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Elena Dvoretskova

@elena-dvoretskova.bsky.social
356 followers 1.2K following 5 posts

postdoctoral researcher at the MPI for biological intelligence I development & evolution of the brain I interactions of transcription factors

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Reposted by Elena Dvoretskova
Alex Donovan @apadonovan.bsky.social · 01/10/2026
I was on a podcast! Chatting about the promise and limitations of brain organoids, and the unexpected origins of one of the most commonly used cerebral organoid protocols! 🧠🧫
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Reposted by Elena Dvoretskova
medRxivpreprint @medrxivpreprint.bsky.social · 26/08/2026
Rare variation illuminates the distinct and pleiotropic genetic architecture of autism across neuropsychiatric traits www.medrxiv.org/content/10.64898/20…
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Reposted by Elena Dvoretskova
Philip Ball @philipcball.bsky.social · 11/09/2026
I am rather delighted by this paper. So here’s a thread to tell you why, and why it matters. /1 www.science.org/doi/10.1126/...
science.org
Noncoding transcription controls the developmental dynamics of long-range gene regulation
The genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely unknown. By using live imaging, we reveal that the ...
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Reposted by Elena Dvoretskova
Claudio Cantù @claudiocantu81.bsky.social · 20/09/2026
I will hire a Postdoc to study the genomic determinants of tumor heterogeneity Please, get in touch if interested, or help me spread the voice @scilifelab.se @kawresearch.bsky.social @liu.se liu.se/en/research/...
liu.se
The Cantù Lab - Genome Regulation in Development and Disease
The Cantù Lab at LiU is focused on one important goal: to discover the mechanisms of genome regulation that drive cell differentiation and specialization during embryonic development.
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Reposted by Elena Dvoretskova
Igor Adameyko @adameykolab.bsky.social · 25/09/2026
Research Briefings about our paper in Nature Genetics (atlas of human facial development): www.nature.com/articles/s41....
nature.com
Human facial development atlas illuminates enhancer-based control of facial individuality - Nature Genetics
The facial skeleton is essential for eating, breathing, kissing, speech and personal identity. Our spatiotemporally resolved cell atlas of human embryonic craniofacial development will facilitate a de...
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Hyejung Won @hyejungwon.bsky.social · 23/09/2026
1/ I’m excited to share our new work, now out in @natneuro.nature.com! This was a wonderful collaboration with my long-term collaborator @steinlab.bsky.social, led by two fantastic trainees, @nanamatoba.bsky.social and Jessica McAfee. www.nature.com/articles/s41...
nature.com
Massively parallel assessment of gene regulatory activity at human cortical-structure-associated variants - Nature Neuroscience
A large-scale functional screen identified noncoding variants that regulate gene activity during human brain development, providing insights into the molecular mechanisms that shape differences in hum...
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Reposted by Elena Dvoretskova
Siobhan Mitchell, PhD @esiobhanmitchell.bsky.social · 21/09/2026
Brilliat new paper : The brain is two separate organs that develop in parallel One organ is for controlling breathing, temperature, heart function, and the other organ is for thinking. They form separately and then join together during development 🧪 www.nature.com/articles/s41...
nature.com
Two parallel neural ectoderm progenitors contribute to the developing brain - Nature Neuroscience
This study shows that the brain arises from two distinct progenitors: one forms the forebrain and midbrain, whereas the other generates the hindbrain. These insights enable the generation of human hin...
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Anthony Ramnauth @philoneurosci.bsky.social · 09/09/2026
New publication from @lukesjulson.bsky.social lab and collaborators! #Neocortical long-range #inhibition promotes #cortical #synchrony and #sleep doi.org/10.1038/s415...
doi.org
Neocortical long-range inhibition promotes cortical synchrony and sleep - Nature
In mice, a sparse population of sleep-active long-range inhibitory neurons in the neocortex promote widespread cortical synchronization and sleep, revealing a cortical mechanism that co...
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Reposted by Elena Dvoretskova
Philippe Batut @philippebatut.bsky.social · 10/09/2026
🧬🔬 Why are enhancers transcribed and how does that impact gene regulation? I’m really excited to share our new paper in @science.org showing that noncoding RNAs control the timing of gene activation in embryos. With Mike Levine #ScienceResearch @columbiamed.bsky.social A few highlights below... 🧵👇
science.org
Noncoding transcription controls the developmental dynamics of long-range gene regulation
The genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely ...
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Reposted by Elena Dvoretskova
Robles Lab @robles-lab.bsky.social · 25/08/2026
Wondering how a ubiquitous expressed clock machinery regulates tissue-specific transcriptional outputs and thus organ physiology? Check our study, please RP!! 👇
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Reposted by Elena Dvoretskova
Wendy Bickmore @wbickmor.bsky.social · 08/09/2026
It was great working with students Kun and Ryan and @hannahlong.bsky.social, combing the literature to try and find examples of bona fide disease-causing variants in non-coding elements - promoters, enhancers and silencers. www.nature.com/articles/s41...
nature.com
Mechanisms underlying disease-causing variants in promoters and enhancers - Nature Genetics
This Review discusses how rare-disease-causing variants in the noncoding genome impact gene regulation, why these examples are so few and how new approaches could accelerate discovery of noncoding var...
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FragileNucleosome @fnucleosome.bsky.social · 03/09/2026
🎤 #FragileNucleosome is back next Wednesday! Hope you enjoyed the summer!Join us next 📅Wednesday to hear about 🧬fascinating research from @mpalamin.bsky.social from Krebs lab and @robertovn.bsky.social from Vos lab. To register if you haven't before: us06web.zoom.us/webinar/regi...
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Drew Schreiner @schreinerdrew.bsky.social · 01/09/2026
Very useful, comprehensive catalogue of striatal cell types in mice and humans!
cell.com
Cross-species single-cell atlas of the striatum defines cell-type and subregion disease vulnerabilities
Single-nucleus RNA sequencing and spatial validation across human and mouse striatum define principles of neuronal specialization across cell types, subregions, and species. These findings lay the fou...
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Shenzhi Chen @shenzhichen1999.bsky.social · 25/08/2026
Excited to share our paper in @natgenet.nature.com on the de novo design of tissue-specific mammalian enhancers that function in vivo in mouse embryos. 🧬🐭 www.nature.com/articles/s41...
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Alex Schier @schierlab.bsky.social · 19/08/2026
What regulates the urge to sleep? William Joo and colleagues identified brain regions that reflect how long mice have been awake. Strikingly, inhibiting one of these regions reduces sleep by 70%, without the major behavioral deficits associated with sleep deprivation. www.nature.com/articles/s41...
nature.com
Wake-activated neuronal populations that regulate sleep drive - Nature
Whole-brain activity mapping, targeted cell manipulations and electrophysiology in mice identify wake-activated neuronal populations that are crucial for sleep drive and can persistently red...
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Oded Rechavi @odedrechavi.bsky.social · 19/08/2026
Lab meetings can be the worst, or the best! :) Here are 22 tips for improving them (including mine) www.nature.com/articles/d41... @nature.com
nature.com
Twenty-two easy ways to power up your lab meetings
Scientists share help and advice on how they got their research discussions flowing.
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Olivier Saulnier @olivier-saulnier.bsky.social · 14/08/2026
Temporal uncoupling of radial glia lineage progression in cortical organoids www.nature.com/articles/s41...
nature.com
Temporal uncoupling of radial glia lineage progression in cortical organoids - Nature
RGP lineage tracing in stem-cell-derived organoids shows highly plastic proliferation and reduced clonal neuronal diversity, indicating that missing non-cell-autonomous niche cues are essential for fa...
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Reposted by Elena Dvoretskova
Teresa Rayon @trayon.bsky.social · 15/08/2026
Our work on the role of the proteasome in developmental tempo is out!!!! 🐭⌛️👤⏳ Six years after identifying an association between protein stability and developmental tempo, we now demonstrate a causal link between protein turnover and developmental tempo through proteasomal degradation
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Chang M. Yun @chang-m-yun.bsky.social · 10/08/2026
So what can you do with ENCODE GRAMMAR? While we’ve shown the ability of one s2f model, ENCODE GRAMMAR brings a new dimension, layering multiple models across cell type & modality. To illustrate, we showcase an example locus: MYC (also our main figure in the ENCODE 4 preprint) 1/
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Ana Pombo @apombo1.bsky.social · 19/06/2026
Join us for the inaugural FASEB Scientific Research Conference on Neuronal Experience-Regulated Transcription, Oct. 5-7, 2026. Abstract Submission Deadline: Monday, August 3, 2026
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Reposted by Elena Dvoretskova
Chang M. Yun @chang-m-yun.bsky.social · 06/08/2026
Finally… Excited to share what I’ve been working on for the first half of my PhD! ENCODE GRAMMAR: One of the largest collections of regulatory DNA seq2func models to date (3,865 in total) trained across ENCODE, with full model interpretations and annotations tracks. Blog: tinyurl.com/3hmknhaa 1/
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Alejandro Montenegro @aemonten.bsky.social · 05/08/2026
"Here we describe a systematic effort (‘Codebook’) to determine the sequence specificity of 332 putative and poorly characterized human TFs." www.nature.com/articles/s41...
nature.com
An expanded codebook of human transcription factor DNA-binding specificity - Nature
Results from a panel of assays that analyse different aspects of DNA sequence specificity reveal more than 100 new motifs to aid the characterization of putative human transcription factors.
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Tara M Finegan @tarafinegan.bsky.social · 03/08/2026
Our International Developmental Mechanics Zoom Seminar Series returns this fall! Interested in sharing your research with an international community? Sign up to speak at an upcoming session: sites.google.com/view/devmech... #DevBio #Mechanobiology #Morphogenesis
Graphic to promote upcoming Developmental Mechanics Zoom Seminar Series
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Jesse Engreitz @jengreitz.bsky.social · 04/08/2026
Update: scE2G is now online at Nature Genetics! Since the preprint, we added a new benchmark on a fully held-out CRISPR dataset. scE2G continues to show state-of-the-art performance, reinforcing that it generalizes well nature.com/articles/s41588-026-02695-8 1/
Held-out CRISPR benchmark: n=189 positives, 4,175 tested pairs from 5 cell types. Weighted AUPRC bar chart with scE2G-Multiome and scE2G-ATAC highest, above Distance to TSS, ABC, and 8 other single-cell methods.
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Bardin Lab @bardinlab.bsky.social · 30/07/2026
A huge congratulations to Zheng and the entire Guo lab for this beautiful story! Very cool mechanism! www.nature.com/articles/s41...
nature.com
Intestinal stem cells count self-renewal divisions to switch multipotency - Nature
In Drosophila, cell fate switching in adult intestinal stem cells is determined through an epigenetic mechanism in which these cells count divisions, switching from producing enterocytes to producing ...
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Reposted by Elena Dvoretskova
Shahar Sukenik @shaharsu.bsky.social · 29/07/2026
Finally out - our work on high throughput design and characterization of disordered protein sequences 🪱🪱🪱. A long time collaboration with BFFs @alexholehouse.bsky.social and @remenecker.bsky.social, with experimental work led by @trevorbrandt.bsky.social and @karaehunt.bsky.social.
nature.com
Rational design of disordered proteins for sequence–function investigation - Nature
GOOSE enables the design and testing of thousands of disordered protein region sequences to reveal distinct sequence-to-function relationships.
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Reposted by Elena Dvoretskova
Maria Antonietta Tosches @matosches.bsky.social · 27/07/2026
Excited to share a new preprint from the lab, by @andrewmatheson.bsky.social and team, where we dive into the superpower of newts: plasticity! www.biorxiv.org/content/10.6... Like many good projects, this started with a serendipitous observation... 🧵1/5
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Benoit Bruneau @benoitbruneau.bsky.social · 23/07/2026
4D Nucleome special issue of Science, featuring our paper "Dose-dependent sensitivity of human three-dimensional chromatin to a heart disease–linked transcription factor", led by Zoe Grant in my lab and Zhuzhen Kuang in Katie Pollard's lab @gladstoneinst.bsky.social www.science.org/toc/science/...
science.org
Contents | Science 393, 6809
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Mohammed Khallaf @khallaf.bsky.social · 15/07/2026
Our new paper is out in @nature.com! We uncovered how a naked mole-rat queen 👑 controls an entire colony: a natural contraceptive scent that suppresses reproduction in other females! A remarkable mammalian parallel to bees and ants! 🐝🐜 @garyrlewin.bsky.social youtu.be/enfv3zJrWKM?...
youtu.be
Naked mole-rats are ruled by a queen: this chemical puts her in power
YouTube video by nature video
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Taro Kitazawa @kitazawa-taro.bsky.social · 18/06/2026
Please RP! Excited to share our new preprint: “Single-cell chromatin tracing reveals multimodal molecular programs during memory formation” We built a single-cell multiomic atlas of aversive learning and used it to trace memory-linked molecular programs. doi.org/10.64898/202...
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Alex Radzisheuskaya @a-radzisheuskaya.bsky.social · 08/07/2026
1/ Very excited to share the first publication from my lab! In this work, we developed an efficient strategy to precisely mutate mammalian histone genes in their native genomic context using CRISPR prime editing: www.nature.com/articles/s41...
nature.com
Identifying critical lysines in mammalian histone H3 with high-throughput CRISPR prime editing - Nature Genetics
This study uses a precise and efficient clustered regularly interspaced short palindromic repeats (CRISPR) prime editing system to substitute lysine residues in histone H3, individually or in combinat...
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Maxim Greenberg @maxvcg.bsky.social · 06/07/2026
I had an (honestly) really fun time writing up an "In Preprints" piece on the two fantastic studies from @grandlab.bsky.social and @schubelerlab.bsky.social. Check it out here. I have also put the original threads from the authors below. journals.biologists.com/dev/article/...
journals.biologists.com
In preprints – housekeeping the housekeeping genes
The term ‘housekeeping gene’ evokes a sense of banality. These are the boring genes that hum in the background, impervious to cell state or stress. For a developmental biologist captivated by the impa...
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Maria Antonietta Tosches @matosches.bsky.social · 29/06/2026
Better late than never... an update on the recent work from the lab. First of all, the Foundation: @astridd93.bsky.social phenomenal paper on the evolution of layering in the cerebral cortex 🧵1/7 www.biorxiv.org/content/10.1...
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Maria Christophorou @mariachristophorou.bsky.social · 06/02/2025
Our new #preprint has: ✅ A KRAB Zinc Finger (the SCAN domain-containing kind) ✅ #transposon sequences (the SINE kind) ✅ #epigenetic regulation (the #enhancer kind) ✅ lineage specification (the neural kind) ❌ and NO heterochromatin! All by PhD student Daniel Moore 🚀 www.biorxiv.org/content/10.1...
biorxiv.org
The KRAB-Zinc Finger protein ZKSCAN3 represses enhancers via embedded retrotransposons
Gene cis -regulatory sequences are increasingly recognised as containing “domesticated” transposable elements that impact their function. The KRAB Zinc Finger Protein (KZFP) family of transcription fa...
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Itai Yanai @itaiyanai.bsky.social · 24/06/2026
🔥 Published today, and just in time for summer conferences, here are your guidelines for presenting badly www.nature.com/articles/s41... rdcu.be/fqa92
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Oded Rechavi @odedrechavi.bsky.social · 24/06/2026
Gloves are off! TODAY WE RELEASE THE 1% A list of the year’s very best papers 👇 (see thread)
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Anders Sejr Hansen @andersshansen.bsky.social · 22/06/2026
(1/n) Very excited to share tri-lab collab (Mirny & Zechner) led by Harvey, Henrik & Jack: Q: How do enhancers & promoters interact in space (contact vs. action-at-a-distance) and time (stable vs. transient)? A: Transient E-P contact (~25-42 nm lasting ~10-20 sec): www.biorxiv.org/content/10.6...
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Michael Goard @michaelgoard.bsky.social · 20/06/2026
Very nicely done Radiolab episode featuring @emilyjacobs.bsky.social and team’s work. Check it out! radiolab.org/podcast/this...
radiolab.org
This is Your Brain on Hormones
We don’t have hormones, hormones have us.
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Simon Fisher @profsimonfisher.bsky.social · 18/06/2026
Researchers recorded from single neurons across frontotemporal cortex in 8 awake individuals during natural speech. They show how activities of collections of cells can capture syntactic & semantic properties of words, & also dynamically incorporate sentence context to encode combinatorial info. 🗣️🧠🧪
nature.com
Mapping the neuronal building blocks of human language with language models - Nature
Wide-scale recordings reveal neurons in the human brain that encode fundamental components of language such as the grammatical relationships between words, their parts of speech and the...
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Merlin Lange @merlinlange.bsky.social · 18/06/2026
🧬 🧪Our RNA velocity benchmark is out in PLOS Comp Biol We tested 5 methods on mouse & zebrafish data. They often disagree (just 1/100 driver genes shared 😬). A hypothesis tool, not ground truth. Open access 👉 doi.org/10.1371/jour... Led by the brilliant Sarah Ancheta (not on bsky)
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Elena Dvoretskova @elena-dvoretskova.bsky.social · 14/06/2026
New preprint from our lab on bioRxiv: “Stoichiometric transcription factor partnerships control GABAergic neuron fate allocation” www.biorxiv.org/content/10.6... A great collaboration with @annrosebright.bsky.social, Connor Lynch, @chr-mayer.bsky.social, and many others.
biorxiv.org
Stoichiometric transcription factor partnerships control GABAergic neuron fate allocation
Combinatorial transcription factor (TF) codes specify neuronal fates, yet how quantitative differences in interacting TFs shape these decisions remains unresolved. We address this in the developing ba...
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Collège de France @college-de-france.fr · 08/06/2026
#Science #Biologie  🦇 « L’évolution des mécanismes du développement » 🖥️ Les vidéos du colloque organisé par le Pr @denisduboule.bsky.social, titulaire de la chaire #Évolution du développement et des #génomes, sont disponibles ! 👉 tinyurl.com/39p4h5pn
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Teif lab @teiflab.bsky.social · 04/06/2026
Sun et al, 2026. NuRD-enabled CTCF-TET crosstalk orchestrates epigenome reprogramming and genome architecture www.cell.com/molecular-ce...
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Simon Fisher @profsimonfisher.bsky.social · 04/06/2026
Bumble bees can apparently play with balls, count, recognize faces, & perceive rhythm. A new study out today in @science.org argues they can also solve novel tasks spontaneously without explicit training, challenging the idea that such cognitive skills are exclusive to large-brained vertebrates.😲🐝🧪👇
science.org
Spontaneous problem-solving in bumble bees
Problem-solving using novel solutions without explicit training is often considered a hallmark of cognitive flexibility. We investigated whether bumble bees (Bombus terrestris) could solve a novel obj...
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Dan Landau @landau.bsky.social · 04/06/2026
Exciting breakthrough technology from the lab, now live in @cellcellpress.bsky.social ! Instead of cutting the genome where proteins bind (e.g., Cut&Tag), D&D-seq scars the DNA with a deaminase, allowing single cell genome mapping of TFs and chromatin remodellers!
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Nicolas Robine 🇪🇺🇫🇷🇺🇸 @nicorobine.bsky.social · 29/05/2026
Single Cell Genomics Day: A (Virtual) Practical Workshop. June 12, 2026, organized by @nygenome.org's Rahul Satija Free, livestreamed, no registration.
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Tjian + Darzacq Lab, UC Berkeley @tjiandarzacq.bsky.social · 02/06/2026
Out now in Science! Our study challenges long-standing assumptions about transcription factor specificity in eukaryotes. Novel single-molecule measurements of TF behavior in living cells reveal an independence of locus-specific binding from DNA sequence recognition.🧵 www.science.org/doi/10.1126/...
science.org
Unstructured transcription factor interactions enable emergent specificity
How intrinsically disordered regions (IDRs) shape chromatin binding and nuclear organization of transcription factors (TFs) remains unclear. We used proximity-assisted photoactivation (PAPA), a single...
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Ana Pombo @apombo1.bsky.social · 10/05/2026
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Nikolai Slavov @slavov-n.bsky.social · 12/05/2026
Single-cell proteomics illuminated new mechanisms of mammalian development. We found that spatially polarized protein distributions and intracellular protein gradients emerge during the earliest stages of mammalian embryogenesis and bias subsequent cell fate decisions. www.cell.com/cell/fulltex...
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Maxim Greenberg @maxvcg.bsky.social · 01/05/2026
This a very important, and extremely well-executed study from Ralph Grand’s group @uniheidelberg.bsky.social. Congrats to all the authors! www.biorxiv.org/content/10.6...
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