv.org/content/10.6...
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Matthew Taliaferro @jmtali.bsky.social · 11/06/2026
New paper! How do RNAs "know" where to go inside a cell? We dug into the sequence elements that route RNAs to the right place. It turns out that, in mammals, they're surprisingly massive (>200 nt), multipartite, and wonderfully complicated. 🧵
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Jens Schmidt @jenscs83.bsky.social · 11/06/2026
I am looking to recruit 2 postdoctoral fellows to the lab to work on a recently funded project focused on class switch recombination in B cells. If you are interested in immunology, gene expression, and RNA and protein single molecule imaging, please reach out (schmi706@msu.edu). Please share!
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Alberto Ciccia @albertociccia.bsky.social · 08/06/2026
Excited to finally share our preprint on mapping the genetic interaction network of the DNA damage response with combinatorial knockout screens led by Sam Hayward, Alina Vaitsiankova, and Tomas Lama-Diaz! www.biorxiv.org/cgi/content/...
biorxiv.org
Mapping the genetic landscape of the DNA damage response with Cas12a-based combinatorial knockout screens
The DNA damage response (DDR) is a complex network of cellular pathways that ensures the faithful maintenance of our genomes upon a wide array of genomic insults. To elucidate the functional architect...
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Carlo Barnaba 🇮🇹🇲🇽 @barnabalab.bsky.social · 06/06/2026
🔥PREPRINT🔥: Metformin Redirects Autophagy from Bulk Turnover to Mitochondrial Clearance. www.biorxiv.org/content/10.6... This truly was a team effort. @kupharmchem.bsky.social
biorxiv.org
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Di Jiang @dijiang319.bsky.social · 19/02/2026
@science.org Evolution of error correction through a need for speed | Science #evolution 🧬🔬 www.science.org/doi/10.1126/...
science.org
Evolution of error correction through a need for speed
Kinetic proofreading is a class of error-correcting mechanisms in biology that expend energy to avoid mistakes during replication, transcription, and translation. Proofreading is typically assumed to ...
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Jens Schmidt @jenscs83.bsky.social · 23/01/2026
New pre-print from the lab! Lead by Mariia Mikhova and in collaboration with Kefei Yu’s lab @msumgi.bsky.social we dug into the molecular mechanism of class switch recombination in B cells using simultaneous RNA and protein single-molecule imaging. 1/n www.biorxiv.org/content/10.6...
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Timothy Bredy @twbredy.bsky.social · 21/01/2026
www.colorado.edu/today/2026/0...
colorado.edu
Tom Cech to Davos: RNA research is 'still a big deal'
The Nobel laureate and CU Boulder professor, recently ranked #1 globally for RNA research, will speak at the World Economic Forum annual meeting in Davos,
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Tony Cesare @thecesarelab.bsky.social · 03/12/2025
New @natcomms.nature.com paper today from Tracy Bryan's lab @cmri.bsky.social: "Nuclear actin and DNA replication stress regulate telomere maintenance by telomerase". Happy our lab could play a small part. Congrats Tracy, Ash Harman, Noa Lamm and the whole team. www.nature.com/articles/s41...
nature.com
Nuclear actin and DNA replication stress regulate telomere maintenance by telomerase - Nature Communications
Telomerase recruitment to telomeres is a tightly regulated process which is stimulated by replication stress. Here, the authors identify that nuclear filamentous actin is important for interaction bet...
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Ross Chapman @rosschapmanlab.bsky.social · 01/12/2025
New lab preprint! ERCC6L2 disease is a recessive bone marrow failure syndrome caused by mutations in the putative DNA helicase ERCC6L2. Using mouse genetics, biochemistry and AF3 we uncover ERCC6L2-MRI as a KU-regulatory complex stimulating NHEJ at staggered DSBs: www.biorxiv.org/content/10.1...
biorxiv.org
The ERCC6L2-MRI-KU complex coordinates NHEJ at staggered DNA double-strand breaks
ERCC6L2 disease is a recessive bone marrow failure (BMF) syndrome caused by mutations in the SNF2-like putative DNA helicase ERCC6L2. While implicated in DNA replication, double strand break (DSB) rep...
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Jens Schmidt @jenscs83.bsky.social · 21/11/2025
New Print Alert! A fun collab with Kathy Meek at MSU. Led by talented bioinformatician Giovanni Pascarella we demonstrate that Ku70/80 binds intronic antisense Alu elements to inhibit cryptic splice sites. For details see the thread below! 1/n www.biorxiv.org/content/10.1...
biorxiv.org
Ku limits aberrant mRNA splicing promoted by intronic antisense Alu elements
Alu elements are short repeats that occupy approximately 10% of the human genome. Saturation of primate genomes with Alu sequences occurred at the prosimian/new-world monkey evolutionary juncture. Alu...
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Ci Ji (CJ) Lim @cijilim.bsky.social · 30/10/2025
Our paper in Science is out! @souravagrawal.bsky.social, @rlynn.bsky.social, @susvirkar.bsky.social, and the rest of the team show human RPA is a telomerase processivity factor essential for telomere maintenance. This reshapes our thinking about telomerase regulation. www.science.org/doi/10.1126/...
science.org
Human RPA is an essential telomerase processivity factor for maintaining telomeres
Telomerase counteracts telomere shortening by repeatedly adding DNA repeats to chromosome ends. We identified the replication protein A (RPA) heterotrimer as a telomerase processivity factor critical ...
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 23/10/2025
"Our findings uncovered a species survival strategy in which telomerase RNA extends telomeres for the next generation by hitchhiking on introns of germline-expressed genes." 🤯 #Celegans 🧪
science.org
Nematode telomerase RNA hitchhikes on introns of germline–up-regulated genes
Telomerase is a ribonucleoprotein complex that elongates telomeric DNA, ensuring germline immortality. In this study, we identified the Caenorhabditis elegans telomerase RNA component 1 (terc-1), as t...
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Sternberg Lab @sternberglab.bsky.social · 17/10/2025
1/10 Genome maintenance by telomerase is a fundamental process in nearly all eukaryotes. But where does it come from? Today, we report the discovery of telomerase homologs in a family of antiviral RTs, revealing an unexpected evolutionary origin in bacteria. www.biorxiv.org/content/10.1...
biorxiv.org
Antiviral reverse transcriptases reveal the evolutionary origin of telomerase
Defense-associated reverse transcriptases (DRTs) employ diverse and distinctive mechanisms of cDNA synthesis to protect bacteria against viral infection. However, much of DRT family diversity remains ...
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Tomas Janovic @janovictom.bsky.social · 25/08/2025
🚨 Excited to share my main postdoc work from the @jenscs83.bsky.social lab, now out in Cell Reports! 👉 www.sciencedirect.com/science/arti... We dissect how shelterin proteins organize at telomeres in human cancer cells—revealing distinct subcomplexes that maintain chromosome ends. 🧵
sciencedirect.com
TRF1 and TRF2 form distinct shelterin subcomplexes at telomeres
The shelterin complex protects chromosome ends from aberrant DNA repair and regulates telomerase access to telomeres. Shelterin is composed of six pro…
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Addgene @addgene.bsky.social · 13/08/2025
Find the plasmids here! www.addgene.org/Francesca_Bo... Thanks for sharing protocols and materials!
addgene.org
Addgene: Francesca Bottanelli Lab Materials
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Fran Bottanelli @franbottanelli.bsky.social · 13/08/2025
Our protocol for gene editing is online and all plasmids are on @addgene.bsky.social! CRISPR away everybody and get in touch if you need anything 🤩
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Iain Cheeseman @iaincheeseman.bsky.social · 23/07/2025
New preprint! We solve a mystery you didn't know existed. Mitotic cells lack new transcription but require ongoing translation. Interphase mRNA half life is only 2-4 hrs. So how do cells arrest in mitosis for hours without depleting their transcriptomes? www.biorxiv.org/content/10.1...
biorxiv.org
Global inhibition of deadenylation stabilizes the transcriptome in mitotic cells
In the presence of cell division errors, mammalian cells can pause in mitosis for tens of hours with little to no transcription, while still requiring continued translation for viability. These unique...
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JStark lab @jstarklab.bsky.social · 16/06/2025
Excited this study is out - we helped with an experiment on Paxx www.nature.com/articles/s41...
nature.com
Dynamic assemblies and coordinated reactions of non-homologous end joining - Nature
Structures associated with the final steps of non-homologous end joining (NHEJ) and gap filling present new targets for NHEJ inhibition to enhance efficacy of radiotherapy and accuracy of gene editing...
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Iain Cheeseman @iaincheeseman.bsky.social · 16/06/2025
New pre-print! Ryan Kim et al distinguish the roles of the Spindle Assembly Checkpoint as a surveillance pathway only triggered by mitotic errors vs a mitotic timer that is required in every cell division. www.biorxiv.org/content/10.1...
biorxiv.org
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Andrew Plested @andrewplested.bsky.social · 05/06/2025
The 3rd Berlin Single Molecule Biophysics Course will run from 8th to 12th September at the HU-Berlin, Institute of Biology. Learn about single channels, single molecule TIRF, theory and analysis. Apply by 7th July at bsmbc@icloud.com. Fee waivers and bursaries available. ! Please share widely !
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Mike Feigin 🥯 @mikefeigin.bsky.social · 04/06/2025
Are you looking for a faculty job? We are hiring in my department at Roswell Park NOW. Contact me for details as I await the formal ad. (Please RT.)
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Mike Greicius @mikegreicius.bsky.social · 21/05/2025
🧪 #neurology #neuroskyence tinyurl.com/bp5d8386 Another beautiful example of NIH-SPONSORED bedside to bench and back to bedside work from an outstanding clinician scientist. This work is producing some of the most compelling responses to treatment in what is arguably the worst pediatric brain tumor.
tinyurl.com
‘The first experiments produced just jaw-dropping results’
Stanford neuro-oncologist Michelle Monje is pursuing a cure for a deadly pediatric brain cancer – and reshaping our understanding of how cancer and brain development intersect.
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JStark lab @jstarklab.bsky.social · 12/05/2025
New preprint from the lab @kaelamakins.bsky.social Genetic interactions between 53BP1-RIF1 and DNA-PKcs for DSB repair outcomes. www.biorxiv.org/content/10.1...
biorxiv.org
53BP1/RIF1 and DNA-PKcs show distinct genetic interactions with diverse chromosomal break repair outcomes.
DNA double strand breaks (DSBs) are the effective lesion of cancer radiotherapy and induce gene editing. 53BP1 accumulates at DSBs and is implicated in end joining (EJ) repair, but its influence on DS...
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Kelly Nguyen @kellythd-nguyen.bsky.social · 04/05/2025
A great end to another Telomeres CSH meeting! It was nice to see and discuss science with many colleagues. With @cijilim.bsky.social @jenscs83.bsky.social, Stone, Nandakumar, Zappulla labs at banquet
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Faraz Mardakheh @handle.invalid · 16/04/2025
🧵1/ 🚨Check out our significantly updated preprint, now out on @biorxivpreprint.bsky.social. Together with Sasi Conte lab, we characterize a novel role for intrinsically disordered regions (IDRs) in promoting RNA-binding selectivity in RNA binding proteins (RBPs): www.biorxiv.org/content/10.1...
biorxiv.org
An intrinsically disordered region mediates RNA-binding selectivity and pro-oncogenic activities of LARP6
Intrinsically disordered regions (IDRs) are prevalent in RNA-binding proteins (RBPs), yet their roles in RNA interactions remain poorly defined. Here, we examined the structured and disordered RNA-bin...
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Ines Patop @inespatop.bsky.social · 11/04/2025
And on other news. My first contribution to science as a postdoc with @stirlingchurchman.bsky.social is out! We discuss the knowns and unknowns of post-transcriptional splicing. It was really fun to write with the great @karinechoquet
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Doksani Lab @doksanilab.bsky.social · 20/03/2025
Telomere Community 🧬 Can't wait for the new CSHL Monograph? Our review on unusual structure at Telomeric repeats is now live on Cold Spring Harbor Perspectives! Grab a few free PDFs here: cshperspectives.cshlp.org/cgi/reprint/... #CHSL #AcademicSky #Science @ezeta.bsky.social @cshlnews.bsky.social
Screenshot reporting the Pubmed page of the review article published on  Cold Spring Harbor Perspectives in Biology by our Lab.
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Hopfner Lab @hopfnerlab.bsky.social · 17/03/2025
Happy to share our latest pre-print! We solved the cryoEM structures of human DNA repair factor MRN bound to DNA and to TRF2. Main work of Yilan, Filiz @filizkuybu.bsky.social and Hengjun. Great collab within the @sfb1361.bsky.social and @genecenter-lmu.bsky.social 🧬🔨 www.biorxiv.org/content/10.1...
biorxiv.org
Structural basis for DNA double-strand break sensing by human MRE11-RAD50-NBS1 and its TRF2 complex
The MRE11-RAD50-NBS1 (MRN) complex is a central, multifunctional factor in the detection, signaling and nucleolytic processing of DNA double-strand breaks (DSBs). To clarify how human MRN binds generi...
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John Ngo @johntngo.bsky.social · 03/03/2025
Plasmids for our destabilized MCP (dMCP) & PCP (dPCP) coat proteins are now on @addgene.bsky.social here: www.addgene.org/browse/article/28252367/ These proteins are degraded by cells except when bound to their RNA hairpin targets (MS2 & PP7): www.biorxiv.org/content/10.1101/2024.11.21.624393v1
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Jennifer Cash @jencash.bsky.social · 26/02/2025
Cash lab is hiring a junior specialist/lab manager. Please feel free to reach out to me for details! Link to apply here: recruit.ucdavis.edu/JPF07011 Lab website here: cash4rhogefs.faculty.ucdavis.edu
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Corentin Claeys Bouuaert @ccb-lab.bsky.social · 19/02/2025
🥳Just published @nature.com. Over 25 years after the discovery of SPO11 as the enzyme responsible for initiating meiotic recombination, we finally succeeded in reconstituting its DNA cleavage activity.🧵 www.nature.com/articles/s41...
nature.com
SPO11 dimers are sufficient to catalyse DNA double-strand breaks in vitro - Nature
A biochemical system recapitulates the hallmarks of meiotic double-strand break formation, with mouse SPO11 catalysing break formation in the absence of any partners and remaining covalently atta...
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Jens Schmidt @jenscs83.bsky.social · 19/02/2025
Thanks @franbottanelli.bsky.social for leading this effort! Addition genome editing plasmids are available on our labs addgene page. www.addgene.org/Jens_Schmidt/
addgene.org
Addgene: Jens Schmidt Lab Materials
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Fran Bottanelli @franbottanelli.bsky.social · 19/02/2025
Long in the making but our protocol for gene editing is online! FAB CRISPR is super easy and allows the generation of N and C terminal fusions with TurboID, SNAP, Halo and mStayGold. A single cloninf step to generate HDR templates! arxiv.org/abs/2502.12675 1/n
arxiv.org
Fast Antibiotic resistance-Based gene editing of mammalian cells with CRISPR-Cas9 (FAB-CRISPR)
Protein tagging with CRISPR-Cas9 enables the investigation of protein function in its native environment but is limited by low homology-directed repair (HDR) efficiency causing low knock-in rates. We ...
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Katie Sandlin @kmsandlin.bsky.social · 14/02/2025
I maxed out my credit card, emptied my savings account, and took out a loan to move from Alabama to Bethesda, MD. I don’t even qualify for unemployment since I’ve only worked at NIH for a month. I will be financially and medically devastated. Seeking suggestions for anywhere that’s hiring!!
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@tim_stasevich @tim-stasevich.bsky.social · 12/02/2025
Making intrabodies from antibodies just got easier! Learn how we made 𝟭𝟵 intrabodies to bind and light up peptides and histone modifications in live cells. And thanks to Academia, all sequences are freely available. (video credit: Yuko Sato @YukoSatoT2) (1/15) www.biorxiv.org/content/10.1...
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Jens Schmidt @jenscs83.bsky.social · 08/02/2025
In rare good news these days Hängen-Dasz has brought back pralines and cream! Even better, it was on sale!
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Anders Sejr Hansen @andersshansen.bsky.social · 16/01/2025
Excited to share James Jusuf's preprint: By integrating Micro-C with SuperRes Live-Imaging we can calibrate genomics&imaging to perform absolute quantification of looping (e.g. this loop is present 3%) We quantify mESC 36k loops: <loops> are generally rare (2.3%) www.biorxiv.org/content/10.1...
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Chen Davidovich @davidovichlab.bsky.social · 16/01/2025
We used cryoET and biophysical approaches in vitro together with molecular biology in differentiated cells to show that chromatin compacted by PRC1-CBX8 is porous and accessible while PRC1 is dynamic in it. 🧪🧬 #cryoET #Epigenetics #Polycomb www.nature.com/articles/s41...
nature.com
Dynamic PRC1–CBX8 stabilizes a porous structure of chromatin condensates - Nature Structural & Molecular Biology
Here the authors show that a gene-inactivating protein complex packs inactive genes into a dynamic and accessible structure. The study challenges the traditional views that restricted accessibility an...
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Rog lab at the University of Utah @theroglab.bsky.social · 15/01/2025
New preprint from the lab! We defined the kinetics of strand invasion during meiosis in C. elegans. Great work from Antonia, Henry and Divya. www.biorxiv.org/content/10.1...
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Sarah Aitken @s-j-aitken.bsky.social · 15/01/2025
Building on our discovery of #LesionSegregation, @mikespencerchapman.bsky.social and colleagues from @sangerinstitute.bsky.social find that some DNA lesions can persist in humans for months or years! "Prolonged persistence of mutagenic DNA lesions in somatic cells" www.nature.com/articles/s41...
nature.com
Prolonged persistence of mutagenic DNA lesions in somatic cells - Nature
Persistent DNA lesions can occur throughout the human lifespan and can remain in the genome of affected cells for several years and generate a substantial proportion of the mutational burden.
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bioRxiv Cell Biology @biorxiv-cellbio.bsky.social · 13/01/2025
The PST repeat region of MDC1 is a tunable multivalent chromatin tethering domain www.biorxiv.org/content/10.1101/202…
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