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Agnese Loda

@agneseloda.bsky.social
214 followers 248 following 40 posts

Epigenetics | X-Inactivation | Sex Differences | Developmental Gene Regulation | Genomics | www.institutimagine.org/en/agnese-l…

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Agnese Loda @agneseloda.bsky.social · 03/09/2026
🚀💥🚀💥🚀💥🚀💥 New preprint on the 3D features of X-linked escapee domains 💥🚀💥🚀💥 Fun collaboration with @mamartirenom.bsky.social lab! We hope you’ll like it 👇👇
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Pablo Navarro @pablonavarrolab.bsky.social · 15/08/2026
Happy to share our last work on mitotic bookmarking where we describe a new role for extensively studied TFs. Heroic effort by first author Inma over many years. genesdev.cshlp.org/content/earl...
genesdev.cshlp.org
Mitotic MAX bookmarking drives MYC-dependent hypertranscription at TBP-bound promoters
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
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Kristina Stapornwongkul @kstapornwongkul.bsky.social · 06/08/2026
First published teamwork of the lab 🎉! We wrote a review about emerging concepts of how metabolism promotes, regulates and changes during gastrulation. We hope it will be useful for anyone interested in the emerging field of developmental metabolism. www.sciencedirect.com/science/arti...
sciencedirect.com
A metabolic view of gastrulation: Coordinating signalling, epigenetics and morphogenesis
Gastrulation is the morphogenetic process by which the single-layered pluripotent epiblast is reorganised into the three germ layers and the basic bod…
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nellykanata.bsky.social @nellykanata.bsky.social · 28/07/2026
I am very excited to share the work of my PhD with @eddaschulz.bsky.social, now on BioRxiv! 🎉 🧵⬇️ (1/9) How does the transcription↔️chromatin crosstalk ensure monoallelic expression?
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Institut Jacques Monod @ijmonod.bsky.social · 04/06/2026
📢 Institut Jacques Monod Seminar 📅 June 5th 📍 Institut Jacques Monod Tomorrow, Alexander Meissner ( @molgen.mpg.de ) will present the Institut Jacques Monod lecture "Epigenetic regulation in development and disease " ➡️ buff.ly/00QpYG2
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Agnese Loda @agneseloda.bsky.social · 03/04/2026
Cool symposium in Paris💥💥💥👇
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Institut Pasteur | 130 years of biomedical research @pasteur.fr · 27/03/2026
Choanoflagellates — our closest animal relatives — form multicellular colonies in two ways: cell division AND aggregation. This previously unknown "mixed multicellularity" suggests our animal origins are more complex than thought. 📄 @thibautbrunet.bsky.social ↘️
pasteur.fr
Evolutionary biology: what an aquatic microorganism can tell us about our distant origins
Over a period of two to three billion years, the only living beings on Earth were single-celled organisms. In what conditions did living organisms with multiple cells emerge? How did life become more ...
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Agnese Loda @agneseloda.bsky.social · 27/03/2026
This is a FANTASTIC method to capture multilayer chromatin and gene regulation at allelic resolution(!!💥!!) on the same DNA molecule 🤩🥳🤩🥳 Well done @mpalamin.bsky.social and @arnaudkr.bsky.social 👏👏👏👏👏 - very beautiful work as always 💫💫💫!!
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Agnese Loda @agneseloda.bsky.social · 16/03/2026
I am very happy to share that I've started my new position @upcite.bsky.social and opened my lab @institutimagine.bsky.social 🎉 In the lab we will study how differences in X-linked gene dosage between the sexes affect fetal growth and survival and contribute to sex differences later in life 👩‍🔬🧪🧬🧫
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Michela Palamin @mpalamin.bsky.social · 11/03/2026
Tomorrow I’ll be presenting at the 2026 CSHL Systems Biology meeting! 🧬 Join to hear about ChromSMF, a genomic method for integrated measurement of histone modifications, protein-DNA interactions, and DNA methylation on the same multi-kilobase DNA molecules! 🚀 Preprint coming soon 😉
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Institut Pasteur | 130 years of biomedical research @pasteur.fr · 11/03/2026
👩‍🔬 Women’s Health, Women in Health Symposium Join us for a multidisciplinary event bridging biomedical research, public health, and social sciences. 🌍 🗓️ March 17, 2026 🔗 Register here: forms.office.com/Pages/Respon... #WomenInHealth
The Institut Pasteur is pleased to invite you to the symposium Women’s Health, Women in Health, a one-day event to be held on 17 March 2026 at the Institut Pasteur, as part of the Month of Equality and International Women’s Rights Day.

This event is part of the Pasteur Institute’s strategic plan, reflecting a shared commitment to scientific excellence through approaches that integrate the biological, social, and societal dimensions of health.

In this spirit, the symposium will explore key challenges in women’s health through a multidisciplinary lens, at the crossroads of biomedical research, public health and social sciences, with a strong focus on sex- and gender-related issues. By bringing together biological, clinical, epidemiological and social perspectives, the event aims to foster dialogue on how such integration can refine research questions, strengthen knowledge production and better respond to health needs.
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dimitristypas.bsky.social @dimitristypas.bsky.social · 06/03/2026
Tempted to add Metal gifs; that's how cool METALoci sounds! In their recent article @natsmb.nature.com, @dariloops.bsky.social @mamartirenom.bsky.social @jrotwitguez.bsky.social @imotagom.bsky.social and colleagues shed light on sex-determining 3D regulatory hubs. www.nature.com/articles/s41...
nature.com
Chromatin spatial analysis by METALoci unveils sex-determining 3D regulatory hubs - Nature Structural & Molecular Biology
METALoci, a new three-dimensional genome computational tool, reveals a major rewiring of regulatory interactions during sex determination. By combining this method with transgenic models, the authors ...
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Agnese Loda @agneseloda.bsky.social · 24/02/2026
This is such a beautiful work, congratulations to all authors! 👏👏👏👏
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Emmanuel Cazottes @manucazottes.bsky.social · 28/01/2026
Our paper on the evolution of XIST regulatory network in primates is now published in Science Advances! Check out the paper www.science.org/doi/10.1126/... or a digest of our findings emmanuelczt.github.io/posts/2026/0... A short 🧵 of our main findings 👇
science.org
Remodeling of XIST regulatory landscape during primate evolution
How gene regulation strategies rapidly evolve across short evolutionary timescales is explored.
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Elphege Nora Lab at UCSF @elphegenoralab.bsky.social · 12/02/2026
Interested in transcriptional regulation, enhancers and 3D genome folding? In this new study we wondered about the role of cohesin loading at enhancers for long-range transcriptional control www.biorxiv.org/content/10.6... detailed 🧵👇
biorxiv.org
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Nezha Benabdallah @nsbenab.bsky.social · 28/01/2026
SS18::SSX activates Polycomb target genes without BAF ❌ Instead, transcription relies on EP300 via the SS18 QPGY domain www.biorxiv.org/content/10.6... ➡️ Coactivator targeting emerges as a new therapeutic strategy in synovial sarcoma 🎯 Team work from @banitolab.bsky.social and @uoe-igc.bsky.social
biorxiv.org
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Vincent Pasque @pasquelab.bsky.social · 25/11/2025
𝐍𝐞𝐰 𝐩𝐫𝐞𝐩𝐫𝐢𝐧𝐭 𝐚𝐥𝐞𝐫𝐭! 🎉 “𝐗𝐈𝐒𝐓 𝐃𝐫𝐢𝐯𝐞𝐬 𝐗-𝐂𝐡𝐫𝐨𝐦𝐨𝐬𝐨𝐦𝐞 𝐈𝐧𝐚𝐜𝐭𝐢𝐯𝐚𝐭𝐢𝐨𝐧 𝐚𝐧𝐝 𝐒𝐚𝐟𝐞𝐠𝐮𝐚𝐫𝐝𝐬 𝐅𝐞𝐦𝐚𝐥𝐞 𝐄𝐱𝐭𝐫𝐚𝐞𝐦𝐛𝐫𝐲𝐨𝐧𝐢𝐜 𝐂𝐞𝐥𝐥𝐬 𝐢𝐧 𝐇𝐮𝐦𝐚𝐧𝐬” 𝐢𝐬 𝐧𝐨𝐰 𝐨𝐧 𝐛𝐢𝐨𝐑𝐱𝐢𝐯! www.biorxiv.org/content/10.1...
biorxiv.org
XIST Drives X-Chromosome Inactivation and Safeguards Female Extraembryonic Cells in Humans
Dosage compensation of sex chromosomes through X-chromosome inactivation (XCI) is required for mice extra-embryonic tissue growth and embryo development. The species specificity in mechanisms and timi...
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Nikos Konstantinides @nkonst4.bsky.social · 10/01/2026
I am very happy (and a bit scared) to present to you what we have been working on over the last 4 years. This manuscript is exactly what I dreamt of when I started the lab and I could not be happier and prouder of the outcome!
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Jamie Hackett @jamiehackett.bsky.social · 05/01/2026
This went under the radar but answers a fundamental question in Epigenetics... From many hundreds of olfactory receptor genes, each neuron selects expression of only single one (near-randomly). How? Outstanding work from Mathieu Boulard and colleagues www.biorxiv.org/content/10.6...
biorxiv.org
The transcription of a single olfactory receptor per neuron is enforced by epigenetic silencing of their enhancers
The ability to discriminate thousands of odors in our environment requires each olfactory neuron to express a single olfactory receptor from hundreds of available genes. The biochemical mechanism enfo...
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Nature Cell Biology @natcellbio.nature.com · 02/01/2026
☕The authors show that increased #Xist RNA levels can induce de novo silencing of genes that normally escape #Xinactivation. SPEN depletion prevents the silencing of escape genes upon Xist RNA overexpression in neural progenitors. @agneseloda.bsky.social @heardlab.bsky.social bit.ly/3YUnzhw
bit.ly
Escape from X inactivation is directly modulated by Xist noncoding RNA - Nature Cell Biology
The authors show that increased Xist RNA levels can induce de novo silencing of genes that normally escape X inactivation. SPEN depletion prevents the silencing of escape genes upon Xist RNA overexpre...
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Job Dekker @jobdekker.bsky.social · 22/12/2025
Exciting new paper out! @allanaschooley.bsky.social and Sergey Venev led this project that let to the discovery of two chromosome folding programs: one inherited via mitotic chromosomes and one mitotic inherited through the cytoplasm! www.nature.com/articles/s41...
nature.com
Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm - Nature Cell Biology
Schooley et al. find that mitotically bookmarked loci drive a transient chromosome folding state during G1 entry that is subsequently modulated by factors inherited through the cytoplasm.
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Agnese Loda @agneseloda.bsky.social · 17/12/2025
Great opportunity - wonderful team and research 👇👇👇👇!!
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Epigenome Technologies @epigenometech.bsky.social · 17/12/2025
Epigenetics Update - Escape from X inactivation is directly modulated by Xist noncoding RNA go.nature.com/49jeLH5 Edith Heard and Agnese Loda (EMBL) reporting in Nat Cell Biol #Epigenetics #Xist #XInactivation #Chromatin --- Perfect for cancer, immunology, and aging research; epigenometech.com
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Agnese Loda @agneseloda.bsky.social · 15/12/2025
Very happy to share our paper rdcu.be/eUImj out today in @natcellbio.nature.com 🎉🎉🎉 We uncover an unexpected role for endogenous Xist RNA in regulating X-linked genes that escape X-inactivation.
rdcu.be
Escape from X inactivation is directly modulated by Xist noncoding RNA
Nature Cell Biology - The authors show that increased Xist RNA levels can induce de novo silencing of genes that normally escape X inactivation. SPEN depletion prevents the silencing of escape...
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Vincent Pasque @pasquelab.bsky.social · 03/12/2025
We are excited to share our new preprint: SMARCA2/4-Dependent Chromatin Remodelling Establishes Gene Regulatory Programs in Early Human Embryos and Blastoids. www.biorxiv.org/content/10.64898/2025.12.01.691499v1
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Edda Schulz @eddaschulz.bsky.social · 17/11/2025
📣 SAVE THE DATE Next X-inactivation meeting in Sapporo, Japan, 19-23 October 2026. Visit x-inactivation-meeting.org to join our mailing list. 🧬 speakers @dandergassen.bsky.social @marnieblewitt.bsky.social @heard65.bsky.social @crougeulle.bsky.social @sexchrlab.bsky.social @zhouqi1982.bsky.social
Poster advertising the 6th X-inactivation meeting from Oct 19-23 2026 in Sapporo, Japan. The organizers are Asato Kuriowa, Edda Schulz, Ikuhiro Okamoto, Rafael Galupa, Takashi Sado, Mitinori Saitou.
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Epigenetics Podcast @epigeneticspod.bsky.social · 31/10/2025
In this episode we talked with @pasquelab.bsky.social from KU Leuven about his work on the reprogramming of cell identity through epigenetic mechanisms, particularly during early development and cellular reprogramming. #epigenetics #podcast Listen here: activemotif.com/podcasts-vin...
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Daniel Ibrahim @danielibrahim.bsky.social · 16/10/2025
What is a promoter? And how does it work? We very happy to share our latest work trying to understand enhancer-promoter compatibility. I am very excited about the results of @blanka-majchrzycka.bsky.social, which changed the way I think about promoters www.biorxiv.org/content/10.1...
biorxiv.org
Enhancer-promoter compatibility is mediated by the promoter-proximal region
Gene promoters induce transcription in response to distal enhancers. How enhancers specifically activate their target promoter while bypassing other promoters remains unclear. Here, we find that the p...
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Maxim Greenberg @maxvcg.bsky.social · 15/09/2025
Very excited to share an excellent review from @teresa-urli.bsky.social, published one week before her PhD defense! We did a deep dive into the fascinating biology of the variant Polycomb complex, PRC1.6 (1/5) journals.plos.org/plosgenetics...
journals.plos.org
Epigenetic relay: Polycomb-directed DNA methylation in mammalian development
In mammals, repression of germline-specific gene expression is essential for preserving somatic cell identity and preventing disease. Germline gene silencing is often dependent on the presence of prom...
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Eileen Furlong @eileen-furlong.bsky.social · 11/08/2025
Open Team Leader position @embl.org to head & reshape our Genomics Core facility. Interested in providing & developing state-of-the art omics tech to a wide community? A very vibrant, dynamic place to work with fantastic colleagues. Closing Sept 30th embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
embl.wd103.myworkdayjobs.com
Team Leader – Genomics Core Facility and Method Development
Are you ready to lead a cutting-edge Genomics Core facility while developing state of the art genomics methods? Join us at EMBL! We are seeking talented scientists to develop and lead a cutting-edge G...
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Romain Koszul @rkoszul.bsky.social · 11/08/2025
New work from @beckof.bsky.social and our lab's collaboration, with @alengronne.bsky.social! Multifaceted influence of transcription on yeast chromosome folding... loop extrusion of course but also active promoters making loops, bypassing centromeres boundaries www.sciencedirect.com/science/arti...
sciencedirect.com
RNA Pol II-based regulations of chromosome folding
The spatial organization of eukaryotic genomes and its dynamics are of functional importance for gene expression, DNA replication, and segregation. St…
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Vicki Metzis @vmetzis.bsky.social · 27/06/2025
Paper alert! I am really pleased to share the final version of the work led by Irène Amblard in the team on a regulatory switch controlling Cdx2 expression during posterior body development! #regulatorylogic #devbio @mrc-lms.bsky.social @imperialmed.bsky.social
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Luca Giorgetti lab @FMI @lucagiorgetti.bsky.social · 26/06/2025
We are looking for a research assistant to join our lab and support ongoing projects with genome engineering in mouse embryonic stem cells! Please get in touch if you are interested. www.fmi.ch/education-ca...
fmi.ch
Friedrich Miescher Institute, open position
Friedrich Miescher Institute, open position
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Agnese Loda @agneseloda.bsky.social · 25/06/2025
Congratulations Juliane @julianeg.bsky.social 🥳🥳🥳🥳🥳 looking forward to see your lab in action 🤩🤩🤩!!
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Development @dev-journal.bsky.social · 17/06/2025
Transitions in development – an interview with Jan Żylicz We met with @jzylicz.bsky.social‬ (reNEW @ucph.bsky.social) on Teams to learn more about working abroad, finding a good mentor and his career path so far: journals.biologists.com/dev/article/...
Photo of Jan Żylicz
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Jamie Hackett @jamiehackett.bsky.social · 15/05/2025
We are looking to take on an intern at EMBL Rome, for anyone interested in CRISPR and Epigenetics training. The traineeship is 3-12-months, in Rome (Italy), should start by July, and is supervised by the outstanding @steliostsagkris.bsky.social. #job #internship; see info below...
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EMBL @embl.org · 14/05/2025
EMBL’s departing director general, Edith Heard, reflects on her legacy at Europe’s life science institute as she prepares for new leadership challenges at the Francis Crick Institute (@crick.ac.uk) . Read more: www.embl.org/news/people-...
embl.org
Edith Heard: what I’ve learned | EMBL
As EMBL’s fifth Director General departs for a new role as Crick Institute CEO, she reflects on EMBL and lessons learned through the years.
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dandergassen.bsky.social @dandergassen.bsky.social · 02/05/2025
I’m incredibly proud to share the results of our lab’s first project, leading to the exciting discovery – Aging promotes reactivation of the Barr body at distal chromosome regions – now published in @nataging.nature.com! 🔗 tinyurl.com/3jkzzy7d
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Agnese Loda @agneseloda.bsky.social · 25/04/2025
Well done Jan and team! Such a beautiful work 👏👏👏🤩🤩🤩
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Valentina Baderna @valentinabaderna.bsky.social · 08/04/2025
Happy to share the latest story from @arnaudkr.bsky.social's lab @embl.org! With @guidobarzaghi.bsky.social, we used Single Molecule Footprinting to quantify how often chromatin is accessible at enhancers after TF and chromatin environment changes! Check our preprint bit.ly/3XQMFxN + thread ⬇️ 1/11
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Marc A. Marti-Renom @mamartirenom.bsky.social · 29/03/2025
Looking for a PhD in sunny Barcelona? ☀️🔬 Our team is hiring a PhD student for the @hologen.bsky.social project! 📅 Deadline: Apr 20 ⚠️ READ THE MOBILITY RULE FOR THIS POSITION 🔁 Please, spread the word All the info here 👉 www.cnag.eu/jobs/phd-stu... #PhDlife #Genomics #HoloGen #Barcelona
cnag.eu
PhD Student - Structural Genomics Team (HoloGen Project) | CNAG, Centro Nacional de Análisis Genómico
MPORTANT MOBILITY RULE FOR THIS POSITION The MSCA mobility rule applies to this position: the applicant must not have resided or carried out their main activity (e.g., studies, work, research) in Spai...
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dandergassen.bsky.social @dandergassen.bsky.social · 06/03/2025
I am super proud to share the first Andergassen Lab preprint! Here, we introduce a new framework to decode the non-coding genome, led by the outstanding work of @hasenbeint.bsky.social and co-authors Sarah Hölzl, Stefan Engelhardt @tum.de👇🧵
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Vincent Pasque @pasquelab.bsky.social · 15/03/2025
Excited to share our recent review on extraembryonic mesoderm development, just published in Development! "Extra embryonic mesoderm during development and in in vitro models." journals.biologists.com/dev/article/...
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Boyan Bonev @boyanbonev.bsky.social · 13/03/2025
🚨New preprint from @bonevlab.bsky.social 🚨: What are the key epigenetic mechanisms that drive species-specific gene regulation during primate neurogenesis - and how do they contribute to the evolution of the human neocortex? Here’s what we discovered 👇 www.biorxiv.org/content/10.1...
biorxiv.org
3D Epigenome Evolution Underlies Divergent Gene Regulatory Programs in Primate Neural Development
The expansion of the neocortex is a hallmark of human evolution and is closely linked to neural stem cell biology. Yet, the epigenetic mechanisms driving divergent gene regulation during primate neuro...
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Maxim Greenberg @maxvcg.bsky.social · 07/03/2025
PUBLIC RESEARCH!! ✊🧪 @standupforscifr.bsky.social @sufs-paris-rp.bsky.social @standupforscience.bsky.social
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Agnese Loda @agneseloda.bsky.social · 22/01/2025
My first post here to share this beautiful work that I’m so happy to see out this week! Congratulations @maudborensztein.bsky.social and the entire team 💥
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