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Hanh Vu

@hanhtkvu.bsky.social
303 followers 348 following 23 posts

Engineer-turned-biologist Planarian fanatic GL @EMBL

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Reposted by Hanh Vu
Meng Zhu @zhumeng123.bsky.social · 24/09/2026
Two years since the 1st submission, our work on limb heterochrony is finally out! 🎉🎊 @cellcellpress.bsky.social Delayed hindlimb dev vs forelimb is a widely conserved trait in mammals. We show that maternal O2 regulates this phenotype 👉🏻 shorturl.at/MGrwl
shorturl.at
Shifts in embryonic oxygen levels cue heterochrony in limb initiation
Mammalian embryos see a substantial increase in available oxygen once the placenta forms. This increase in oxygen exposure serves as a trigger for initiating the development of the hindlimb, thus cont...
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Michael Hiller @hillermich.bsky.social · 23/09/2026
Happy to share results of the @bat1kgenomes.bsky.social phase 1, providing reference genomes covering 21 bat families. New insights into bat phylogeny, ancestral genome reconstruction, European origin & ancestral echolocation. Great work by a team of 100+ colleagues www.nature.com/articles/s41...
nature.com
Reference genomes and fossils revise bat family phylogeny and biogeography - Nature
An updated phylogeny of bats is presented, based on new genome assemblies and many ancient fossils and including all known bat families.
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Ali Seleit @aliseleit.bsky.social · 22/09/2026
🐟 New preprint ! 🐟 For Hippo pathway aficionados. We generated a CRISPR/Cas9 mediated single-copy endogenous Yap1-mGreenLantern fusion protein in medaka to follow Yap1 dynamics in vivo, through embryogenesis and beyond. And it is such a beautiful line ! 🧵
biorxiv.org
Spatio-temporal visualisation and manipulation of endogenous Yap1 in medaka
A key requirement to address fundamental questions in developmental biology is the ability to visualise and manipulate endogenous signalling proteins in vivo. Here we generate such an enabling experim...
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James Briscoe @jamesbriscoe.bsky.social · 22/09/2026
Our latest paper on building models of cell fate decisions -with David Rand, Marine Fontaine & @joadelas.bsky.social- combines developmental biology, dynamical systems theory and bioinformatics. I wrote a short piece to summarise it & explain ideas behind the approach briscoelab.org/blog-quantif...
briscoelab.org
Quantifying Waddington's Landscape | Briscoe Lab
I have written before about how two conceptual frameworks have shaped our thinking about cell fate, Waddington's epigenetic landscape and Davidson's gene...
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 11/09/2026
Very proud of the team, led by @baukjeje.bsky.social & @fmikus.bsky.social To all of you doing #Expansion #Microscopy #UExM Try Concanavalin A. Its cheap, easy to use & labels the #nuclear #Envelope @moorefound.bsky.social @embl.org @sciencesunige.bsky.social @erc.europa.eu @snsf.ch
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Alessandro De Simone @desimonelab.bsky.social · 17/09/2026
How is proliferation modulated in regeneration for tissues to reach their right size? We found that, in zebrafish scales, proliferation is shut down by a moving front of osteoblast maturation. The front's dynamics scale with tissue size, ensuring proper osteoblast amplification. tinyurl.com/5e45twx3
tinyurl.com
A moving front of osteoblast maturation scales regenerating zebrafish bone
Successful regeneration recovers lost tissues to their original form. Here, we investigate how proliferation of bone-forming osteoblasts is timely regulated to control tissue size during zebrafish sca...
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Margarete Diaz Cuadros @mdiazcuadros.bsky.social · 14/09/2026
First preprint from the lab, led by @gabbov.bsky.social! We identify a metabolic bottleneck that helps set the pace of human development: low levels of the redox enzyme GPD1L limit NADH recycling. Boosting GPD1L mimics mouse cells and accelerates development! www.biorxiv.org/content/10.6...
biorxiv.org
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Carrie Adler @carrieadler.bsky.social · 14/09/2026
Come be my colleague here in Ithaca! We're looking for a colleague doing cool science in the realm of genome editing, structural biology, or pharmacology. Or all of the above. apps.hr.cornell.edu/recruiting/f...
apps.hr.cornell.edu
Academic Career Opportunities
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Vikram Chandra @vchandra.bsky.social · 09/09/2026
I am excited to announce that I will start the Brain Origins Lab at the Crick in March 2027! Using acoels as a model system, the lab will study how animal brains evolve, and how innovations in brain organisation enable new computational abilities and the evolution of complex behaviour.
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Vikram Chandra @vchandra.bsky.social · 09/09/2026
I will be hiring at all levels soon - I’m looking for systems neuroscientists, molecular biologists, genomics experts, physicists, and more. If you’re interested in distributed computation, brain evolution, or the behaviour of marine invertebrates, get in touch! www.crick.ac.uk/research/lab...
crick.ac.uk
Vikram Chandra
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Alberto Perez-Posada @apposada.bsky.social · 09/09/2026
3 weeks left to apply! Are you an Undergrad/MSc student? Interested in bioinformatics, single cell analyses, evolution, and developmental biology? Looking for a potential research project? We are offering one fellowship for such an intership at CRG! Apply at: www.crg.eu/en/content/t... RT/share!
crg.eu
Centre for Genomic Regulation Website
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Anh Hoang Le, PhD 🏳️‍🌈🏴󠁧󠁢󠁳󠁣󠁴󠁿🇻🇳 @anhhle2702.bsky.social · 07/09/2026
Very happy to share my postdoc paper is out now in @natcellbio.nature.com titled "Tissue flow acts as a guidance cue for immune cell polarization and directional migration". If you love imaging and immune cells, this is for you! #microscopymonday www.nature.com/articles/s41... A 🧵: 1/n
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Rink Lab @rink-lab.bsky.social · 06/09/2026
And that’s a wrap! We hope everyone had as enjoyable and productive a time at ISFB XVI as we did. Thanks for attending, and we’ll see you again in Sant Feliu in 2029!
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Thibaut Brunet @thibautbrunet.bsky.social · 02/09/2026
🚨 New preprint alert! 🚨 Choanoflagellates reorganize their global cytoskeletal architecture within seconds to explore confined microspaces. This is the main PhD work of the amazing @maitefreired.bsky.social www.biorxiv.org/content/10.6... A tread 🧵⬇️
biorxiv.org
Rapid repurposing of microvillar content drives a flagellate-to-amoeboid switch in the closest relative of animals
Animal cells extensively remodel their cytoskeleton during differentiation and can notably switch between two major motility modes: flagellum-based swimming and actin-based crawling. We previously sho...
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Casey Dunn @caseywdunn.bsky.social · 25/08/2026
My new book, Phylogenetic Biology, is now published. Available online for free at dunnlab.org/phylogenetic... . Physical copies can be purchased at shop.lightningsource.com/b/085?params... or your favorite bookstore.
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MadScientist @mads100tist.bsky.social · 29/08/2026
Do you work with microscopy images and segment to quantify or track? Do you study cell biology? development? Gather round! Let me tell you about FOCUS-3D, a segmentation algorithm that is fast, accurate and can be used on any model. We used it here to study zebrafish development. 🧪 (thread)
biorxiv.org
FOCUS‑3D: Robust, generalizable volumetric cell segmentation for three‑dimensional fluorescence microscopy
Understanding how cells establish spatial organization within tissues is a fundamental question in life sciences. While modern three-dimensional fluorescence microscopy captures large-volume tissue ar...
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Erik van Nimwegen @erikvannimwegen.bsky.social · 21/08/2026
Remember this? bsky.app/profile/did:... Rigorous visualization of the structure in your high-dimensional data. Fantastic work by @dhdegroot.bsky.social With help of the reviewers of Nat Biotech it is now updated, extended an officially published here: www.nature.com/articles/s41... 1/n
nature.com
Bonsai reconstructs tree representations for distortion-free visualization and exploration of high-dimensional data - Nature Biotechnology
High-dimensional data are visualized through representation on tree structures.
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Teresa Rayon @trayon.bsky.social · 15/08/2026
Our work on the role of the proteasome in developmental tempo is out!!!! 🐭⌛️👤⏳ Six years after identifying an association between protein stability and developmental tempo, we now demonstrate a causal link between protein turnover and developmental tempo through proteasomal degradation
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Irene Miguel-Aliaga @irenemiguel-aliaga.bsky.social · 11/08/2026
Read about our latest work here www.cell.com/cell/fulltex... or let Alessandro tell you all about it (link below)!
cell.com
The sex and reproductive plasticity of intestinal muscles instruct gut size
Adult intestinal size plasticity is driven not only by epithelial stem cells but also by remodeling of the surrounding visceral musculature. Sex- and reproduction-dependent muscle remodeling controls ...
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Harmit Singh Malik @harmitmalik.bsky.social · 06/08/2026
Come be our colleague. I have been in this Division for 27 years (4 as a postdoc and 23 as a PI). It is an amazing place to work, collaborate, and be inspired. If you are applying to be an Assistant or Associate Professor this Fall, don't miss this deadline.
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Kristina Stapornwongkul @kstapornwongkul.bsky.social · 06/08/2026
First published teamwork of the lab 🎉! We wrote a review about emerging concepts of how metabolism promotes, regulates and changes during gastrulation. We hope it will be useful for anyone interested in the emerging field of developmental metabolism. www.sciencedirect.com/science/arti...
sciencedirect.com
A metabolic view of gastrulation: Coordinating signalling, epigenetics and morphogenesis
Gastrulation is the morphogenetic process by which the single-layered pluripotent epiblast is reorganised into the three germ layers and the basic bod…
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 05/08/2026
PLEASE SHARE! New job openings in my lab @zmbp-tuebingen.bsky.social. We have a broad interest into the mechanistic basis of how molecular complexes are rewired during cellular development in plants and during invasion by pathogens. 🌱🍄🔬 See details below 👇 #PlantSciJobs
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Inés Fournon Berodia @inesfournon.bsky.social · 04/08/2026
Very pleased to finally share the main story from my PhD, now published in @natcomms.nature.com ! 🎉 Using a sea anemone we discovered and characterised epithelial cell extrusion as the mechanism underlying starvation-induced cell loss. 🔗 Open-access article: www.nature.com/articles/s41...
nature.com
Epithelial cell extrusion underlies starvation-induced cell loss in a sea anemone - Nature Communications
Epithelial cell extrusion in a sea anemone shares key hallmarks with bilaterians and is dynamically regulated by nutritional status. During starvation-induced body shrinkage, extrusion likely contribu...
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Rita Mateus @ritamateus.bsky.social · 03/08/2026
New preprint alert!!! Super proud to finally share an authentic 'tour-de-force' from the amazing PhD students Shivani Gunnan @shivanigunnan.bsky.social, Max Kotz and Lucas Ribas, in collaboration with @friedrich-group.bsky.social 👇a small thread www.biorxiv.org/content/10.6...
biorxiv.org
Developmental growth rates adapt to enable self-correction of organ morphology after injury.
Proportional organ growth requires tissue-level control of cell behavior. Yet the cues that adapt growth rates, especially after organ injury, remain unclear. Here, we uncover that developing organs a...
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 03/08/2026
Happy to share the final version of our study on the evolution of chromatin states across eukaryotes, out today in @natgenet.nature.com Led by @crisnava.bsky.social and @seanamontgomery.bsky.social www.nature.com/articles/s41... Some highlights below
nature.com
Diversity and evolution of chromatin regulatory states across eukaryotes - Nature Genetics
This study introduces iChIP2, a low-input chromatin immunoprecipitation followed by sequencing method that profiles histone post-translational modifications (hPTMs) simultaneously across diverse eukar...
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André Nadler @nadlerlab.bsky.social · 29/07/2026
Lipids build the membranes of all cells, but identifying their precise functions is extremely challenging. Here’s our attempt to change that: How to find and understand lipid-protein interactions, by Katelyn Cook & company. www.biorxiv.org/content/10.6...
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Yasin Dagdas @plantophagy.bsky.social · 29/07/2026
If I were an Early Career Researcher (#ECR) today, I wouldn’t join a lab that doesn’t #preprint (the PI agreed to keep paying me until my paper is finally published). It now takes ages to get papers through peer review, and without preprints you’re putting your future in someone else’s hands.
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Jan Lohmann @meristemania.bsky.social · 20/07/2026
Awesome Symposium coming up @cosheidelberg.bsky.social in September! Check it out - registration is free. www.cos.uni-heidelberg.de/en/cos-sympo...
cos.uni-heidelberg.de
COS Symposium 2026 - Centre for Organismal Studies
Venue: Lecture hallCentre for Organismal Studies – Heidelberg UniversityIm Neuenheimer Feld 230
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Jana Helsen @helsenjana.bsky.social · 16/07/2026
I am starting my lab at the University of Geneva next January! Incredibly excited to soon be joining the MOCEL department as an Asst. Professor. The lab will use evolutionary cell biology to study chromosomes, centromeres & speciation 🧬🔬🌱 Intrigued, want to join or collaborate? 🔗 helsenlab.org
helsenlab.org
Helsen lab | chromosome and centromere evolution
The Helsen lab at the University of Geneva explores how centromeres and chromosomes evolve, diversify, and function across eukaryotes. Discover our latest publications, research team, and open positio...
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Emília Santos @emiliapsantos.bsky.social · 14/07/2026
🎨 job alert 🐠 Come join us! We have two positions open! These are part of our @erc.europa.eu funded project on the mechanisms underpinning convergence of colour patterns in cichlid fishes! Closing date: 16th August. Postdoc: www.cam.ac.uk/jobs/researc... Technician: www.cam.ac.uk/jobs/researc...
static.klipy.com
Callipterus Cichlid Collecting Shell
ALT: Callipterus Cichlid Collecting Shell
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Yasin Dagdas @plantophagy.bsky.social · 10/07/2026
Took me a while, but we finally have a new lab website: ydagdas-lab.github.io/Lab-Website/ I will do my best to keep this one up to date.
ydagdas-lab.github.io
Dagdas Lab — Evolutionary Cell Biology
How cells clean house across the eukaryotic tree of life. Autophagy & cellular quality control at Heidelberg University.
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Margherita Battistara @mbattistara.bsky.social · 08/07/2026
🪲🪰 Our preprint is out! This was a team effort with @wolframponisch.bsky.social, @matthewabenton.bsky.social and Ewa Paluch. We asked whether Drosophila and Tribolium use the same cell behaviours to fold their embryos during gastrulation. 🧵👇 www.biorxiv.org/content/10.6...
biorxiv.org
Morphospace analysis reveals divergent cellular behaviours driving tissue internalisation during insect gastrulation
During gastrulation, embryonic epithelia undergo large-scale remodelling to internalise the mesoderm. Whether the cellular mechanisms underlying these tissue deformations are conserved across species ...
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EMBL DB unit @embldbunit.bsky.social · 08/07/2026
Huge thanks to Iñaki Ruiz-Trillo for opening our Developmental Biology series 26/27 @embl.org. Iñaki showed us how studying our closest unicellular relatives is reshaping what we know about animal origins and why exploring the unknown is key to any field. We couldn't have asked for a better start! 🦠
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The Milinkovitch-Tzika lab @lanevol.bsky.social · 03/07/2026
How mammals get their fur? New research from the Milinkovitch-Tzika lab, published in PNAS, shows that chemotaxis—cells moving toward chemical cues—drives hair follicle precursor self-organization during embryonic development, generating diverse fur patterns across mammals. doi.org/10.1073/pnas...
doi.org
Chemotactic self-organization captures the dynamics of mammalian hair follicle patterning | PNAS
The spatial patterning of mammalian hair follicle precursors in embryonic skin is most commonly studied in the laboratory mouse (Mus musculus), whe...
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NordenLab @nordenlab.bsky.social · 03/07/2026
#2 Close collaboration with @rocha-lab.bsky.social across institutes. @catfigueiredo.bsky.social shows that neurogenic progenitors in the developing retina can respond to cell death with an unexpected self-renewing division. I am sure Mauricio has more to say :-). www.biorxiv.org/content/10.6...
biorxiv.org
Apoptosis-induced self-renewal of neurogenic progenitors safeguards retinal development against extensive cell loss
Developing embryos have a striking ability to buffer external and internal perturbations. A key example of this phenomenon across developing systems is successful organ formation even after substantia...
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NordenLab @nordenlab.bsky.social · 03/07/2026
We are trying for a hattrick this month and two out of three are out: #1 Great work by Margarida Cruz et al. showing that tissue context in addition to cell intrinsic programs can determine migration mode of neurons. Retinal Bipolar Cells as an example. Check it out! www.biorxiv.org/content/10.6...
biorxiv.org
Tissue lamination state switches neuronal translocation from active to passive in the vertebrate retina
Neuronal migration is essential for establishing functional tissue architecture in the developing central nervous system. While cell-intrinsic mechanisms driving neuronal movement have been identified...
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Syd Sattler @sydsat.bsky.social · 29/06/2026
What if an embryo made immune cells before it finished building the tissue they usually come from? In our new preprint, we show that annual killifish embryos specify neutrophils before germ layers are fully resolved. www.biorxiv.org/content/10.6... Huge thanks to my PI, @ohnolog.bsky.social ! 🧵
biorxiv.org
Early immune cell development precedes gastrulation in annual killifish
During embryogenesis, cell types arise in a predictable order because developmental regulators act sequentially. But how evolutionary changes in morphogenesis reshape the signaling environments that a...
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Hanh Vu @hanhtkvu.bsky.social · 01/07/2026
Super excited that the first preprint from the lab is out! Led by an amazing student, Gaurav @gvaidya.bsky.social, jointly supervised with @mwdorr.bsky.social.
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Gaurav Vaidya @gvaidya.bsky.social · 01/07/2026
The first preprint from my PhD is out! :thread: How does an animal choose between two completely different reproductive fates? Here’s how one planarian does it :point_down: www.biorxiv.org/content/10.6...
biorxiv.org
Life-cycle trajectory inference links temperature-gated progenitors to reproductive fate
Temperature shapes reproductive strategies across animals, yet how individuals switch between sexual and asexual reproduction remains unknown. We establish the planarian Phagocata morgani as a model f...
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Lena Schindler @lena-schindler.bsky.social · 23/06/2026
I am thrilled to share my PhD work with @nicolettapetridou.bsky.social @embl.org: www.biorxiv.org/cgi/content/... A fun collaboration with Bernat Corominas-Murtra, Adrián Aguirre-Tamaral, @bart-smeets.bsky.social , Jef Vanghel and Tom Belpaire! Read the story in the comments below ⤵️
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Nicoletta Petridou @nicolettapetridou.bsky.social · 23/06/2026
Double preprint! 👇 Check out our latest studies on timing, heterogeneity and collective behaviour (with a fun tiny bonus on evolution!) 1. www.biorxiv.org/content/10.6... 2. arxiv.org/abs/2605.13234
biorxiv.org
Cellular timing heterogeneity regulates phase transitions in living matter
Rigidity transitions govern tissue organization in ways reminiscent of inert materials. Yet, living tissues are composed of active units with autonomous timing mechanisms, raising the question whether...
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Sinem Saka @sinemsaka.bsky.social · 21/06/2026
If you’ve built DNA-barcoded antibody panels, you know the pain: every barcode means another conjugation. In our new preprint we introduce UnO, which transforms antibody conjugation problem into a universal barcode conversion workflow, enabling rapid panel generation. www.biorxiv.org/content/10.6...
biorxiv.org
Universal oligo adapters for high-efficiency DNA-barcoded antibody panel generation
DNA-barcoded antibodies are central to a broad range of spatial and dissociative assays and applications, including multiplexed imaging, single-cell profiling, and proximity detection. Direct modifica...
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Xavier Grau-Bové 🌾 @xgrau.bsky.social · 19/06/2026
Do you work with scRNAseq data in non-model organisms that have less-than-stellar gene annotations? ✨ 🧬 You might be interested in GeneExt, a nifty little tool by @zolotarg.bsky.social in @arnausebe.bsky.social's lab, published in #Bioinformatics earlier this year. #singlecell #transcriptomics
academic.oup.com
GeneExt: a gene model extension tool for enhanced single-cell RNA-seq analysis
AbstractMotivation. Incomplete gene models negatively impact single-cell gene expression quantification. This is particularly true in non-model species whe
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Svetlana Dodonova @dodonova-sveta.bsky.social · 19/06/2026
Excited to share our new preprint! 🧬❄️ by brilliant @mdreimann.bsky.social and great collaborators! Using cryo-ET&EM, we reveal archaeal chromatin in a near-native state: variable-beads-on-a-string fibers shaped by growth phase and histone composition #ArchaeaSky www.biorxiv.org/content/10.6...
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Hanh Vu @hanhtkvu.bsky.social · 19/06/2026
Amazing work! Huge congratulations to @bournsupremacy.bsky.social, @mwdorr.bsky.social , and all co-authors 🙌👏🙌
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David Ho @davidho.bsky.social · 18/06/2026
Vaccines are humanity's greatest scientific achievement.
bbc.co.uk
Cervical cancer deaths fall to zero in young women given HPV vaccine
A new study finds that hundreds of lives have been saved since school-age girls were offered the HPV jab in 2008.
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Nicoletta Petridou @nicolettapetridou.bsky.social · 16/06/2026
A very pleasant surprise to see that we got the cover for this paper 🥳 @natphys.nature.com
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Nicoletta Petridou @nicolettapetridou.bsky.social · 02/06/2026
Here the published version of our work on uncoupling different types of tissue phase transitions during development! Find out more on how contact surface tension-driven rigidity transitions trigger tricellular junction formation and initiate epithelial organization! @natphys.nature.com
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Nature Cell Biology @natcellbio.nature.com · 15/06/2026
🏳️‍🌈This June, we celebrate Pride by discussing with @gunawanlab.bsky.social about his personal and academic journey as an LGBTQIA+ immigrant. Happy Pride month! #PrideinSTEM #LGBT 👉https://rdcu.be/forCt www.nature.com/articles/s41...
nature.com
A scientist can come from anywhere - Nature Cell Biology
This June, we celebrate Pride by discussing with Felix Gunawan, assistant professor at the University of Toronto and co-affiliate group leader at the University of Münster, about his personal and acad...
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James Saenz @jamessaenz.bsky.social · 11/06/2026
Thrilled to be joining the ZMBH, where my lab will continue to explore the evolution and engineering of living membranes. Farewell @bcube-tud.bsky.social...I couldn't imagine a better place to have started my lab! I'm perpetually grateful to my lab group for making this such a successful adventure!!
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