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Darío Lupiáñez

@dariloops.bsky.social
1.2K followers 295 following 126 posts

A bit of 3D gene regulation, single-cell omics and transgenic models. Born and raised in the bay of Algeciras. Enjoying Science and Flamenco at CABD, Seville. Lab website: lupianezlab.github.io/Website Email: dario.lupianez@csic.es

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Reposted by Darío Lupiáñez
Mark A. Hanson @hansonmark.bsky.social · 26/09/2026
I'm surprised a community of publishing writers can blame AI for the problems of peer review when those same writers cite our study, "the strain on scientific publishing", which characterizes how this problem existed before AI. bit.ly/StrainQSS It's the incentives structure, not the AI. 1/n
scholarlykitchen.sspnet.org
Ask the Chefs: Peer Review Capacity — Uncomfortable Truths and Overlooked Conversations - The Scholarly Kitchen
For Peer Review Week 2026, we asked the Chefs two questions: What is one uncomfortable truth about peer review that the scholarly publishing community doesn’t talk about enough? And, beyond recruiting...
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Centro Andaluz de Biología del Desarrollo @cabd-upo-csic.bsky.social · 24/09/2026
Darío Lupiáñez @dariloops.bsky.social del #CABD ha explicado al #DiariodeSevilla sus investigaciones, como la ciencia va evolucionando y como “En pocos años, secuenciar nuestro genoma será tan rutinario como hacernos un análisis de sangre” 🔗 www.diariodesevilla.es/entrevistas/...
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heardlab.bsky.social @heardlab.bsky.social · 03/09/2026
NEW PREPRINT FROM THE LAB IS OUT — DON’T MISS IT! www.biorxiv.org/content/10.6... We asked whether the 3D architecture of the inactive X -  and in particular CTCF and cohesin -  is what keeps escapee genes active. Spoiler: it isn’t.
biorxiv.org
X-inactivation escapee domains are CTCF-cohesin independent chromatin compartments
X-chromosome inactivation involves chromosome-wide gene silencing accompanied by extensive chromatin changes, as well the loss of topologically associating domains. Yet discrete regions of the inactiv...
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 01/09/2026
Have you ever wondered why developmental genes are often regulated by enhancers located at long distances? In this @natgenet.nature.com perspective, we speculate that long-range enhancer positioning may provide regulatory properties essential for proper gene expression www.nature.com/articles/s41...
nature.com
Mechanisms and functional implications of long-range enhancer-dependent gene regulation - Nature Genetics
Development depends on gene regulation by enhancers across long genomic distances. This Perspective discusses mechanisms enabling long-range enhancer–promoter communication and the potential advantage...
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Akis (Argyris) Papantonis @akispapantonis.bsky.social · 25/08/2026
Newest from the lab - and the only of our manuscripts since the introduction of bioRxiv that we did not preprint (it will become obvious why). "Targeting addiction to HMGB2-driven transcriptional programs in pancreatic cancer" A thread...
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Cabimer @cabimer.bsky.social · 20/08/2026
🔬 Metástasis: ¿su punto débil? @alteamanzanolab.bsky.social  @eleconomista.es 
eleconomista.es
La científica española que busca el punto débil de la metástasis del cáncer: "El gran reto es entender qué hace que estas células tengan superpoderes"
Tener 'superpoderes' no siempre es positivo y tampoco se asocia siempre a héroes que salvan el mundo. Se define como una habilidad o facultad extraordinaria, es decir, fuera de lo común, y es lo que ocurre con las células tumorales capaces de iniciar la metástasis. Patricia Altea (Sevilla, 1988), directora del grupo de Regulación Metabólica y Señalización en Cáncer del Centro Andaluz de Biología Molecular y Medicina Regenerativa (CABIMER) quiere descubrir porqué estas unidades concretas tienen dicha cualidad y junto con su equipo en el CABIMER investiga cómo funciona este proceso para cambiar el pronóstico de las pacientes con cáncer de mama. Ella fue la ganadora del premio a la mejor investigadora joven de los Premios Hipatia de elEconomista.es en su última edición.
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Tineke Lenstra @tinekelenstra.bsky.social · 17/08/2026
Sign up now for the EMBO meeting 'quantitative biology to molecular mechanisms'. Fantastic speaker lineup and plenty of speakers slots selected from abstracts. Submit your abstract before Sept 11!
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Marieke Oudelaar @mariekeoudelaar.bsky.social · 26/05/2026
📣 Preprint alert! We developed a method to analyze concurrent interactions between multiple chromatin regions at single alleles at sub-nucleosome resolution (multi-way Micro-Capture-C, mwMCC) & used this to study structural synergy within super-enhancers. 1/14 www.biorxiv.org/content/10.6...
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Teresa Rayon @trayon.bsky.social · 15/08/2026
Our work on the role of the proteasome in developmental tempo is out!!!! 🐭⌛️👤⏳ Six years after identifying an association between protein stability and developmental tempo, we now demonstrate a causal link between protein turnover and developmental tempo through proteasomal degradation
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Arnaud Krebs @arnaudkr.bsky.social · 12/08/2026
How many TFs to you need to open chromatin at enhancers? Very excited to see this one out! Check out the augmented version with combinatorial motif mutant libraries in Figure 5! Very proud of @guidobarzaghi.bsky.social @valentinabaderna.bsky.social @embl.org
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Marc A. Marti-Renom @mamartirenom.bsky.social · 08/08/2026
🚨the latest from the lab! 😃👇🏻 www.science.org/doi/10.1126/...
science.org
3D genome organization in tissue regeneration involves long-range chromatin loops
Chromosome conformation analysis in Drosophila wing discs reveals the requirement of specific meta-loops during regeneration.
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Alex de Mendoza @alexdemendoza.bsky.social · 03/08/2026
Sailing in @biorxivpreprint.bsky.social ready for summer, our study on the iconic Portuguese man o' war 🪼 is out: www.biorxiv.org/content/10.6.... We use (epi)genomics to understand a critter that fascinates me since childhood. Massive team effort with @obog.bsky.social, Cummins and Neely groups. 🧵
the indo-pacific bluebottle (Physalia utriculus)
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EvodevogenomeUB- Cañestro’s lab @evodevogenomeub.bsky.social · 30/07/2026
🫵🏼 If you want to do a PhD studying this wonderful creature of the pic, WE ARE NOW HIRING 💰!! Go to our profile for more info ℹ️. Postdocs are also welcome to get in touch!! 👇🏼👇🏼👇🏼👇🏼
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Luca Giorgetti lab @FMI @lucagiorgetti.bsky.social · 28/07/2026
Thank you @natgenet.nature.com for this nice Research Briefing www.nature.com/articles/s41... on our recent paper reporting live-cell measurements of Sox2 promoter bursting kinetics when varying its genomic distance from the SCR enhancer 👉 www.nature.com/articles/s41...
nature.com
The genomic position of an enhancer modulates bursting dynamics of the cognate promoter - Nature Genetics
We show that, in a genomic locus with minimal complexity, the distance between promoter and enhancer modulates the frequency of clustered transcriptional bursts. Thus, besides the nucleotide sequence,...
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 20/07/2026
The third chapter in our coral single-cell trilogy is here. After mapping cell type diversity in Stylophora (Levy 2021) and exploring facultative symbiosis in Oculina (Levy 2025), we now uncover cell type-specific responses to heat stress. Find out more in @xgrau.bsky.social's thread below.
biorxiv.org
Cell-resolved transcriptional responses during heat-induced coral bleaching and recovery
Coral reefs depend on an intracellular symbiosis between cnidarian hosts and photosynthetic dinoflagellates that is disrupted by ocean warming, causing coral bleaching. Yet how these responses are dis...
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Akis (Argyris) Papantonis @akispapantonis.bsky.social · 21/07/2026
Our latest is now out in @nataging.nature.com giving reason to celebrate! Led by talented Spiros Palikyras, it improves our preprint (posted 2 years ago!) dissecting the mechanism and functional consequences of CTCF clustering upon senescence commitment of human cells. www.nature.com/articles/s43...
nature.com
Senescent cells cluster CTCF on nuclear speckles to instruct an alternative splicing program - Nature Aging
Palikyras and colleagues investigate chromatin reorganization upon senescence induction, reporting that components of nuclear speckles coordinate chromatin rewiring and a senescence-associated splicin...
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Darío Lupiáñez @dariloops.bsky.social · 21/07/2026
🚨 Job Alert - Please share 🙏 Interested in 3D gene regulation in development & evolution? 🤓🧬 💥 Our lab at @cabd-upo-csic.bsky.social is expanding! ✅ 4 years fully funded PhD position 💻🧪 Experimental or computational backgrounds welcome 👇 Details below #PhDPosition #PhDOpportunity #AcademicJobs
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Darío Lupiáñez @dariloops.bsky.social · 19/07/2026
Beautiful
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Mohammed Khallaf @khallaf.bsky.social · 15/07/2026
Our new paper is out in @nature.com! We uncovered how a naked mole-rat queen 👑 controls an entire colony: a natural contraceptive scent that suppresses reproduction in other females! A remarkable mammalian parallel to bees and ants! 🐝🐜 @garyrlewin.bsky.social youtu.be/enfv3zJrWKM?...
youtu.be
Naked mole-rats are ruled by a queen: this chemical puts her in power
YouTube video by nature video
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Barbara Pernaute @bpernaute.bsky.social · 24/06/2026
🚨 Early Bird registration and abstract submission deadline for #SEBD2026 extended!! 📅 Early registration and abstract submission deadline: 10th July 📅 Scholarship application deadline: 29th June www.sebd2026.com #SEBD #DevBio @sebioldev.bsky.social 👇👇👇
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Darío Lupiáñez @dariloops.bsky.social · 26/06/2026
Dislocating the shoulders of giants… 😒
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Pablo Navarro @pablonavarrolab.bsky.social · 03/06/2026
Epigenetics means different things for different people. In this workshop we will discuss two major views anchored on transcriptional memory: chromatin vs networks. Come and share with us our excitement for the topic and the magnificent place, the Andalusian Baeza. urldefense.com/v3/__https:/...
urldefense.com
Workshop Transcriptional memory in health and disease
The idea that cells remember past states to prepare their future endeavors has split into two parallel languages that rarely converse. On one side, chromatin epigenetics defines inheritance through th...
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Toni Gabaldón @tonigabaldon.bsky.social · 10/06/2026
Our paper "Gene ancestries reveal diverse microbial associations during eukaryogenesis.” is finally out in Nature. Eukaryogenesis was likely a gradual process shaped by multiple microbial partners and virus-mediated gene transfer, rather than a single binary symbiosis. doi.org/10.1038/s415...
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Darío Lupiáñez @dariloops.bsky.social · 29/05/2026
🚨Preprint🚨 An unexpected source of sex hormones in mammalian gonads: Supporting-like cells (SLCs) 🐇 SLCs have latent steroidogenic potential and may be an ancestral lineage conserved beyond mammals Led by @ivan-barbera-aura.bsky.social & V Chung Bluetorial 1/15👇 www.biorxiv.org/content/10.6...
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Elphege Nora Lab at UCSF @elphegenoralab.bsky.social · 13/05/2026
Why can't we explain enhancer action despite 2 decades of chromosome conformation technologies? 😬 Our new study spearheaded by Leonid Mirny's group points to a flaw in our assumptions, and to a solution from physical principles By @timothyfoldes.bsky.social 💻& @karissalhansen.bsky.social 🧪 🧵👇
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MC Gambetta @mcgambetta.bsky.social · 04/05/2026
Hello all, our lab is recruiting a PhD candidate to study how 3D genome folding impacts gene regulation in development. We're located at the Center for Integrative Genomics department of the University of Lausanne, Switzerland. Please email me if interested. #PhDPosition, #PhDOpportunity
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Johanna Joyce @johannajoyce.bsky.social · 22/04/2026
What should Europe do when demand for #ERC funding keeps rising? Restrict access or invest in excellence? Please read our open letter calling for reconsideration of the ERC 2027 resubmission restrictions & for constructive alternatives that preserve openness Consider to share & sign - see below 🧪
linkedin.com
#erc | Johanna Joyce
What should Europe do when demand for its most successful frontier research programme keeps rising? Restrict access, or invest in the excellence it has created? A new open letter, spearheaded by Sara...
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Turner Lab @lab-turner.bsky.social · 21/04/2026
Join us at the Mammalian Reproduction GRC conference next August in Maine! We have a fantastic line of speakers and free slots for talks selected from abstracts. Don't miss it! www.grc.org/mammalian-re...
grc.org
2026 Mammalian Reproduction Conference GRC
The 2026 Gordon Research Conference on Mammalian Reproduction will be held in Newry, Maine. Apply today to reserve your spot.
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Niklas Kempynck @niklaskemp.bsky.social · 08/04/2026
CREsted is finally out! You can find the article, together with a summarizing Research Briefing, in thread. 🦎
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CSIC @csic.es · 11/04/2026
👩‍🔬Conoce a Patricia Altea investigadora del @cabimer.bsky.social , Premio Nacional de Investigación para Jóvenes en Medicina y Ciencias de la Salud 🔬 Destacada por sus trabajos sobre traslación de mecanismos moleculares en dianas farmacológicas
youtube.com
Patricia Altea Manzano, PNI para Jóvenes Gabriella Morreale en Medicina y Ciencias de la Salud
Patricia Altea es investigadora Ramón y Cajal y ERC Starting Grant en el Centro Andaluz de Biología Molecular y Medicina Regenerativa-CABIMER en Sevilla (cen...
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SEBD @sebioldev.bsky.social · 07/04/2026
Registration for the 19th meeting of the #SEBD is now open! Please join us at El Rompido for 3 days full of excellent #DevBio and plenty of opportunities to present your work at #SEBD2026 share.google/2llY3VlS5fQA...
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Surfin' NuRD @surfinnurd.bsky.social · 02/04/2026
Do you do a PhD on Chromatin in this cool critter? Work with @jordisolana.bsky.social @seanflynn.bsky.social, Magda Strauss and myself @lsiexeter.bsky.social on developing #singlecell #chromatin analyses to better understand pluripotency #planarians. www.exeter.ac.uk/research/ins...
Image of a planarian, from Wiki.
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SEBD @sebioldev.bsky.social · 31/03/2026
The 2026 call for the José Luis Gomez-Skarmeta award of excellence in #DevBio is now open! If you’d like to join the previous awardees @dariloops.bsky.social 2024 and @mirimiam.bsky.social and @radaiglesiaslab.bsky.social 2022, please don’t hesitate to apply to #JLGS2026
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Teresa Rayon @trayon.bsky.social · 01/04/2026
📢📢 join us for this edition of the “Quantitative biology to molecular mechanisms” EMBO workshop Gene regulation, cell dynamics & systems biology 17th - 20th November More info: s.embl.org/omx26-01-bl
s.embl.org
Quantitative biology to molecular mechanisms
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Claudio Cantù @claudiocantu81.bsky.social · 27/03/2026
Join 🇸🇪 🌞 The PALS Summer School in TranscriptOMICS 🧬 🧪 To learn about ➡️ Dynamics of immunological tissue architecture in the human gut ⬅️ by ⭐ professor Simon Koplev ⭐ from KTH @scilifelab.se @kawresearch.bsky.social @remeseiro-lab.bsky.social REGISTER NOW! www.trippus.net/summerschool...
trippus.net
Summer School 2026
Come to this beautiful Swedish inland scenario to learn the most advanced technologies to study transcriptional regulation.
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Darío Lupiáñez @dariloops.bsky.social · 23/03/2026
🏝️ In Crete island, enjoying the iconic Vertebrate Sex Determination Synposium @biol-vsd.bsky.social Thanks to the organizers for the invitation and especially to @nitzan-gonen.bsky.social & Humphrey Yao for making this meeting a reality
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Bjørt K.Kragesteen @kragesteen-lab.bsky.social · 23/03/2026
Come and join us at Karolinska Institutet! We are recruiting computational/wet-lab postdocs to the Kragesteen lab to decipher gene regulation of oxygen homeostasis using organoids/hypoxia mouse models coupled with CRISPR and sc/st omic readouts 🏔️🩸🧬🧫 Apply by 7th April: ki.varbi.com/what:job/job...
ki.varbi.com
Two postdoc postions - one computational and one wet lab – in Hypoxia Biology and Genome Regulation
Vill du bidra till medicinsk forskning av toppkvalitet? Kom och bli en del av Kragesteens grupp vid institutionen för Medicinsk Biokemi och Biofysik (MBB) på Karolinska Institutet /Biomedicum och va
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Darío Lupiáñez @dariloops.bsky.social · 19/03/2026
🤓 Important work from @dewitlab.bsky.social showing distinct functions of CTCF during development. Congrats to all authors!
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Darío Lupiáñez @dariloops.bsky.social · 16/03/2026
👇We continue accepting applications for open PhD and Postdoc positions in our lab @cabd-upo-csic.bsky.social ✉️ Get in touch if you are interested in joining our lab in the beautiful city of Seville @csic.es @pablodeolavide.upo.es
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Darío Lupiáñez @dariloops.bsky.social · 13/03/2026
✉️ Research Briefing by @mamartirenom.bsky.social and I on our recent study, where we employ a new method, METALoci, to explore the 3D regulatory landscape of sex determination. 👏Thanks to @mcgambetta.bsky.social & @dimitristypas.bsky.social for their insights. 👉 Full manuscript: rdcu.be/e5sm2
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Tineke Lenstra @tinekelenstra.bsky.social · 12/03/2026
Ever wondered how a eukaryotic transcription factor finds its specific DNA motif in the vast genome? In this preprint, we directly measured the dynamics of this search process in living cells, revealing a cooperative mechanism mediated by disordered regions. 1/10 doi.org/10.64898/202...
doi.org
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Darío Lupiáñez @dariloops.bsky.social · 12/03/2026
🐟How does the Amazon molly defy all evolutionary odds and overcome the detrimental costs of asexual reproduction?🧬 😊Glad that @rdacemel.bsky.social and I could contribute to this fascinating study, brilliantly led by Ed Ricemeyer @nature.com 👏Congrats to all authors! @cabd-upo-csic.bsky.social
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Darío Lupiáñez @dariloops.bsky.social · 06/03/2026
🚨 Job Alert - Please share! 🙏 Interested in 3D gene regulation in development & evolution? 🤓🧬 💥 Our lab at @cabd-upo-csic.bsky.social is expanding! We’re recruiting: ✅ PhD students ✅ Postdocs 💻🧪 Experimental or computational backgrounds welcome 👇 Details below
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Adriano Bolondi @adrianobolondi.bsky.social · 05/03/2026
🚨JOB ALERT🚨PLEASE SPREAD and RT Searching for a motivated Master’s student @bokelab.bsky.social @crg.eu @prbb.org to investigate how proteostasis in oocytes influences dormancy and fertility. Reach out to me (adriano.bolondi@crg.es) to join us in sunny Barcelona! See details below👇
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Joanna W Jachowicz @jjachowicz.bsky.social · 02/03/2026
If you want to explore ncRNA dynamics during mammalian development, love microscopy, and are not afaraid of transposons biology, apply‼️ We are looking for a postdoc to join our team at @imbavienna.bsky.social More details 👇🏻
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Darío Lupiáñez @dariloops.bsky.social · 24/02/2026
🤩💪 Out now! 3D regulatory hubs in sex determination With @mamartirenom.bsky.social & Capel labs, led by @imotagom.bsky.social & @jrotwitguez.bsky.social 1️⃣ METALoci – explore #3DGenome 🧬 2️⃣ Non-coding region controlling Fgf9 🧩 3️⃣ Meis genes = new key players 🌟 👉 rdcu.be/e5sm2 1/n Bluetorial 👇
rdcu.be
Chromatin spatial analysis by METALoci unveils sex-determining 3D regulatory hubs
Nature Structural & Molecular Biology - METALoci, a new three-dimensional genome computational tool, reveals a major rewiring of regulatory interactions during sex determination. By combining...
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VIB.AI @vibai.bsky.social · 13/02/2026
The @steinaerts.bsky.social lab is looking for a postdoctoral researcher to develop next-generation sequence-to-function models for glioblastoma, one of the most aggressive brain cancers. More info & how to apply 👉 vib.ai/en/opportunities#/job-descri…
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Darío Lupiáñez @dariloops.bsky.social · 12/02/2026
😃 Excited about my upcoming Zoominar on “The 3D Regulatory Genome” series 🕒Today at 4PM UK 👇Join if you want to hear about 3D chromatin organization and Evolution
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Darío Lupiáñez @dariloops.bsky.social · 03/02/2026
🚨 1/ Preprint Alert! Sex determination outcome is conserved across vertebrates (i.e. generating 2 compatible sexes) ♀️♂️ But are the cell types and gene programs behind them conserved too? 🧬 Spoiler: not really 👀 Find out in our new preprint ⬇️ www.biorxiv.org/content/10.6...
biorxiv.org
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Martínez Morales Lab @jrmarmor.bsky.social · 12/01/2026
We are looking for a Bioinformatician (both graduate and postdoctoral levels) to join our lab. Please help us spread the word about this opportunity! Applicants should submit their motivation letter, full CV and academic record to Juan R. Martínez-Morales: jrmarmor@upo.es
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