Sign in

Krzysztof Mikołajczyk

@kmikolajczyk.bsky.social
341 followers 624 following 2 posts

Assistant professor | PhD | Hirszfeld Institute of Immunology and Experimental Therapy | #glycobiology | #blood | #glycosyltransferases | #glycotime | #EVs

PostsRepliesMedia
Reposted by Krzysztof Mikołajczyk
Trends in Cell Biology @cp-trendscellbio.bsky.social · 29/08/2026
Remaking an exit: dynamic regulation of ER exit sites by post-translational modifications
dlvr.it
Remaking an exit: dynamic regulation of ER exit sites by post-translational modifications
Endoplasmic reticulum exit sites (ERES) are dynamic platforms that coordinate not only protein trafficking but also protein quality control and signaling functions. ERES size, composition, architecture, interactions, and activity must be precisely remodeled in response to myriad pathophysiological cues to finely tune cellular homeostasis. However, the molecular mechanisms underlying this regulation remain incompletely understood. Coat protein complex II (COPII) mediates many ERES functions, and its subunits and client cargos are subject to spatiotemporal regulation by post-translational modifications (PTMs) that modulate ERES assembly, cargo selection, and inter-organelle communication. In this article, we review recent advances in understanding how PTMs control the organization and functional versatility of ERES and the COPII system.
033
Reposted by Krzysztof Mikołajczyk
Nature @nature.com · 27/08/2026
Structures of a protein used to make crucial sugar-carrying lipids uncover a surprising reaction mechanism and a built-in brake that emerged during primate evolution go.nature.com/3UF85PA
go.nature.com
Evolutionary mystery revealed by structures of a key enzyme in the synthesis of glycolipids
Structures of a protein used to make crucial sugar-carrying lipids uncover a surprising reaction mechanism and a built-in brake that emerged during primate evolution.
0263
Reposted by Krzysztof Mikołajczyk
André Nadler @nadlerlab.bsky.social · 06/08/2026
I've been waiting for this to come out - the best papers combine really simple ideas with excellent execution. And just like that there's a metabolic label for imaging one of the two most common phospholipid classes in mammalian cells. Congratulations!
1154
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 06/08/2026
@kmikolajczyk.bsky.social demonstrates small extracellular vesicles derived from Caco-2 and HEK293T cells and functionalized with Gb3 trisaccharide (Galα1→4Galβ1→4Glc) as potent neutralizers of Shiga toxins. #glycotime tinyurl.com/29y8n5yc
152
Reposted by Krzysztof Mikołajczyk
Brett Garabedian, PhD @brettgarabedian.bsky.social · 15/07/2026
www.nature.com/articles/s41...
nature.com
Targeting Siglec-engaging immunosuppressive sialoglycans to suppress prostate cancer bone metastasis - British Journal of Cancer
British Journal of Cancer - Targeting Siglec-engaging immunosuppressive sialoglycans to suppress prostate cancer bone metastasis
054
Reposted by Krzysztof Mikołajczyk
Rémi Hatinguais @remicillin.bsky.social · 15/07/2026
So happy our review is finally out in @natcancer.nature.com! Many glycans were mistreated in the making of the figures, although these were all caught by my co-authors, the proper glycobiologists #glycotime
rdcu.be
Immune implications and therapeutic opportunities of tumor glycosylation
Nature Cancer - In this Review, van Vliet and colleagues provide an overview of aberrant glycosylation as a hallmark of cancer cells, focusing on its impact for cancer immunity and therapeutic...
1125
Reposted by Krzysztof Mikołajczyk
bioRxivpreprint @biorxivpreprint.bsky.social · 27/04/2026
Surface functionalization of small extracellular vesicles derived from Caco-2 and HEK293T cells in the neutralization of Shiga toxin 1 subunit B www.biorxiv.org/content/10.64898/20…
001
Reposted by Krzysztof Mikołajczyk
Komander Lab @komanderlab.bsky.social · 24/04/2026
Check out our latest paper on the ubiquitination of glycogen in cells and tissues! Congratulations to Marco Jochem (@marcojochem.bsky.social) and Simon Cobbold for leading this study and to collaborators @craigagoodman1.bsky.social, @pgregorevic.bsky.social, Kai Hofmann and Thomas Hermanns.
03619
Reposted by Krzysztof Mikołajczyk
Edward Moh @mredwardmoh.bsky.social · 08/04/2026
As part of a special issue on "Glycosyltransferases", we are pleased that the editors allowed our glycosidase focused mini perspective data exploration article of the Allen Brain Cell Atlas to be part of the collection 😁 #glycotime @alleninstitute.org www.sciencedirect.com/science/arti...
sciencedirect.com
Modulation of glycosylation in the brain: A single-cell exploration of glycosidases using the Allen Brain Cell Atlas
The mammalian brain is enveloped in a dense, charge-rich glycocalyx that orchestrates cell signalling, migration, and synaptic stability. Transcriptom…
152
Reposted by Krzysztof Mikołajczyk
Ordo Fraterna Fibonacci @ordofibonacci.bsky.social · 09/12/2025
A self-assembled nano micelle-exosome with high selectivity and penetrability achieves precise intracartilage lipid delivery Science Advances www.science.org/doi/10.1126/...
science.org
A self-assembled nano micelle-exosome with high selectivity and penetrability achieves precise intracartilage lipid delivery
An efficient, lesion-responsive micelle-exosome system was designed for intracartilage drug delivery.
011
Reposted by Krzysztof Mikołajczyk
Cell Transplantation @celltransplant1992.bsky.social · 27/03/2026
The use of therapeutic exosomes for in vivo wound healing doi.org/10.1177/0963... #exosome #wound #EV #diabetes @journals.sagepub.com
032
Reposted by Krzysztof Mikołajczyk
Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 04/12/2025
Gut mucin fucosylation dictates the entry of botulinum toxin complexes www.nature.com/articles/s41...
nature.com
Gut mucin fucosylation dictates the entry of botulinum toxin complexes - Nature Communications
Botulinum toxins vary in oral toxicity, but the reasons are unclear. Here, the authors show that the differences can be due to variations in one of the toxin’s components, the hemagglutinin complex, w...
096
Reposted by Krzysztof Mikołajczyk
Nature Biotechnology @natbiotech.nature.com · 23/10/2025
Elucidating lipid nanoparticle properties and structure through biophysical analyses - @guptapenn.bsky.social @pennengineering.bsky.social @pennmedicine.bsky.social go.nature.com/4oTt639
go.nature.com
Elucidating lipid nanoparticle properties and structure through biophysical analyses - Nature Biotechnology
Guidance for optimizing lipid nanoparticle formulations is derived using sophisticated biophysical techniques.
2103
Reposted by Krzysztof Mikołajczyk
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 19/08/2025
Another piece of the #glycoRNA puzzle revealed by @raflynn5.bsky.social and @vijayrathinam.bsky.social!! RNAs with modified base acp3U activate TLR3/7, but not when acp3U is N-glycosylated. This is how cell surface/secreted glycoRNAs avoid stimulating autoimmunity. www.nature.com/articles/s41...
nature.com
RNA N-glycosylation enables immune evasion and homeostatic efferocytosis - Nature
N-glycans on glycoRNAs prevent innate immune sensing of endogenous small RNAs, and the natural mechanism they use demonstrates how glycoRNAs exist on the cell surface and in the endosomal network with...
06717
Reposted by Krzysztof Mikołajczyk
Iain Wilson @iainwilsonwien.bsky.social · 05/08/2025
Using #Caenorhabditis genes to reengineer insect cells to better mimic nematode glycosylation academic.oup.com/glycob/advan...
academic.oup.com
Glycoengineering of nematode antigens using insect cells: a promising approach for producing bioactive vaccine antigens of the barber’s pole worm Haemonchus contortus
Abstract. The H11 antigens, located on the intestinal microvilli of Haemonchus contortus, comprise a group of homologous aminopeptidases essential for the
095
Reposted by Krzysztof Mikołajczyk
Nature @nature.com · 03/08/2025
Scientists have mapped individual sugar molecules on the surface of cells at a resolution once thought to be impossible for light microscopes go.nature.com/40I9Ewv
go.nature.com
Cell's sugar coating mapped at below-nanometre resolution
Nature - Super-resolution technique works with off-the-shelf optical microscopes.
19119
Reposted by Krzysztof Mikołajczyk
bioRxivpreprint @biorxivpreprint.bsky.social · 10/06/2025
Expression of a human Gb3/CD77 synthase in insect and human cells: comparison of activity and glycosylation www.biorxiv.org/content/10.1101/202…
011
Reposted by Krzysztof Mikołajczyk
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 05/06/2025
More insights into #glycoRNA, this time found within exosomes! www.nature.com/articles/s41...
nature.com
Extracellular exosomal RNAs are glyco-modified - Nature Cell Biology
Sharma, Jiao and colleagues report glycosylation of small RNAs within exosomes and propose a glycosylation-dependent mechanism for RNA targeting into exosomes, which may influence intercellular commun...
27427
Reposted by Krzysztof Mikołajczyk
Nikolai Slavov @slavov-n.bsky.social · 05/06/2025
A case study on the challenges of evaluating AI predictions in biology and the implications for published results. 1/2 rachel.fast.ai/posts/2025-0...
rachel.fast.ai
Rachel Thomas, PhD - Deep learning gets the glory, deep fact checking gets ignored
an AI researcher going back to school for immunology
12912
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 03/06/2025
Marcin Czerwinski Interesting review about glycoRNAs as immune regulators. tinyurl.com/mvutz9ye #glycotime
064
Krzysztof Mikołajczyk @kmikolajczyk.bsky.social · 04/06/2025
An interesting study on archaeal extracellular vesicles (AEVs) in the human gastrointestinal tract: opening new avenues for microbiome-host interaction research. shorturl.at/dpn4v
shorturl.at
Proteomic and metabolomic profiling of extracellular vesicles produced by human gut archaea - Nature Communications
The composition and potential roles of extracellular vesicles released by gut archaea are poorly understood. Here, Weinberger et al. show that extracellular vesicles produced by human gut-derived meth...
020
Reposted by Krzysztof Mikołajczyk
Elisa Fadda @elisafadda.bsky.social · 22/05/2025
Yeyyyy!! The preprint for Glycam-Web is out! ⬇️ Super congrats @olivercgrant.bsky.social and all! Glycam-Web is a 🔝 complex carbohydrate builder, very accurate and intuitive while fast. We use it *ALL the time*, so I am delighted that now I can cite it properly 👍🤩 doi.org/10.1101/2025...
doi.org
Generating 3D Models of Carbohydrates with GLYCAM-Web
The carbohydrate 3D structure-prediction tools (builders) at GLYCAM-Web ([glycam.org][1]) are widely used for generating experimentally-consistent 3D structures of oligosaccharides suitable for data i...
1196
Reposted by Krzysztof Mikołajczyk
Gina DeNicola @ginadenicola.bsky.social · 12/05/2025
MALDI imaging of lipids, metabolites and glycans all on the same section! From Ramon Sun and colleagues. www.nature.com/articles/s41...
nature.com
Spatial mapping of the brain metabolome lipidome and glycome - Nature Communications
Clarke et al. presents a framework for spatial analysis of the metabolome, lipidome, and glycome from a single tissue section using mass spectrometry imaging. Applying this approach, they revealed reg...
0204
Reposted by Krzysztof Mikołajczyk
Mike Lange @mikelangelipid.bsky.social · 08/05/2025
Fantastic new study from Raphael Rodriguez' lab shows that induced proximity concepts can be used to induce Ferroptosis! Inducing proximity of lysosomal iron and lipids induces lipid peroxidation! What a cool concept! Have a look at our News/Views with @olzmannlab.bsky.social shorturl.at/cbc8D
shorturl.at
Lipid-degrading small molecule kills cancer cells by ferroptosis
A molecule designed to activate iron locked up in organelles called lysosomes and thereby induce cell death might offer a way to tackle treatment-resistant cancer.
1196
Reposted by Krzysztof Mikołajczyk
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 25/04/2025
Check it out - amazing new work by @raflynn5.bsky.social and Kostas Tzelepis labs, discovery of a cell surface RNA/glycoRNA binding protein that is also a cancer antigen, new target for antibody therapy! www.nature.com/articles/s41...
nature.com
Treatment of acute myeloid leukemia models by targeting a cell surface RNA-binding protein - Nature Biotechnology
An RNA-binding protein on leukemia cells provides an effective target in mouse models.
112133
Reposted by Krzysztof Mikołajczyk
Elisa Fadda @elisafadda.bsky.social · 25/04/2025
"Our LPD-3 complex structural data reveal protein–lipid interactions that suggest a model for how the native LPD-3 complex mediates bulk lipid transport and provides a foundation for mechanistic studies of bridge-like lipid transport proteins (BLTPs)." 🤯🤯😍 www.nature.com/articles/s41...
nature.com
Structural basis of lipid transfer by a bridge-like lipid-transfer protein - Nature
The LPD-3 complex structure reveals protein–lipid interactions that suggest a model for how the native LPD-3 complex mediates bulk lipid transport and provides a foundation for mechanistic studies of ...
12211
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 26/03/2025
Biallelic loss of SEC24C proteins (elements of COP IIcoat protein complex II which participate in intracellular trafficking) causes i.a. primary microcephaly, brain anomalies, epilepsy and hearing loss, but also deregulation of N-glycosylation. New type of CDG? tinyurl.com/3cyfyhua #glycotime
031
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 30/03/2025
Great review about gene therapy for hemophilia – from basic science to first approvals of “One-and-Done” therapies. Must-read! tinyurl.com/52jnjzcp
151
Reposted by Krzysztof Mikołajczyk
SFG @sfglycobiology.bsky.social · 03/03/2025
Shi et al show ⬇️ that mucin-domain glycoproteins in the brain endothelial glycocalyx are highly dysregulated during ageing and neurodegenerative disease, leading to severe perturbations of the BBB function #glycotime at its best! 💥🧠🍬🎉 doi.org/10.1038/s415...
doi.org
Glycocalyx dysregulation impairs blood–brain barrier in ageing and disease - Nature
Disruption of mucin-domain glycoprotein expression and function in the endothelial glycocalyx are associated with ageing and Alzheimer’s disease, leading to dysregulated blood–brain barrier function.
0105
Reposted by Krzysztof Mikołajczyk
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 21/02/2025
Check out our web tool for searching for interactors of your favorite cell surface protein, developed by undergrad Pinyu Liao and postdoc postdoc Brendan Floyd @stanford-chemh.bsky.social cellsurfacemap.org
cellsurfacemap.org
Cell Surface Map
Cell Surface Map - Distribution and organization data on immune cell surface proteins
015537
Reposted by Krzysztof Mikołajczyk
Lorenzo Albertazzi @fluorenzo.bsky.social · 21/02/2025
Our Lectin-PAINT work is out! A super-resolution approach to study membrane-exposed glycans with nm resolution and in live cells. Multiplexed 8-colors imaging mapping heterogeneity in "glycotype" with single molecule resolution. Fantastic work of our Marrit! #Glycotime www.nature.com/articles/s42...
nature.com
Multiplexed Lectin-PAINT super-resolution microscopy enables cell glycotyping - Communications Biology
A super-resolution method for single-molecule detection and tracking of glycans on the surface of living cells is developed. Glycan’s abundance and mobility are used to explore differences in glycosyl...
0235
Reposted by Krzysztof Mikołajczyk
Chris Ashwood @cashwood.proteaglyco.com · 21/02/2025
Our new paper in print describes a new approach: release and analysis of N-glycans in less than 24 hours. A perfect approach for those that are glycan-curious as it does not require changing any of your proteomics buffers! 1/5 #glycotime #teammassspec pubs.acs.org/doi/10.1021/...
pubs.acs.org
Swift Universal Glycan Acquisition (SUGA) Enables Quantitative Glycan Profiling across Diverse Sample Types
The ability to rapidly analyze complex mixtures of glycans derived from glycoproteins is important, but techniques are often laborious and require multiple glycan derivatization steps. Here, we descri...
24915
Reposted by Krzysztof Mikołajczyk
Reto Fiolka @retof.bsky.social · 12/02/2025
The self-driving multiscale microscope from @daetwylerstephan.bsky.social is out. It can image an entire zebrafish embryo longitudinally and follow a volume of interest over time with high resolution. We used it to study cancer-immune cell interactions. www.nature.com/articles/s41...
nature.com
Imaging of cellular dynamics from a whole organism to subcellular scale with self-driving, multiscale microscopy
Nature Methods - A self-driving multiresolution light-sheet microscope enables the simultaneous observation and quantification of cellular and subcellular dynamics in the context of intact and...
511941
Reposted by Krzysztof Mikołajczyk
Karim Almahayni 🍉 @karimalmahayni.bsky.social · 11/02/2025
ÅNGSTRÖM-RESOLUTION IMAGING OF CELL-SURFACE GLYCANS 🍬🍭🔬 For the first time, we’re able to study the molecular architecture of the glycocalyx at single-sugar resolution—a longstanding challenge in glycobiology! #glycotime Preprint and #bluetorial below!!
12910
Reposted by Krzysztof Mikołajczyk
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 10/02/2025
This is an amazing achievement - angstrom scale imagine of glycan molecules, what a great time for #glycotime. Congrats Leonhard Möckl! www.biorxiv.org/content/10.1...
biorxiv.org
Angstrom-resolution imaging of cell-surface glycans
Glycobiology is rooted in the study of monosaccharides, Angstrom-sized molecules that are the building blocks of intricate glycosylation patterns. Glycosylated biomolecules form the glycocalyx, a dens...
19419
Reposted by Krzysztof Mikołajczyk
Di Jiang @dijiang319.bsky.social · 08/02/2025
🧬🧪Protein codes promote selective subcellular compartmentalization | Science www.science.org/doi/10.1126/... Henry Kilgore @itamarchinn.bsky.social @pgmikhael.bsky.social Ilan Mitnikov, et al. @aihealthmit.bsky.social @whiteheadinstitute.bsky.social @mitofficial.bsky.social
science.org
Protein codes promote selective subcellular compartmentalization
Cells have evolved mechanisms to distribute ~10 billion protein molecules to subcellular compartments where diverse proteins involved in shared functions must assemble. Here, we demonstrate that prote...
38538
Reposted by Krzysztof Mikołajczyk
Savitski Lab @savitski-lab.bsky.social · 10/02/2025
We are very happy to present our work on N-glycoproteomics!🍬 Our method enables the selective enrichment and precise quantification of intact N-glycopeptides to explore the dynamics of glycosylation microheterogeneity. www.nature.com/articles/s41...
14019
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 22/01/2025
2′-Fucosyllactose inhibits human norovirus replication in human intestinal enteroids but not in infant jejunal enteroids that have significantly lower expression of α1–2-fucosylated glycans @sashi-ramani.bsky.social bit.ly/4h45vsG #glycotime
163
Reposted by Krzysztof Mikołajczyk
Matthew Macauley @siglecdude.bsky.social · 22/01/2025
Our latest work on Siglec binding to sulfated glycans. Great help: @khookh.bsky.social, @pengwu.bsky.social ,@raflynn5.bsky.social. Fom 1st PhD graduate of the lab (Jaesoo Jung) and help from Edward, Zeinab, Jhon, Kelli, @tayloregray.bsky.social, and Chris from my lab. pubs.acs.org/doi/10.1021/...
pubs.acs.org
Understanding the Glycosylation Pathways Involved in the Biosynthesis of the Sulfated Glycan Ligands for Siglecs
Carbohydrate sulfation plays a pivotal role in modulating the strength of Siglec–glycan interactions. Recently, new aspects of Siglec binding to sulfated cell surface carbohydrates have been discovere...
24413
Reposted by Krzysztof Mikołajczyk
Agata Starosta @agatastarosta.bsky.social · 03/01/2025
New year, new paper from my group! Ribosomes translocation into the spore of Bacillus subtilis is highly organised and requires peptidoglycan rearrangements Funded by @FNP_org_pl @EMBO_YIP performed at @IBBPAS #subtiwiki www.nature.com/articles/s41...
03016
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 08/01/2025
Synthesis of the hard-to-obtain 0-series of ganglioside glycans: introduction of sialic acid overcomes the limitation of substrate specificity of Campylobacter jejuni β1–4-N acetylgalactosaminyltransferase. tinyurl.com/yvc8w93b #glycotime
042
Reposted by Krzysztof Mikołajczyk
Gitta Coaker @gittacoaker.bsky.social · 13/01/2025
www.biorxiv.org/content/10.1...
biorxiv.org
A single pathogen-secreted protein reprograms plants for drought resilience
Climate change-enforced drought stress conditions and diseases caused by pathogens often co-occur and represent one of the greatest challenges in plant science. Wilt pathogens that colonize water-cond...
01710
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 13/01/2025
Glycosylation on extracellular vesicles and its detection strategy: Paving the way for clinical use. tinyurl.com/58yvsj6z #glycotime
081
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 04/12/2024
I recommend! New paper @kmikolajczyk.bsky.social shows that exosomes containing Galα1→4Gal epitope can effectively neutralize Shiga toxin 1 tinyurl.com/53knbhmt #glycotime
161
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 26/11/2024
GOLPH3 and GOLPH3L maintain Golgi localization of LYSET and a functional mannose 6-phosphate transport pathway tinyurl.com/7p7pf754 #glycotime
052
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 27/11/2024
Excellent review on coagulation factor VIII and its role in hemophilia. Synthesis, posttranslational modifications, secretion, variants, circulation, clearance, role of vWF, acitvation, immunogenicity. Must-read! @bloodjournal.bsky.social tinyurl.com/2abt6w5c
031
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 30/11/2024
Interesting article about the role of N- and O-glycans in dynamic behaviour and function of filaments in Archaea (model species Sulfolobus acidocaldarius) tinyurl.com/myhvvasv #glycotime
231
Reposted by Krzysztof Mikołajczyk
Marcin Czerwinski @czerwinsmarcin.bsky.social · 02/12/2024
Human Gb3/CD77 synthase (α1,4-galactosyltransferase), encoded by A4GALT gene, forms Galα1 → 4Gal structures on glycosphingolipids and glycoproteins. Its products play important role in cancer metastasis and chemoresistance. More in our review tinyurl.com/3ht9t6ed #glycotime
083
Reposted by Krzysztof Mikołajczyk
Sweet Papers 🤖 @sweetpapers.proteaglyco.com · 02/12/2024
Glycoconjugate Vaccines: Platforms and Adjuvants for Directed Immunity #glycotime #glycobiology
academic.oup.com
Glycoconjugate vaccines: platforms and adjuvants for directed immunity
Abstract. Central to immune recognition is the glycocalyx, a glycan-rich coat on all cells that plays a crucial role in interactions that enable pathogen d
011