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Wiep Klaas Smits (ExpBac/CMAT)

@smitslab.bsky.social
1.4K followers 680 following 429 posts

Assoc. prof. at LUMC/@unileiden. Cdiff, DNA replication, AMR, microbiome, anaerobes. Clostpath Steering committee. Education officer ESGCD. Previously: @unigroningen and @mitofficial. sites.google.com/view/expbac-lumc/h…

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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 29/09/2026
Membrane affinity difference between MinD monomer and dimer is not crucial for MinD gradient formation in Bacillus subtilis doi.org/10.7554/eLif...
doi.org
Client Challenge
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Prof Jenny Rohn @jennyrohn.bsky.social · 29/09/2026
"Our findings underscore that infectious disease spillover and emergence are multi-causal, and that no one-size-fits-all strategy can prevent #epidemics and #pandemics." So what can we do, then? See suggestions in this interesting (but sobering) read #IDSky
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Susan Schlimpert @s-lab.bsky.social · 25/08/2026
It is happening, and registration is open for the EMBO Workshop: Bacterial and archaeal cell division: diverse mechanisms and models. 20–23 April 2027 | Barga, Italy. Come and join us @awehenkel.bsky.social, @seamusholden.bsky.social, @s-lab.bsky.social ! Deadline: Jan 6, 2027. #Bacdiv27
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 29/09/2026
Flagellar toxicity: Flagellar synthesis is lytic for Bacillus subtilis in the absence of PBP1 | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Flagellar toxicity: Flagellar synthesis is lytic for Bacillus subtilis in the absence of PBP1 | PNAS
Flagella are large transenvelope nanomachines but how they transit the peptidoglycan in gram-positive bacteria is poorly understood. A recent model...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 28/09/2026
Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA | PNAS www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 28/09/2026
The underappreciated role of rifampin in shaping the epidemiology of RT027-like Clostridioides difficile lineages academic.oup.com/jac/article/...
academic.oup.com
The underappreciated role of rifampin in shaping the epidemiology of RT027-like Clostridioides difficile lineages
Abstract. The global emergence and dissemination of epidemic Clostridioides difficile ribotype 027 (RT027) and related lineages illustrate the role of anti
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 28/09/2026
The impact of TcdB conformational dynamics on vaccination against Clostridioides difficile: dx.plos.org/10.1371/jour...
dx.plos.org
The impact of TcdB conformational dynamics on vaccination against Clostridioides difficile
Author summary Clostridioides difficile is a major cause of severe gastrointestinal infections. Much of the damage caused during infection is driven by the large multidomain toxin, TcdB, making it a w...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 23/09/2026
Type 2 immunity in Clostridioides difficile infection www.sciencedirect.com/science/arti...
sciencedirect.com
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 23/09/2026
The impact of fecal microbiota transplantation on host immunity and epithelial restoration following Clostridioides difficile infection www.sciencedirect.com/science/arti...
sciencedirect.com
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Evgenii Protasov @evgenii-protasov.bsky.social · 18/09/2026
When genus deserves to be a family 🦠🔬 Recent phylogenomic analyses showed that the genus Methanobrevibacter is severely underclassified. We propose reclassifying it into a family, Methanobrevibacteraceae consisting of 11 genera. @microbiologysociety.org #MicroSky #Archaea doi.org/10.1099/ijse...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 17/09/2026
Clostridioides difficile couples responses to host nutritional immunity and a commensal-derived antibiotic to enable growth in the gut | Science Signaling www.science.org/doi/10.1126/...
science.org
Clostridioides difficile couples responses to host nutritional immunity and a commensal-derived antibiotic to enable growth in the gut
A coordinated response to low iron and bacitracin enables Clostridioides difficile to survive in the gut.
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
RogerWagnerMDPhD @rogerwagnermdphd.bsky.social · 15/09/2026
The Tube #MedSky #UKSky
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Mart Krupovic @mkrupovic.bsky.social · 11/09/2026
Why did some #viruses evolve to be #giants while others did not? Our perspective piece on this topic with Eugene Koonin. www.pnas.org/doi/10.1073/...
pnas.org
Why did some viruses evolve to be giants while others did not? | PNAS
Viruses are ubiquitous mobile genetic elements that are obligate symbionts of cellular life forms and replicate exclusively within host cells. The ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 11/09/2026
It's a wrap! #ICDS2026 has come to an end. As usual, flawless execution, great crowd. There will be another ICDS in two years - but not organised by Maja Rupnik anymore. Lots of respect and appreciation for what she has done over the past decades for the #cdiff community.
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 07/09/2026
How is your day going so far? My trip to #ICDS2026 starts with an overbooked flight resulting me to arrive half a day later (if all goes "well") than expected... #mondayblues
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Prof Jenny Rohn @jennyrohn.bsky.social · 04/09/2026
Thrilled our latest paper out @natureportfolio.nature.com Nature Comms, lead author @microberamon.bsky.social, who developed P-FLO, a urine-flowing human micro-bladder model in collab with Oxford & Leicester to understand #UTI biology & treatment failure 1/4 #UTISky www.nature.com/articles/s41...
nature.com
Effect of human urinary microenvironment and fluid flow on antibiotic and phage therapy efficacy against uropathogenic Escherichia coli - Nature Communications
Maset et al. show that bladder conditions strongly influence how urinary tract infections respond to antibiotics and bacteriophages, highlighting the need for more realistic lab models to improve diag...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 04/09/2026
This is a great study by @joeyzacks.bsky.social et al on "asymptomatic" carriage of Cdiff in infants. Must read! Early-life colonization with Clostridioides difficile remodels the developing gut | Science www.science.org/doi/10.1126/...
science.org
Early-life colonization with Clostridioides difficile remodels the developing gut
Clostridioides difficile causes severe disease in adults but commonly colonizes infants asymptomatically. The consequences of early-life colonization on host development remain unknown. In a neonatal ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 03/09/2026
Effects of sexual dimorphism and estrous cycle on murine Clostridioides difficile infection | Infection and Immunity journals.asm.org/doi/10.1128/...
journals.asm.org
Effects of sexual dimorphism and estrous cycle on murine Clostridioides difficile infection | Infection and Immunity
Clostridioides difficile infection (CDI) is responsible for approximately 25% of all antibiotic-associated diarrhea (1, 2). In the United States, over 223,900 CDI cases occur annually, with a mortalit...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 03/09/2026
Multi-strain Clostridioides difficile infection: Increased detection and clinical implications. www.sciencedirect.com/science/arti...
sciencedirect.com
Multi-strain Clostridioides difficile infection: Increased detection and clinical implications
Clostridioides difficile infection (CDI) is an antibiotic-associated diarrheal disease. Mixed infection has been previously reported. However, its cli…
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Prahathees Eswara @eswaralab.bsky.social · 02/09/2026
Thrilled to share this insightful work of Asher King @subtisilly.bsky.social and Pilar Horigian @pilarhorigian.bsky.social! #ProudPI #MicroSky #AMR #SubtiWiki In this work, we reveal the *magic* behind the protective effects of magnesium in Bacillus subtilis. Read Asher's 🧵 below for more details.
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 03/09/2026
Clinical failure of an extended-pulsed fidaxomicin regimen associated with emergence of a Clostridioides difficile isolate with reduced fidaxomicin susceptibility in an elderly man | Antimicrobial Agents and Chemotherapy journals.asm.org/doi/10.1128/...
journals.asm.org
Clinical failure of an extended-pulsed fidaxomicin regimen associated with emergence of a Clostridioides difficile isolate with reduced fidaxomicin susceptibility in an elderly man | Antimicrobial Age...
Fidaxomicin is a macrocyclic antibiotic recommended as the preferred antimicrobial treatment for Clostridioides difficile infection (CDI) when available (1, 2). Fidaxomicin is as effective as oral van...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 01/09/2026
AGA Clinical Practice Update on Management of Clostridioides difficile Infection in Adults: Expert Review www.sciencedirect.com/science/arti...
sciencedirect.com
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 28/08/2026
Very interesting! Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains www.nature.com/articles/s41...
nature.com
Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains - Nature Communications
Using network analysis for inter-hospital spread and algorithmically optimising sentinel site selection, the authors design a surveillance system to rapidly detect emerging nosocomial pathogen strains...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 27/08/2026
Generation and characterization of a novel MHC-II tetramer for tracking and characterization of toxin B–specific CD4+ T cell responses academic.oup.com/jimmunol/art...
academic.oup.com
Validate User
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Cameron Thrash @jcamthrash.bsky.social · 18/08/2026
As a component of aseptic technique, Bunsen burners do not universally decrease deposition of microbe-containing particles journals.asm.org/doi/full/10.... #jcampubs
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 17/08/2026
Elucidating the pleiotropic effects of clpC deletion in Clostridioides difficile: proteomic and phenotypic insights www.sciencedirect.com/science/arti...
sciencedirect.com
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 12/08/2026
A TcdB-Targeting Antivirulence Compound Preserves Gut Homeostasis and Ameliorates Clostridioides difficile Infection pubs.acs.org/jafcau/artic...
pubs.acs.org
A TcdB-Targeting Antivirulence Compound Preserves Gut Homeostasis and Ameliorates Clostridioides difficile Infection
Abstract. Clostridioides difficile (C. difficile) is a leading cause of antibiotic-associated diarrhea and colitis, with hypervirulent or resistant strains
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 12/08/2026
Uncovering an alternate pathway of antibiotic resistance in spore-forming bacteria www.nature.com/articles/s41... #mecA #clostridia
nature.com
Uncovering an alternate pathway of antibiotic resistance in spore-forming bacteria - Nature Communications
Cephamycin antibiotics inhibit sporulation of the pathogenic bacterium Clostridioides difficile by targeting the spore protein SpoVD. Here, the authors show that isolates carrying the resistance gene ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 10/08/2026
A single DNA methylation site regulates cell fate during Clostridioides difficile sporulation: dx.plos.org/10.1371/jour...
dx.plos.org
A single DNA methylation site regulates cell fate during Clostridioides difficile sporulation
Author summary Most bacteria use orphan DNA methyltransferases to modify their genomes and alter their gene expression. While these modifications lead to changes in a bacterium’s phenotype, the specif...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 10/08/2026
Balancing act of cytokines in controlling the severity of Clostridioides difficile infection | Infection and Immunity journals.asm.org/doi/10.1128/...
journals.asm.org
Balancing act of cytokines in controlling the severity of Clostridioides difficile infection | Infection and Immunity
Clostridioides difficile is the most common cause of health care-associated gastrointestinal infections and is responsible for approximately half a million infections and 30,000 deaths in the United S...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 07/08/2026
Strain-level ecological filtering governs microbial colonization of the human gut www.sciencedirect.com/science/arti...
sciencedirect.com
Strain-level ecological filtering governs microbial colonization of the human gut
Microbial colonization of the human gut is typically inferred from species-level profiling, yet durable establishment operates at the strain level. He…
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 05/08/2026
Pyocyanin produced by Pseudomonas aeruginosa creates legacy effects that promote antibiotic resistance evolution in enterococci | Antimicrobial Agents and Chemotherapy journals.asm.org/doi/10.1128/... from @lizscurious.bsky.social 's team
journals.asm.org
Pyocyanin produced by Pseudomonas aeruginosa creates legacy effects that promote antibiotic resistance evolution in enterococci | Antimicrobial Agents and Chemotherapy
Bacterial infections may consist of different species that together form a polymicrobial community, as is the case in urinary tract infections (UTIs) (1–3). The response to antibiotic treatment of suc...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 05/08/2026
A hierarchical regulatory cascade defines the temporal window of natural transformation in Staphylococcus aureus www.biorxiv.org/content/10.6...
biorxiv.org
A hierarchical regulatory cascade defines the temporal window of natural transformation in Staphylococcus aureus
Natural transformation (NT), a major mechanism of horizontal gene transfer, promotes bacterial genome plasticity and contributes to the dissemination of antibiotic resistance. NT requires the developm...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 03/08/2026
🚨publication alert: Collateral effects of antibiotic resistance in Campylobacter jejuni - academic.oup.com/femsle/artic...
academic.oup.com
Collateral effects of antibiotic resistance in Campylobacter jejuni
Collateral effects in antibiotic sensitivity related to antibiotic resistance in Campylobacter jejuni.
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 16/07/2026
Look what arrived in the mail! @springernature.com
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 16/07/2026
Acquisition of a gene cluster in Clostridioides difficile PCR ribotype 023 strains enables xylitol utilization | mSphere journals.asm.org/doi/10.1128/...
journals.asm.org
Acquisition of a gene cluster in Clostridioides difficile PCR ribotype 023 strains enables xylitol utilization | mSphere
Genetic factors aiding in the emergence of the opportunistic pathogen Clostridioides difficile are poorly understood. Infections with clade 3 (PCR ribotype 023) strains causing severe disease have increased since 2008. Here, we show RT023 strains have the unique ability to utilize xylitol, a sugar alcohol used as a food additive in humans and animals, due to the presence of a xylitol dehydrogenase (xdh) gene within a mobile genetic element (MGE). This xylitol utilization ability confers a fitness benefit in competition against other C. difficile ribotypes, as well as in a fecal community in vitro. Research investigating the underlying genetic factors driving the physiology of C. difficile will improve our understanding of colonization and hypervirulence.
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 14/07/2026
Full article: Genomic evolution and re-emergence of a multidrug-resistant Clostridioides difficile RT027 clone with reduced vancomycin susceptibility driving a prolonged hospital outbreak www.tandfonline.com/doi/10.1080/...
tandfonline.com
Genomic evolution and re-emergence of a multidrug-resistant Clostridioides difficile RT027 clone with reduced vancomycin susceptibility driving a prolonged hospital outbreak
Following an extended period of declining prevalence of the epidemic Clostridioides difficile ribotype 027 (RT027) in Portugal, a genetically distinct, multidrug-resistant (MDR) RT027 strain with r...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 14/07/2026
Full article: The emergence and biological characteristics of linezolid-resistant Clostridioides difficile isolates in the Asia-Pacific region www.tandfonline.com/doi/10.1080/...
tandfonline.com
The emergence and biological characteristics of linezolid-resistant Clostridioides difficile isolates in the Asia-Pacific region
Linezolid-resistant Clostridioides difficile, conferred by the acquisition of cfr-like genes, has been reported in Europe and America. However, the emergence of linezolid resistance in C. difficile...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 14/07/2026
Extended-pulsed fidaxomicin versus conventional dosing in patients at high risk of recurrence of Clostridioides difficile infection: a multicentre cohort study. www.sciencedirect.com/science/arti...
sciencedirect.com
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 10/07/2026
Intestinal muscularis in health and disease www.nature.com/articles/s42...
nature.com
Intestinal muscularis in health and disease - Communications Biology
The authors review the intestinal muscularis – an increasingly recognized neuroimmune interface that orchestrates gut homeostasis, contributes to disease pathogenesis, and represents a therapeutic tar...
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 08/07/2026
Plasmid-encoded host reprogramming promotes plasmid dissemination www.biorxiv.org/content/10.64898/20…
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 08/07/2026
[🚨] Publication alert! Years of hard work is now published in @pnas.org - www.pnas.org/doi/full/10.... It's not everyday that a novel biosynthetic intermediate is identified in bacteria, so this warrants a short summary below [👇] 1/7
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Reposted by Wiep Klaas Smits (ExpBac/CMAT)
Xavier Charpentier @labxc.bsky.social · 07/07/2026
#microsky New preprint from the lab! Widespread immune systems protect bacteria against conjugative plasmids www.biorxiv.org/content/10.6... Kudos to the extremely talented lead author Ludovic Poiré! Key contributions by @francoisrousset.bsky.social and also help from C. Lesterlin/TacC lab. 🧵⬇️
biorxiv.org
Widespread immune systems protect bacteria against conjugative plasmids
Conjugative plasmids are a class of mobile genetic elements capable of efficient transfer between bacterial cells. Although they can introduce beneficial traits such as antibiotic resistance to recipi...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 06/07/2026
A plasmid-encoded H-NS protein selectively binds its own plasmid www.biorxiv.org/content/10.6...
biorxiv.org
A plasmid-encoded H-NS protein selectively binds its own plasmid
H-NS is an abundant nucleoid-associated protein found in Enterobacterales species. Some conjugative plasmids encode H-NS homologues, which are thought to facilitate plasmid maintenance and reduce the ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 06/07/2026
Direct visualisation of post-replication gap formation at the bacterial RRS www.biorxiv.org/content/10.6...
biorxiv.org
Direct visualisation of post-replication gap formation at the bacterial RRS
Replication risk sequences (RRS) are recently discovered genomic structural elements that trigger post-replication gap formation during replisome passage. In E. coli , the two RRS elements are nearly ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 06/07/2026
3′ Exonuclease-mediated DNA assembly at room temperature and below www.biorxiv.org/content/10.6...
biorxiv.org
3′ Exonuclease-mediated DNA assembly at room temperature and below
DNA assembly is a cornerstone of synthetic biology, enabling the construction of bespoke genetic systems for applications ranging from metabolic engineering to DNA nanotechnology. Conventional Gibson ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 06/07/2026
Thanks to our Department for highlighting our recent publication on their LinkedIn profile: www.linkedin.com/posts/breakt...
linkedin.com
Nature Communications Paper highlights effect of antibiotics prior to C. difficile colonization | LUCID Research
🌐Breakthrough: Nature Communications Paper highlights effect of antibiotics prior to C. difficile colonization In a paper published in Nature Communications, Annefleur Hensen and colleagues detailed...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 06/07/2026
Carboxypeptidase activity drives L,D-transpeptidase essentiality during vegetative growth and sporulation in Clostridioides difficile www.biorxiv.org/content/10.6...
biorxiv.org
Carboxypeptidase activity drives L,D-transpeptidase essentiality during vegetative growth and sporulation in Clostridioides difficile
In most bacteria, peptidoglycan contains mainly 4-3 crosslinks formed by penicillin-binding proteins (PBPs). But in the opportunistic pathogen Clostridioides difficile , 70% of the crosslinks are 3-3 ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 26/06/2026
Clostridioides difficile as a Zoonotic and Foodborne Pathogen: Reviewing the Global Evidence and South African Data onlinelibrary.wiley.com/share/Z6KJUI...
onlinelibrary.wiley.com
Clostridioides difficile as a Zoonotic and Foodborne Pathogen: Reviewing the Global Evidence and South African Data
Reader environment loaded
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 25/06/2026
[🚨] Publication alert! The CloDiCo trial is now published in @natcomms.nature.com @natureportfolio.nature.com (Editor's choice!). This is the work of an amazing team, led by MD-PhD student Annefleur Hensen. Check out this thread [👇] for a summary of the study. www.nature.com/articles/s41... 1/10
nature.com
Experimental human colonisation with non-toxigenic Clostridioides difficile: a placebo-controlled randomised clinical trial - Nature Communications
Experimental human colonisation with non-toxigenic Clostridioides difficile shows that antibiotic-mediated microbiota disruption, particularly prolonged treatment, increases susceptibility to C. diffi...
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