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Misha Ahrens

@mishaahrens.bsky.social
1.4K followers 606 following 34 posts

Neuroscientist @Janelia, HHMI www.ahrenslab.org

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Reposted by Misha Ahrens
HHMI @hhmi-science.bsky.social · 09/09/2026
An animal’s body is in constant conversation with itself — & HHMI Janelia scientists have built a way to listen in. WHOLISTIC simultaneously records real-time activity from nearly every cell in a living larval zebrafish, a 1st step in understanding more complex bodies like ours: bit.ly/4xMR1Ww.
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Misha Ahrens @mishaahrens.bsky.social · 09/09/2026
Whole-body cellular activity imaging in zebrafish, headed by Virginie Ruetten @vmsruetten.bsky.social - new paper is out: www.nature.com/articles/s41...
nature.com
Imaging cellular activity across all organs reveals body-wide circuits - Nature
An imaging system developed to record cellular activity throughout the whole body of zebrafish captures cellular organ dynamics and identifies multiple distributed circuits.
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Ziqiang Wei @zqwei.bsky.social · 15/04/2026
How does the brain manage metabolism proactively? We show that a neuron–glia circuit helps zebrafish anticipate the delayed oxygen cost of movement and act before brain O2 drops. Excited to share our preprint on predictive oxygen regulation. www.biorxiv.org/content/10.6... #Allostasis
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Earl K. Miller @earlkmiller.bsky.social · 04/02/2026
The brain is more than spiking neurons. Astrocytes, a large fraction of cells, propagate electrical influences without spiking. And cortical neurons spike only intermittently. Electrical signals are continuous and across all cells. #neuroscience www.quantamagazine.org/once-thought...
quantamagazine.org
Once Thought To Support Neurons, Astrocytes Turn Out To Be in Charge | Quanta Magazine
New experiments reveal how astrocytes tune neuronal activity to modulate our mental and emotional states. The results suggest that neuron-only brain models, such as connectomes, leave out a crucial la...
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Martin Haesemeyer @haesemeyerlab.bsky.social · 24/10/2025
Out now in @currentbiology.bsky.social led by Kaarthik A Balakrishnan: We identify medullary circuits that represent the valence of thermal stimuli and control both long-term strategies of cold-avoidance and short term hot avoidance behaviors to enable thermoregulation. www.cell.com/current-biol...
cell.com
Behavioral and circuit principles of temperature gradient navigation
Behavioral thermoregulation is critical for survival across animals. Balakrishnan and Haesemeyer discover that thermoregulatory behavior in larval zebrafish is organized into longer-term swim modes. T...
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Reposted by Misha Ahrens
Tony Zador @tonyzador.bsky.social · 23/10/2025
Apply to the new CSHL grad program in BioAI/neuroAI! (Masters degree or equivalent required in a quantitative area such as computer science, physics, mathematics, or engineering) www.cshl.edu/phd-program/...
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Aran Nayebi @anayebi.bsky.social · 21/10/2025
Full paper (to appear in NeurIPS 2025!) here: arxiv.org/abs/2506.00138
arxiv.org
Autonomous Behavior and Whole-Brain Dynamics Emerge in Embodied Zebrafish Agents with Model-based Intrinsic Motivation
Autonomy is a hallmark of animal intelligence, enabling adaptive and intelligent behavior in complex environments without relying on external reward or task structure. Existing reinforcement learning ...
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Aran Nayebi @anayebi.bsky.social · 21/10/2025
Congratulations to my Ph.D. student Reece Keller for winning the best talk award at #CRSy25 on our project building the first task-optimized autonomous agent that predicts whole-brain data! Check out the post below for other cool talks!! Detailed summary: bsky.app/profile/reec...
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Indivisible ❌👑 @indivisible.org · 19/10/2025
This is what democracy looks like. #NoKings
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Jun Nagai @junnagai.bsky.social · 15/10/2025
Just out in Nature! “The astrocytic ensemble acts as a multiday trace to stabilize memory.” We identified astrocytic ensembles that link experiences across days to stabilize memory nature.com/articles/s41.... New astrocyte tools are openly available at Addgene: addgene.org/Jun_Nagai/. 1/8
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Stowers Institute @stowersinstitute.bsky.social · 30/09/2025
(Part 1) Hear from @hhmi_news Investigator David Stern about his research program and what he's uncovering in the lab. Stern will join the Institute in February 2026, bringing his lab and HHMI appointment to Kansas City. @hhmi.org Read more: bit.ly/4np96Fb
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Science Vs @sciencevs.bsky.social · 01/10/2025
This moment from our latest episode with science writer @edyong209.bsky.social is 🔥 We asked Ed — how do we talk up the benefits of science in the face of government cuts? He told us that's the wrong approach. 🧪 Listen wherever, or watch on Spotify 👇 open.spotify.com/episode/7Evh...
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David L. Stern @gallseeker.bsky.social · 30/09/2025
It's official! We are moving to Stowers! Very exciting opportunity to expand our studies of insect-plant interactions. We have many opportunities available in biochemistry, development, behavior, genetics, evolution, genomics, AI, and even pest control. Interested in any of these things? Reach out!
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Misha Ahrens @mishaahrens.bsky.social · 16/09/2025
New very cool work from the Yaksi lab: Hierarchical processing of sensory information across topographically organized thalamocortical-like circuits in the zebrafish brain www.biorxiv.org/content/10.1...
biorxiv.org
Hierarchical processing of sensory information across topographically organized thalamocortical-like circuits in the zebrafish brain
Thalamocortical projections contribute to the spatial organization and functional hierarchies of the mammalian cortex. Primary sensory cortices receive topographically segregated information from firs...
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Philip Hubbard @philiphubbard.bsky.social · 16/09/2025
Come to #HHMIJanelia to work on the frontiers of AI and biology. Apply now for an AI Engineer position working on protein biosensors: hhmi.wd1.myworkdayjobs.com/en-US/Extern... More openings coming soon. Interesting AI is widespread at Janelia, like this diffusion model from Larissa Heinrich.
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Mark Histed @markhisted.org · 14/09/2025
Amazing. Hopefully they replicate NIH/NSF’s peer review process, which is the core magic of what makes US science work so well. While I’m at it, the abundance people are wrong about NIH not being high-risk. So is Joe Lonsdale: he’s naive, at best, about US science.
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Dr. Lucky Tran @luckytran.com · 13/09/2025
California is devising a plan to create their own National Institutes of Health to counter federal cuts to science research.
nytimes.com
California’s $23 Billion Plan to Restore Federal Cuts to Scientific Research
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Misha Ahrens @mishaahrens.bsky.social · 08/09/2025
Preprint - Excited to present WHOLISTIC, which extends the concept of whole-brain functional imaging to the entire body. Pioneering work by incredibly talented Virginia Ruetten @vmsruetten.bsky.social, this platform reveals whole-organism cellular dynamics in vivo. www.biorxiv.org/content/10.1...
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Janelia Research Campus @hhmijanelia.bsky.social · 09/09/2025
Become a Theory Fellow at Janelia. 🔍 Use computation & theory to tackle biological problems. 🖥️ Leverage state-of-the-art computational infrastructure 🤝 Collaborate across scientific disciplines Apply by Nov. 3 @ janelia.link/theoryfellowprogram
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mchurchland.bsky.social @mchurchland.bsky.social · 08/09/2025
Of potential interest to those keen on motor control and/or multi-task networks. Congrats to Elom and Eric. www.biorxiv.org/content/10.1...
biorxiv.org
Motor cortex flexibly deploys a high-dimensional repertoire of subskills
Skilled movement often requires flexibly combining multiple subskills, each requiring dedicated control strategies and underlying computations. How the motor system achieves such versatility remains u...
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Virginie M. S. Ruetten @vmsruetten.bsky.social · 08/09/2025
Made possible only by the unique environment and amazing community at Janelia and the Gatsby. @hhmijanelia.bsky.social @gatsbyucl.bsky.social Feedback, ideas, or requests for transgenic lines, protocols, and code are warmly welcome!
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Virginie M. S. Ruetten @vmsruetten.bsky.social · 08/09/2025
Thanks Misha for the shout-out! It has been a truly mind-opening journey. WHOLISTIC is one step towards whole-organism neuroscience and a true physiological observatory - with extensions on the way! I am continually amazed by what the data reveals - so much remains to be discovered and mined.
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Misha Ahrens @mishaahrens.bsky.social · 08/09/2025
Preprint - Excited to present WHOLISTIC, which extends the concept of whole-brain functional imaging to the entire body. Pioneering work by incredibly talented Virginia Ruetten @vmsruetten.bsky.social, this platform reveals whole-organism cellular dynamics in vivo. www.biorxiv.org/content/10.1...
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Reposted by Misha Ahrens
Janelia Research Campus @hhmijanelia.bsky.social · 05/08/2025
✨ We’re #hiring Theory Fellows!✨ Janelia is recruiting early-career scientists to join our collaborative research environment and use #computation & #theory to tackle bold questions in #biology. 🔗 Apply by Nov. 3 👉 janelia.link/theoryfellow... @hhmi.org
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The Transmitter @thetransmitter.bsky.social · 27/06/2025
Beyond housekeeping duties, astrocytes also coordinate complex computational tasks during modulation, expanding their role in the brain. By @claudia-lopez.bsky.social #neuroskyence www.thetransmitter.org/astrocytes/a...
thetransmitter.org
Astrocytes sense neuromodulators to orchestrate neuronal activity and shape behavior
Astrocytes serve as crucial mediators of neuromodulatory processes previously attributed to direct communication between neurons, four new studies show.
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Reposted by Misha Ahrens
Janelia Research Campus @hhmijanelia.bsky.social · 20/06/2025
🧠 Janelia researchers are helping to uncover how neuromodulators reach neurons & revealing a significant role for astrolia in neuromodulation – highlighting the importance of including info about non-neuronal cells in research into how the brain works. www.janelia.org/news/on-the-...
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Zebrafish Rock! @zebrafishrock.bsky.social · 18/06/2025
Highlights new work from @mishaahrens.bsky.social et al. 🧠 🐟 🔗 to manuscript: www.sciencedirect.com/science/arti...
sciencedirect.com
Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning
As animals adapt to new situations, neuromodulation is a potent way to alter behavior, yet mechanisms by which neuromodulatory nuclei compute during b…
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Reposted by Misha Ahrens
Janelia Research Campus @hhmijanelia.bsky.social · 18/06/2025
🐟 New research probing the inner workings of neuromodulation in zebrafish could help scientists better understand how the brain enables flexible behavior and provide insight into mood disorders like depression. 🔗 www.janelia.org/news/new-res...
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Ken Miller @kenmiller.bsky.social · 13/06/2025
U.S. people: Be sure to turn out for No Kings Day protests tomorrow (Sat June 14) afternoon, google the one nearest you. With all that's happening on so many fronts, not least the movements toward authoritarian martial law amidst widespread raids of working people, it matters now more than ever.
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HHMI @hhmi-science.bsky.social · 13/06/2025
Researchers at @hhmijanelia.bsky.social are decoding how neurons carry out computations carefully calibrated to an animal’s movement and environment to precisely regulate the release of neuromodulators—chemicals that fine-tune brain activity and enable us to adapt to new situations.
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Janelia Research Campus @hhmijanelia.bsky.social · 11/06/2025
🥼Researchers, led by @mishaahrens.bsky.social, Ziqiang Wei & Takashi Kawashima, are decoding how neurons carry out computations carefully calibrated to an animal’s movement & environment to precisely regulate the release of neuromodulators. www.janelia.org/news/new-res...
janelia.org
New research provides insights into the inner workings of neuromodulation
Researchers at HHMI’s Janelia Research Campus are decoding how neurons carry out computations carefully calibrated to an animal’s movement and environment to precisely regulate the release of neuromod...
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Reposted by Misha Ahrens
Reece Keller @reecedkeller.bsky.social · 05/06/2025
1/ I'm excited to share recent results from my first collaboration with the amazing @anayebi.bsky.social and @leokoz8.bsky.social ! We show how autonomous behavior and whole-brain dynamics emerge in embodied agents with intrinsic motivation driven by world models.
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Reece Keller @reecedkeller.bsky.social · 05/06/2025
5/ First, we construct two environments extending the dm-control suite: one that captures the basic physics of zebrafish ecology (reactive fluid forces and drifting currents), and one that replicates the head-fixed experimental protocol in Yu Mu and @mishaahrens.bsky.social et al. 2019.
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Michał Januszewski @michalwj.bsky.social · 22/05/2025
Wouldn't it be great if we could not only image large connectomic volumes but also completely reconstruct them? And if a whole mouse brain project didn't cost billions? With the PATHFINDER preprint (www.biorxiv.org/content/10.1...), we preview a future where it doesn't have to.
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Harvard_MCB @harvardmcb.bsky.social · 16/05/2025
New Stars in Neural Circuits: Astrocytes Guide Brain State Changes 🧪🧠 #AcademicSky www.mcb.harvard.edu/department/n... @alexbchen.bsky.social @marcduque.bsky.social @mishaahrens.bsky.social @rachellegaudet.bsky.social @dulaclab.bsky.social @harvardbrainsci.bsky.social @scinews.bsky.social
mcb.harvard.edu
New Stars in Neural Circuits: Astrocytes Guide Brain State Changes - Harvard University - Department of Molecular & Cellular Biology
Astrocytes, the most abundant non-neuronal cell type in the brain, have traditionally been thought of as passive supporters of neuronal circuits. However, in recent years, work from many […]
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Alex Chen @alexbchen.bsky.social · 16/05/2025
Excited to share that the astrocyte-centered half of my thesis work is now out @science.org ! With @mishaahrens.bsky.social and @marcduque.bsky.social science.org/doi/10.1126/... 1/8
science.org
Norepinephrine changes behavioral state through astroglial purinergic signaling
Both neurons and glia communicate through diffusible neuromodulators; however, how neuron-glial interactions in such neuromodulatory networks influence circuit computation and behavior is unclear. Dur...
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Janelia Research Campus @hhmijanelia.bsky.social · 16/05/2025
✨Once thought to play a supporting function in the brain, new research led by @alexbchen.bsky.social & @mishaahrens.bsky.social shows non-neuronal astroglial cells perform a leading role in regulating the activity of neurons and their connections. 🧠 🔗 www.janelia.org/news/on-the-...
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Max Planck Florida Institute for Neuroscience @mpfneuro.bsky.social · 03/04/2025
What a way to kick off our grad student NeuroMEETS series! Thank you @alexbchen.bsky.social for visiting and sharing your research into the mechanisms of behavioral switching during frustration and futility-induced giving up. 🔎 Want to learn how you can be part of NeuroMEETS? buff.ly/YG2udIf
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Georg Keller @georgkeller.bsky.social · 13/03/2025
Consistent with the work of @jeremiahycohen.bsky.social and @mishaahrens.bsky.social labs, we find that serotonin axons in mouse visual cortex appear to signal recent visuomotor uncertainty (and unlike norepinephrine axons, they have no visuomotor mismatch responses) www.biorxiv.org/content/10.1...
biorxiv.org
Activity in serotonergic axons in visuomotor areas of cortex is modulated by the recent history of visuomotor coupling
Visuomotor experience is necessary for the development of normal function of visual cortex (Attinger et al., 2017) and likely establishes a balance between movement-related predictions and sensory sig...
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HHMI @hhmi-science.bsky.social · 27/02/2025
Larval zebrafish are an invaluable tool for neuroscientists, who use the tiny, transparent fish to probe how the brain controls behavior, but it’s been difficult for scientists to study learning in these developing vertebrates – an important part of understanding how the brain works.
Schematic of experiment and behavioral effect of conditioned robot avoidance. Credit: Zocchi et al.
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Janelia Research Campus @hhmijanelia.bsky.social · 20/02/2025
🤖A novel system developed by Postdoc Dhruv Zocchi, Sr. Group Leader @mishaahrens.bsky.social & collaborators that chases larval zebrafish around an arena with predator robots is enabling scientists to understand how these days-old fish quickly learn in the real world. 🐟 🔗 hhmi.news/4bcKcDu
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Yulong Li Lab @yulonglilab.bsky.social · 24/12/2024
First post on Bluesky!✨ (1/7) Far-red dopamine sensor is coming! Excited to introduce our chemigenetic DA sensor, HaloDA1.0! #Dopamine #FarRedSensors, #GRAB www.biorxiv.org/content/10.1...
biorxiv.org
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Kira Poskanzer @kiraposkanzer.bsky.social · 21/12/2024
And here’s a favorite from the @mishaahrens.bsky.social lab www.cell.com/cell/fulltex...
cell.com
Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior
Whole-brain imaging in virtual-reality-immersed zebrafish reveals that failed swim attempts are detected by noradrenergic neurons, which drive glial cells that accumulate calcium until they trigger the suppression of further futile attempts.
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Kira Poskanzer @kiraposkanzer.bsky.social · 21/12/2024
We (and lots of others) are recording astrocytes in vivo during behavior. Here’s one of our recent ones: www.nature.com/articles/s41...
nature.com
Norepinephrine links astrocytic activity to regulation of cortical state - Nature Neuroscience
The authors show that norepinephrine signaling to astrocytes in the mouse visual cortex acts as a separate neuromodulatory pathway that regulates the effects of arousal on neuronal activity and cortic...
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Brendonowicz (Wears an N95) ☭🩺 #MedicareForAll @brendonowicz.cryptoanarchy.network · 20/12/2024
OK, just saw this paper and I absolutely love the clear, straightforward terminology here: "Brief exposure to ketamine causes long-term suppression of giving up" I will be using that frequently in the clinic.
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Portugues Lab @portugueslab.bsky.social · 20/12/2024
1/3 How does visual input affect the heading direction (HD) network? In our latest lab preprint, Ryosuke presents "visual landmarks" to larval zebrafish and shows that the HD network tethers to the visual environment. The experiments are again inspired by the beautiful recent work in Drosophila.
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Wobbologist @wobbologist.bsky.social · 19/12/2024
"Development of neural circuits for social motion perception in schooling fish" #fish #schooling #sensory #visual #GlassFish 🧪 🦑 🐟 🧠 www.cell.com/current-biol...
cell.com
Development of neural circuits for social motion perception in schooling fish
Zada and Schulze et al. study visually based schooling of the glassfish Danionella cerebrum and characterize the development of this collective behavior. By imaging brain-wide neural activity, they discover that midbrain neurons responsive to the shape of moving conspecifics emerge with the experience-dependent development of schooling behavior.
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John Tuthill @tuthill.bsky.social · 19/12/2024
my lab (www.tuthill.casa) at UW is hiring a research assistant/tech. basic scope is to apply machine learning/computer vision tools to measure and model 3D animal behavior and mechanics. we are a diverse, collaborative, curiosity-driven group. Apply: uwhires.admin.washington.edu/ENG/Candidat...
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Gizem Özdil @gzmozd.bsky.social · 18/12/2024
🧵 Ever seen a fly perform a full self-care ritual? 🪰 They meticulously rub their head and clean their antennae, ensuring every speck of dirt is gone. But how do they coordinate all those tiny body parts so seamlessly?👇
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