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Matteo Guardamagna

@matteoguardamagna.bsky.social
704 followers 572 following 89 posts

Circuits & manifolds in development Solberg postdoc fellow in the Moser lab ~ developmental systems neuroscience ~

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Reposted by Matteo Guardamagna
Lars Chittka @larschittka.bsky.social · 19h
Our new paper just out: Gallo, V., Bridges, A.D., Woodgate, J.L., Chittka, L. (2026) Honeybee comb geometry emerges from local redistribution of angular space by worker construction activity. npj Entomol. 1, 5. doi.org/10.1038/s444... rdcu.be/Wcv9wskwEqCa
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The Transmitter @thetransmitter.bsky.social · 06/10/2026
@deisseroth.bsky.social, Peter Hegemann and Georg Nagel won a Nobel Prize today for their contributions to optogenetics. We asked eight neuroscientists how the technique has transformed the field. bit.ly/4y5fhCH
bit.ly
Nobel Prize-winning optogenetics revolutionized neuroscience
The technique enables neuroscientists to target brain circuits with unprecedented specificity, transforming the study of memory, reward and more.
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The Transmitter @thetransmitter.bsky.social · 29/09/2026
Granule cells may allow the brain to simultaneously generalize across tasks—avoiding the need to learn each new challenge from scratch—while still capturing what makes each situation distinct. #neuroskyence By Holly Barker www.thetransmitter.org/cerebellum/c...
thetransmitter.org
Cerebellum discerns similar actions by reorienting activity
The findings provide a new perspective on how granule cells in the cerebellum help to generalize across tasks.
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Tessa Montague @tessamontague.bsky.social · 29/09/2026
I'm excited to share our new preprint: Generation of a transgenic cephalopod tinyurl.com/pc86jxz8 Cephalopods (cuttlefish, octopus & squid) are crazy critters that dynamically camouflage to their surroundings by changing the color, pattern, & texture of their skin, which they control w their brain.
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The Transmitter @thetransmitter.bsky.social · 25/09/2026
How does the developing nervous system produce so many kinds of neurons? Two studies in flies reveal transcription-factor codes linked to neurons’ lineage and birth order. By Alissa de Chassey www.thetransmitter.org/development/...
thetransmitter.org
Fly neurons carry molecular signatures of their origins
The transcription factors a <em>Drosophila</em> neuron expresses offer clues to its lineage and birth order—and ultimately how neural circuits emerge.
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Matt Lovett-Barron @mlovettbarron.bsky.social · 23/09/2026
Our lab's latest paper on the neurobiology of collective behavior is now published www.nature.com/articles/s41... This is the work of a great team in the lab - led by Jo-Hsien Yu, with Geoff Meyerhof, Jimjohn Milan, and Julia Napoli @nature.com @danionella.bsky.social
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Jake Watson @jakefwatson.bsky.social · 21/09/2026
Our new team studying human circuit function @researchmar.bsky.social is looking for a PhD student! If you or anyone you know would be interested to learn more about this, our plans, previous work, or other positions, visit humancircuits.net or get in touch! #humancircuits
Advert for a 4-year funded PhD position at Hospital del Mar Research Institute, Barcelona. Text reads: "How do human cells and synapses give rise to computations? Can we understand how they change in patient epilepsy?" Background shows a photo of the institute and a human hippocampal slice image
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Tim Vogels @tpvogels.bsky.social · 22/09/2026
Playing Pong with spikes, dancing rate networks, composite engrams & #ihngrams4engrams. The labs most recent work-in-progress, now on biorxiv.com. Stay tuned for more Pong doi.org/10.64898/202... Dale doi.org/10.64898/202... Composite engrams doi.org/10.64898/202... Ihngrams doi.org/10.64898/202...
Small sub panel of the "Dale" paper's Fig. 1 ,depicting a humanoid dancing with joy. The paper is about how motor cortex can orchestrate a rich and flexible repertoire of network dynamics for rhythmic and goal-directed movements. Computational studies have begun to illuminate the mechanistic origins of this repertoire, but a comprehensive model that can explain the emergence of both transient and self-sustained dynamics is still missing. Condruz et al. show that three simple ingredients: Dalean connectivity, stability, and nonlinear neural responses, suffice to reverse-engineer networks that produce transient, steady-state, and self-sustained periodic activity. A single dynamical principle underlies this repertoire: the interaction of non-normal amplification, inherent to Dalean networks, with neuronal nonlinearity, so to ignite and sustain multi-stable, controllable dynamics. The approach yields entire families of connectivity matrices that require no hand-tuning or learning of weights. Without fitting them to data, these networks reproduce the population-level signatures of motor cortex, implying that the richness of cortical dynamics need not be sculpted by learning, but may emerge from simple biological ingredients. But really, we just feel like dancing with JOY!!
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Caswell Barry @caswell.bsky.social · 19/09/2026
Masa's paper is out in Hippocampus. The left-right alternation of hippocampal theta sequences at T-maze choice points, much loved as a 'planning' signal, falls straight out of MEC dynamics. Well done @masahironakano.bsky.social, fun project with @clopathlab.bsky.social doi.org/10.1002/hipo.70131
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Royal Society Publishing @royalsocietypublishing.org · 20/09/2026
In order to understand early modern science, images are no less significant than words. A new #NotesandRecords special issue examines a wide range of images, from true-to-life drawings to carefully conceived schematics: royalsocietypublishing.org/rsnr/issue/8... #HistSci #HistSTM
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Sergiu P. Pasca @sergiuppasca.bsky.social · 16/09/2026
Today in Nature @nature.com, we report a new approach to studying human brain development and modeling disease in vivo. Open article link below 👇
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Matteo Guardamagna @matteoguardamagna.bsky.social · 15/09/2026
Time to reshare this awesome thread.
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The Transmitter @thetransmitter.bsky.social · 14/09/2026
Infantile amnesia is not simply a story about forgetting the past. It is an opportunity to understand how memory itself is built, write @franklandlab.bsky.social, @sjo09.bsky.social, and Nicholas Turk-Browne. #neuroskyence www.thetransmitter.org/memory/infan...
thetransmitter.org
Infant memories: Lost but not gone?
Infantile amnesia is not simply a story about forgetting the past. It is an opportunity to understand how memory itself is built.
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Dirk Gütlin @gutlin.bsky.social · 13/09/2026
Representational learning by optimization of neural manifolds in an olfactory memory network www.nature.com/articles/s41...
nature.com
Representational learning by optimization of neural manifolds in an olfactory memory network - Nature Neuroscience
Using experiments and theory, the authors examine how olfactory memories are encoded in the zebrafish olfactory cortex. They find that experience reshapes the internal map of odor space, making releva...
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Jake Quilty-Dunn @quiltydunn.bsky.social · 11/09/2026
New paper, co-authored with Justin Wood, in @cp-trendscognsci.bsky.social: The Nativist-Empiricist Debate Is Broken We argue that radical nativism and radical empiricism are compatible and, in some cases, both plausibly true. So something is wrong. 🧵 Author share link here, valid til Oct 31:
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Trends in Cognitive Sciences @cp-trendscognsci.bsky.social · 11/09/2026
Online Now: The nativist–empiricist debate is broken
dlvr.it
The nativist–empiricist debate is broken
The nativist–empiricist debate has long organized cognitive science, framing cognitive mechanisms as either innate or learned. Recent advances in controlled rearing and scalable domain-general neural networks now allow this debate to be tested with unprecedented rigor, by raising newborn animals and deep neural networks under tightly matched developmental conditions. Strikingly, when pushed to this empirical limit, the debate does not resolve: the same developmental phenomena support both radical empiricism and radical nativism. We argue that this stalemate reflects a conceptual error. The debate conflates explanatory levels and ontological orientations, with nativists emphasizing stable symbolic structures and empiricists emphasizing the subsymbolic processes that produce those structures. We propose dissolving the dichotomy within a multilevel framework of cognitive development.
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Earl K. Miller @earlkmiller.bsky.social · 10/09/2026
Neural activity is often summarized as a small number of shared patterns (low-dimensional structure). sliceTCA offers a more complete and efficient way to uncover meaningful structure in large-scale brain recordings. www.nature.com/articles/s41... #neuroscience
nature.com
Dimensionality reduction beyond neural subspaces with slice tensor component analysis - Nature Neuroscience
Neural activity does not always lie in a low-dimensional subspace. The authors extend this classic view to show that task-relevant information is distributed across multiple covariability classes and ...
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Anthony Ramnauth @philoneurosci.bsky.social · 09/09/2026
New publication from @lukesjulson.bsky.social lab and collaborators! #Neocortical long-range #inhibition promotes #cortical #synchrony and #sleep doi.org/10.1038/s415...
doi.org
Neocortical long-range inhibition promotes cortical synchrony and sleep - Nature
In mice, a sparse population of sleep-active&nbsp;long-range inhibitory neurons&nbsp;in the neocortex promote widespread&nbsp;cortical synchronization and sleep, revealing a cortical mechanism that co...
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Misha Ahrens @mishaahrens.bsky.social · 09/09/2026
Whole-body cellular activity imaging in zebrafish, headed by Virginie Ruetten @vmsruetten.bsky.social - new paper is out: www.nature.com/articles/s41...
nature.com
Imaging cellular activity across all organs reveals body-wide circuits - Nature
An imaging system developed to record cellular activity throughout the whole body of zebrafish&nbsp;captures cellular organ dynamics and identifies&nbsp;multiple distributed&nbsp;circuits.
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 08/09/2026
Spatial goals trap hippocampal replay www.biorxiv.org/content/10.64898/20…
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Daniel Reznik 🎶 @reznikdaniel.bsky.social · 08/09/2026
Now out in Hippocampus!! 📣💥 We examined anatomical inputs to the hippocampal region in six species - the tenrec, rat, marmoset, cat, macaque, and human - and found that hippocampal processing operates on fundamentally different types of information across species! (1/3) dx.doi.org/10.1002/hipo...
dx.doi.org
Phylogeny of Cortical‐Hippocampal Projections Reveals Selective Elimination of Input From Sensory Regions
The study of cross-species differences in the organization of the cerebral cortex received significant attention during the past century. However, the evolutionary principles governing changes in bra...
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begüm aydın @begumaydin.bsky.social · 08/09/2026
I'm thrilled to share that I'll join Columbia in Jan 2027 as an Assistant Professor in the Department of Genetics and Development& the Columbia Stem Cell Initiative! A long-held dream; I'm grateful for my mentors and colleagues. We'll study microbiota-ENS interactions-now hiring! theaydinlab.com
theaydinlab.com
The Aydin Lab | Laboratory of Neurodevelopmental Plasticity
The Aydin Lab at Columbia University Irving Medical Center studies how gut microbiota shape the development and plasticity of the enteric nervous system.
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The Transmitter @thetransmitter.bsky.social · 08/09/2026
When fruit flies catch a whiff of apple cider vinegar, they zigzag along the edge of the odor plume rather than traveling through the middle, new work shows. #neuroskyence By @callimcflurry.bsky.social www.thetransmitter.org/olfaction/fr...
thetransmitter.org
Fruit flies use memory to track odors
When flies encounter a tasty smell, they stroll in and out of the odor plume to keep track of it, encoding a memory of the angle they need to travel.
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Rainer Friedrich @rainerfriedrichlab.bsky.social · 08/09/2026
New preprint by Tommaso: olfactory cortex (of zebrafish) represents not only odor information but also temporal context, and these multimodal representations are sharpened after learning. And check out Tommaso's new method for 2P imaging in awake adult zebrafish! www.biorxiv.org/content/10.6...
biorxiv.org
Joint experience-dependent representations of odors and temporal context in the zebrafish homolog of piriform cortex
Intelligent behavior requires experience-dependent internal representations of relevant information. We examined representational learning in telencephalic area pDp of adult zebrafish, the homolog of ...
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Mark D Humphries @markdhumphries.bsky.social · 08/09/2026
Terrific piece from @mattperich.bsky.social on how to think about the dimensionality of neural activity Will be borrowing the excellent folding paper analogy… www.thetransmitter.org/neural-dynam...
thetransmitter.org
Dimensionality—neuroscience’s red herring?
Placing too much emphasis on a specific interpretation of dimensionality may lead neuroscience down the wrong path.
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Kevin Mitchell @wiringthebrain.bsky.social · 08/09/2026
Huge congrats to both but especially Clinton Haarlem, who won for this paper: www.nature.com/articles/s41...
nature.com
Pace of ecology drives the tempo of visual perception across the animal kingdom - Nature Ecology & Evolution
Using phylogenetic comparative methods across 237 species from disparate phyla, the authors show that species with fast-paced ecologies have higher temporal resolution of perception.
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James Briscoe @jamesbriscoe.bsky.social · 07/09/2026
New book chapter from @jcornwallscoones.bsky.social & me On GRNs as dynamical systems. Wiring diagrams alone can't predict network behaviour. Understanding developmental patterning needs quantitative, experimentally defined rules for how CREs integrate TF inputs books.google.co.uk/books?hl=en&...
books.google.co.uk
Open Questions in Developmental Biology
This book explores the enduring and emerging questions in developmental biology, offering a comprehensive overview that bridges traditional concepts with the innovative inquiries shaping future resear...
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 07/09/2026
Spatially confined dopamine from locus coeruleus axons selectively shapes hippocampal dynamics and action timing www.biorxiv.org/content/10.64898/20…
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David @dav1dcg.bsky.social · 06/09/2026
Preprint time! What does acetylcholine do in the developing visual cortex, before the eyes even open? Read it here: "Acetylcholine mediates behavioral state-dependent modulation of spontaneous activity in the developing mouse visual cortex" www.biorxiv.org/content/10.6...
biorxiv.org
Acetylcholine mediates behavioral state-dependent modulation of spontaneous activity in the developing mouse visual cortex
Synchronized and desynchronized patterns of spontaneous activity during brain development prepare cortical circuits such as the visual cortex for processing external sensory information. Yet the neuro...
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Keri Martinowich @martinowk.bsky.social · 04/09/2026
Congrats to Claudia Nguyen and the @bhadurilab.bsky.social team members on this super cool paper using human corticothalamic assembloids to reveal mechanisms by which thalamic innervation regulates corticogenesis during neurodevelopment. www.science.org/doi/10.1126/...
science.org
Thalamic NRXN1-mediated input to human cortical progenitors drives excitatory neurogenesis
The human cerebral cortex develops through coordinated signals from within the cortex and from other brain regions, including the thalamus. However, how thalamic neuronal projections influence early h...
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Angelo Forli @aforli89.bsky.social · 04/09/2026
Back from an unforgettable Whitman Fellowship at @mblscience.bsky.social - with neural recordings from the axolotl! 🧠🦎 We’re taking this forward in my lab, and I’m hiring. Interested? Get in touch! Thanks @thorlabs.bsky.social, Coherent and @open-ephys.org for loaning their equipment. More soon!
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Jim Heys @jim-heys.bsky.social · 03/09/2026
I’m very excited to share our new paper, led by the very talented Jack Bowler, a postdoc in the lab! www.nature.com/articles/s41... We all know that the way we learn something matters. But how does a training curriculum actually shape how the brain learns to solve a problem? a 🧵 1/N
nature.com
Structured experience shapes strategy learning and neural dynamics in the medial entorhinal cortex - Nature Neuroscience
The authors use recurrent neural networks to predict how structured prior experience shapes neural dynamics as mice learn flexible timing strategies during complex context-dependent behavior.
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International Society for Neuroethology @neuroethology.org · 01/09/2026
Olfactory cues are undoubtedly relevant for fruitflies seeking for rotten 🍊🍒🍐🍌. The Ruta demonstrates the neural computations of olfactory-guided vector memories in the central complex and their relevance for plume tracking. www.nature.com/articles/s41...
nature.com
A vector-based strategy for olfactory navigation in Drosophila - Nature
Using a virtual reality system, experiments in Drosophila show that flies use memory mechanisms to navigate along the boundary of an odour plume and track the source of a smell.
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The Transmitter @thetransmitter.bsky.social · 02/09/2026
In this episode of @braininspired.bsky.social, @dlevenstein.bsky.social explains how internally generated brain activity during sleep shapes our cognition, and why NeuroAI is such a powerful approach to understanding our brains. #neuroskyence www.thetransmitter.org/brain-inspir...
thetransmitter.org
What’s the role of spontaneous neural activity during sleep?
Daniel Levenstein explains how internally generated brain activity during sleep shapes our cognition, and why NeuroAI is such a powerful approach.
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Alex Kwan @alexkwan.bsky.social · 31/08/2026
Two large-scale electrophysiologyical studies of psilocybin's effects in mice, from @alleninstitute.org @torbenott.bsky.social and others. Should be a treasure trove of data for those interested in perceptual effects of #psychedelics www.biorxiv.org/content/10.6... www.biorxiv.org/content/10.6...
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Earl K. Miller @earlkmiller.bsky.social · 30/08/2026
The cortex and cerebellum split the labor: the cortex provides a stable, general-purpose movement blueprint, while the cerebellum reorients that same blueprint differently for each context Granule cells reorient cortical trajectories to separate contexts www.nature.com/articles/s41... #neuroscience
nature.com
Granule cells reorient cortical trajectories to separate contexts - Nature
Simultaneous imaging of premotor cortex and cerebellar granule cells in mice learning two skills in parallel shows that trajectories generalize in cortex but coherently reorient apart in granule cells...
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Catherine Dulac @dulaclab.bsky.social · 26/08/2026
Finally out: a very cool study by @jenbussell.bsky.social from the Axel lab--summarized here by @thetransmitter.bsky.social-- on the urge to know in mice, even without any immediate benefit for the animal
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Nikolas Karalis @nikolaskaralis.bsky.social · 23/08/2026
Last week to apply for the Neuromodulation of Neuronal Circuits Conference & Workshop! Sept. 14 - 17, 2026, Paris Brain Institute Before the conference, we are hosting a two-day theoretical and hands-on workshop for selected early career researchers. Deadline: September 1 www.paris-circuits.eu
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Kit D. Longden @theflyside.bsky.social · 21/08/2026
Very nice work setting out efference copy circuitry in fly visual system from @fleyes.bsky.social lab 👏 www.biorxiv.org/content/10.6...
biorxiv.org
Vectorial efference copy and visuomotor transformation through gap junctions
Distinguishing visual input generated by active eye movements from input due to external events is a fundamental challenge for visual processing. Here, we uncover a remarkably simple solution to this ...
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Carolina Rezaval @crezaval.bsky.social · 18/08/2026
www.nature.com/articles/s41...
nature.com
Distributed control circuits across a brain-and-cord connectome - Nature
A connectome of the brain and ventral nerve cord of an adult female fruit&nbsp;fly is reconstructed and annotated, providing an open resource that reveals neural control&nbsp;of behaviour to be distri...
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Matteo Guardamagna @matteoguardamagna.bsky.social · 14/08/2026
Really looking forward to visiting the SWC & meeting the London neuroscience community to talk development, grids, CANs, and much more 😄
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The Transmitter @thetransmitter.bsky.social · 13/08/2026
Fish open their eyes even while the circuits within are developing. A new study shows that what they see in these early stages transforms retinal interneurons and behavior. #neuroskyence By @siddhantpusdekar.bsky.social www.thetransmitter.org/developmenta...
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Bertoglio lab (FMC/UFSC) @bertogliolab.bsky.social · 12/08/2026
Developmentally defined subcircuits in the hippocampus support spatial learning www.cell.com/neuron/fullt...
cell.com
Developmentally defined subcircuits in the hippocampus support spatial learning
Huszár, Kirsanov et al. show that hippocampal CA3 and CA1 neurons born on the same day form a functional subcircuit that encodes new memories. Spatial learning engaged convergent connectivity from emb...
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Amar Sahay @amarsahay.bsky.social · 12/08/2026
Excited to share our discovery of a convergent mechanism for cognitive restoration and seizure suppression in neurodevelopment disorders in Nature (Open Access www.nature.com/articles/s41...). Led by two amazing neuroscientists, @yutzushih.bsky.social and @jasonalipio.bsky.social + a great team 1/2
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Earl K. Miller @earlkmiller.bsky.social · 12/08/2026
Neurons, especially in cortex, rarely show steady-state firing. Instead, they fire in bursts. This bursting may be key to function. Distributed burst firing mediates optimized cortical encoding of natural self-motion doi.org/10.1126/scia... #neurocience
doi.org
Distributed burst firing mediates optimized cortical encoding of natural self-motion
Burst firing in vestibular cortex enables distributed coding of natural self-motion by optimizing information transmission.
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Zhihao Zheng @zhihaozheng.bsky.social · 07/08/2026
Happy to share the CA3 dataset is published. First large-scale dense connectomics from hippocampus. First connectomic dataset imaged in @princetonneuro.bsky.social. A harbinger of many larger datasets to come (for both). doi.org/10.1038/s415... #hippocampus But my personal favorite is (1/2)
doi.org
Hippocampal CA3 connectomics reveals a gradient of mossy fiber inputs and selective feedforward inhibition onto pyramidal cells - Nature Neuroscience
The authors present a dense connectomic reconstruction of a 0.1 mm3 hippocampal CA3 volume and reveal spatial gradients, high convergence and cell-type-selective feedforward inhibition of inputs to py...
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Lorenzo Posani @lorenzoposani.com · 06/08/2026
For a neural circuit to be "specialized", does it need specialized neurons? In our new work - now out in @NatureNeuro - we address this question in the BLA, using representational geometry to propose a new population-centric way of defining circuit specialization. 🧵👇 1/
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Abraham Zelalem Vollan @azvollan.bsky.social · 06/08/2026
Now in Science: How does the brain’s navigation system allocate its limited representational resources during behavior? We found that grid cells sweep toward locations of interest, providing a potential mechanism for allocating spatial attention in the cognitive map.🧵 science.org/doi/10.1126/...
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Kevin Mitchell @wiringthebrain.bsky.social · 06/08/2026
I had the pleasure of interviewing @behrenstimb.bsky.social for @thetransmitter.bsky.social, all about the goals and approaches and successes of computational neuroscience! www.thetransmitter.org/computationa...
thetransmitter.org
Success stories from computational neuroscience
Kevin Mitchell talks with Timothy Behrens about ring attractors, the role of innate structure, and an expanded view of cognitive maps.
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The Transmitter @thetransmitter.bsky.social · 06/08/2026
For 30 years, neuroscientists have argued about whether theta sweeps are just passive sensing, or something closer to planning. So which is it? #neuroskyence By @natmesanash.bsky.social www.thetransmitter.org/memory/new-f...
thetransmitter.org
New findings begin to resolve theta sweep debate
Theta sweeps have been mired in controversy for decades, but the emerging consensus view suggests that they function in attention and goal direction.
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