Reposted by Elena DvoretskovaAlex Donovan @apadonovan.bsky.social · 01/10/2026I was on a podcast! Chatting about the promise and limitations of brain organoids, and the unexpected origins of one of the most commonly used cerebral organoid protocols! 🧠🧫 051
Reposted by Elena DvoretskovamedRxivpreprint @medrxivpreprint.bsky.social · 26/08/2026Rare variation illuminates the distinct and pleiotropic genetic architecture of autism across neuropsychiatric traits www.medrxiv.org/content/10.64898/20… 012
Reposted by Elena DvoretskovaPhilip Ball @philipcball.bsky.social · 11/09/2026I am rather delighted by this paper. So here’s a thread to tell you why, and why it matters. /1 www.science.org/doi/10.1126/...science.orgNoncoding transcription controls the developmental dynamics of long-range gene regulationThe genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely unknown. By using live imaging, we reveal that the ... 29035
Reposted by Elena DvoretskovaClaudio Cantù @claudiocantu81.bsky.social · 20/09/2026I will hire a Postdoc to study the genomic determinants of tumor heterogeneity Please, get in touch if interested, or help me spread the voice @scilifelab.se @kawresearch.bsky.social @liu.se liu.se/en/research/...liu.seThe Cantù Lab - Genome Regulation in Development and DiseaseThe Cantù Lab at LiU is focused on one important goal: to discover the mechanisms of genome regulation that drive cell differentiation and specialization during embryonic development. 02020
Reposted by Elena DvoretskovaIgor Adameyko @adameykolab.bsky.social · 25/09/2026Research Briefings about our paper in Nature Genetics (atlas of human facial development): www.nature.com/articles/s41....nature.comHuman facial development atlas illuminates enhancer-based control of facial individuality - Nature GeneticsThe facial skeleton is essential for eating, breathing, kissing, speech and personal identity. Our spatiotemporally resolved cell atlas of human embryonic craniofacial development will facilitate a de... 1219
Reposted by Elena DvoretskovaHyejung Won @hyejungwon.bsky.social · 23/09/20261/ I’m excited to share our new work, now out in @natneuro.nature.com! This was a wonderful collaboration with my long-term collaborator @steinlab.bsky.social, led by two fantastic trainees, @nanamatoba.bsky.social and Jessica McAfee. www.nature.com/articles/s41...nature.comMassively parallel assessment of gene regulatory activity at human cortical-structure-associated variants - Nature NeuroscienceA large-scale functional screen identified noncoding variants that regulate gene activity during human brain development, providing insights into the molecular mechanisms that shape differences in hum... 2186
Reposted by Elena DvoretskovaSiobhan Mitchell, PhD @esiobhanmitchell.bsky.social · 21/09/2026Brilliat new paper : The brain is two separate organs that develop in parallel One organ is for controlling breathing, temperature, heart function, and the other organ is for thinking. They form separately and then join together during development 🧪 www.nature.com/articles/s41...nature.comTwo parallel neural ectoderm progenitors contribute to the developing brain - Nature NeuroscienceThis study shows that the brain arises from two distinct progenitors: one forms the forebrain and midbrain, whereas the other generates the hindbrain. These insights enable the generation of human hin... 78126
Reposted by Elena DvoretskovaAnthony Ramnauth @philoneurosci.bsky.social · 09/09/2026New publication from @lukesjulson.bsky.social lab and collaborators! #Neocortical long-range #inhibition promotes #cortical #synchrony and #sleep doi.org/10.1038/s415...doi.orgNeocortical long-range inhibition promotes cortical synchrony and sleep - NatureIn mice, a sparse population of sleep-active long-range inhibitory neurons in the neocortex promote widespread cortical synchronization and sleep, revealing a cortical mechanism that co... 03713
Reposted by Elena DvoretskovaPhilippe Batut @philippebatut.bsky.social · 10/09/2026🧬🔬 Why are enhancers transcribed and how does that impact gene regulation? I’m really excited to share our new paper in @science.org showing that noncoding RNAs control the timing of gene activation in embryos. With Mike Levine #ScienceResearch @columbiamed.bsky.social A few highlights below... 🧵👇science.orgNoncoding transcription controls the developmental dynamics of long-range gene regulationThe genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely ... 5234115
Reposted by Elena DvoretskovaRobles Lab @robles-lab.bsky.social · 25/08/2026Wondering how a ubiquitous expressed clock machinery regulates tissue-specific transcriptional outputs and thus organ physiology? Check our study, please RP!! 👇 063
Reposted by Elena DvoretskovaWendy Bickmore @wbickmor.bsky.social · 08/09/2026It was great working with students Kun and Ryan and @hannahlong.bsky.social, combing the literature to try and find examples of bona fide disease-causing variants in non-coding elements - promoters, enhancers and silencers. www.nature.com/articles/s41...nature.comMechanisms underlying disease-causing variants in promoters and enhancers - Nature GeneticsThis Review discusses how rare-disease-causing variants in the noncoding genome impact gene regulation, why these examples are so few and how new approaches could accelerate discovery of noncoding var... 16424
Reposted by Elena DvoretskovaFragileNucleosome @fnucleosome.bsky.social · 03/09/2026🎤 #FragileNucleosome is back next Wednesday! Hope you enjoyed the summer!Join us next 📅Wednesday to hear about 🧬fascinating research from @mpalamin.bsky.social from Krebs lab and @robertovn.bsky.social from Vos lab. To register if you haven't before: us06web.zoom.us/webinar/regi... 02715
Reposted by Elena DvoretskovaDrew Schreiner @schreinerdrew.bsky.social · 01/09/2026Very useful, comprehensive catalogue of striatal cell types in mice and humans!cell.comCross-species single-cell atlas of the striatum defines cell-type and subregion disease vulnerabilitiesSingle-nucleus RNA sequencing and spatial validation across human and mouse striatum define principles of neuronal specialization across cell types, subregions, and species. These findings lay the fou... 0158
Reposted by Elena DvoretskovaShenzhi Chen @shenzhichen1999.bsky.social · 25/08/2026Excited to share our paper in @natgenet.nature.com on the de novo design of tissue-specific mammalian enhancers that function in vivo in mouse embryos. 🧬🐭 www.nature.com/articles/s41... 35826
Reposted by Elena DvoretskovaAlex Schier @schierlab.bsky.social · 19/08/2026What regulates the urge to sleep? William Joo and colleagues identified brain regions that reflect how long mice have been awake. Strikingly, inhibiting one of these regions reduces sleep by 70%, without the major behavioral deficits associated with sleep deprivation. www.nature.com/articles/s41...nature.comWake-activated neuronal populations that regulate sleep drive - NatureWhole-brain activity mapping, targeted cell manipulations and electrophysiology in mice identify wake-activated neuronal populations that are crucial for sleep drive and can persistently red... 48632
Reposted by Elena DvoretskovaOded Rechavi @odedrechavi.bsky.social · 19/08/2026Lab meetings can be the worst, or the best! :) Here are 22 tips for improving them (including mine) www.nature.com/articles/d41... @nature.comnature.comTwenty-two easy ways to power up your lab meetingsScientists share help and advice on how they got their research discussions flowing. 06624
Reposted by Elena DvoretskovaOlivier Saulnier @olivier-saulnier.bsky.social · 14/08/2026Temporal uncoupling of radial glia lineage progression in cortical organoids www.nature.com/articles/s41...nature.comTemporal uncoupling of radial glia lineage progression in cortical organoids - NatureRGP lineage tracing in stem-cell-derived organoids shows highly plastic proliferation and reduced clonal neuronal diversity, indicating that missing non-cell-autonomous niche cues are essential for fa... 074
Reposted by Elena DvoretskovaTeresa Rayon @trayon.bsky.social · 15/08/2026Our work on the role of the proteasome in developmental tempo is out!!!! 🐭⌛️👤⏳ Six years after identifying an association between protein stability and developmental tempo, we now demonstrate a causal link between protein turnover and developmental tempo through proteasomal degradation 712947
Reposted by Elena DvoretskovaChang M. Yun @chang-m-yun.bsky.social · 10/08/2026So what can you do with ENCODE GRAMMAR? While we’ve shown the ability of one s2f model, ENCODE GRAMMAR brings a new dimension, layering multiple models across cell type & modality. To illustrate, we showcase an example locus: MYC (also our main figure in the ENCODE 4 preprint) 1/ 152
Reposted by Elena DvoretskovaAna Pombo @apombo1.bsky.social · 19/06/2026Join us for the inaugural FASEB Scientific Research Conference on Neuronal Experience-Regulated Transcription, Oct. 5-7, 2026. Abstract Submission Deadline: Monday, August 3, 2026 041
Reposted by Elena DvoretskovaChang M. Yun @chang-m-yun.bsky.social · 06/08/2026Finally… Excited to share what I’ve been working on for the first half of my PhD! ENCODE GRAMMAR: One of the largest collections of regulatory DNA seq2func models to date (3,865 in total) trained across ENCODE, with full model interpretations and annotations tracks. Blog: tinyurl.com/3hmknhaa 1/ 13713
Reposted by Elena DvoretskovaAlejandro Montenegro @aemonten.bsky.social · 05/08/2026"Here we describe a systematic effort (‘Codebook’) to determine the sequence specificity of 332 putative and poorly characterized human TFs." www.nature.com/articles/s41...nature.comAn expanded codebook of human transcription factor DNA-binding specificity - NatureResults from a panel of assays that analyse different aspects of DNA sequence specificity reveal more than 100 new motifs to aid the characterization of putative human transcription factors. 14312
Reposted by Elena DvoretskovaTara M Finegan @tarafinegan.bsky.social · 03/08/2026Our International Developmental Mechanics Zoom Seminar Series returns this fall! Interested in sharing your research with an international community? Sign up to speak at an upcoming session: sites.google.com/view/devmech... #DevBio #Mechanobiology #Morphogenesis 1208
Reposted by Elena DvoretskovaJesse Engreitz @jengreitz.bsky.social · 04/08/2026Update: scE2G is now online at Nature Genetics! Since the preprint, we added a new benchmark on a fully held-out CRISPR dataset. scE2G continues to show state-of-the-art performance, reinforcing that it generalizes well nature.com/articles/s41588-026-02695-8 1/ 13514
Reposted by Elena DvoretskovaBardin Lab @bardinlab.bsky.social · 30/07/2026A huge congratulations to Zheng and the entire Guo lab for this beautiful story! Very cool mechanism! www.nature.com/articles/s41...nature.comIntestinal stem cells count self-renewal divisions to switch multipotency - NatureIn Drosophila, cell fate switching in adult intestinal stem cells is determined through an epigenetic mechanism in which these cells count divisions, switching from producing enterocytes to producing ... 03818
Reposted by Elena DvoretskovaShahar Sukenik @shaharsu.bsky.social · 29/07/2026Finally out - our work on high throughput design and characterization of disordered protein sequences 🪱🪱🪱. A long time collaboration with BFFs @alexholehouse.bsky.social and @remenecker.bsky.social, with experimental work led by @trevorbrandt.bsky.social and @karaehunt.bsky.social.nature.comRational design of disordered proteins for sequence–function investigation - NatureGOOSE enables the design and testing of thousands of disordered protein region sequences to reveal distinct sequence-to-function relationships. 2178
Reposted by Elena DvoretskovaMaria Antonietta Tosches @matosches.bsky.social · 27/07/2026Excited to share a new preprint from the lab, by @andrewmatheson.bsky.social and team, where we dive into the superpower of newts: plasticity! www.biorxiv.org/content/10.6... Like many good projects, this started with a serendipitous observation... 🧵1/5 68246
Reposted by Elena DvoretskovaBenoit Bruneau @benoitbruneau.bsky.social · 23/07/20264D Nucleome special issue of Science, featuring our paper "Dose-dependent sensitivity of human three-dimensional chromatin to a heart disease–linked transcription factor", led by Zoe Grant in my lab and Zhuzhen Kuang in Katie Pollard's lab @gladstoneinst.bsky.social www.science.org/toc/science/...science.orgContents | Science 393, 6809 97523
Reposted by Elena DvoretskovaMohammed Khallaf @khallaf.bsky.social · 15/07/2026Our new paper is out in @nature.com! We uncovered how a naked mole-rat queen 👑 controls an entire colony: a natural contraceptive scent that suppresses reproduction in other females! A remarkable mammalian parallel to bees and ants! 🐝🐜 @garyrlewin.bsky.social youtu.be/enfv3zJrWKM?...youtu.beNaked mole-rats are ruled by a queen: this chemical puts her in powerYouTube video by nature video 14230100
Reposted by Elena DvoretskovaTaro Kitazawa @kitazawa-taro.bsky.social · 18/06/2026Please RP! Excited to share our new preprint: “Single-cell chromatin tracing reveals multimodal molecular programs during memory formation” We built a single-cell multiomic atlas of aversive learning and used it to trace memory-linked molecular programs. doi.org/10.64898/202... 12818
Reposted by Elena DvoretskovaAlex Radzisheuskaya @a-radzisheuskaya.bsky.social · 08/07/20261/ Very excited to share the first publication from my lab! In this work, we developed an efficient strategy to precisely mutate mammalian histone genes in their native genomic context using CRISPR prime editing: www.nature.com/articles/s41...nature.comIdentifying critical lysines in mammalian histone H3 with high-throughput CRISPR prime editing - Nature GeneticsThis study uses a precise and efficient clustered regularly interspaced short palindromic repeats (CRISPR) prime editing system to substitute lysine residues in histone H3, individually or in combinat... 1112044
Reposted by Elena DvoretskovaMaxim Greenberg @maxvcg.bsky.social · 06/07/2026I had an (honestly) really fun time writing up an "In Preprints" piece on the two fantastic studies from @grandlab.bsky.social and @schubelerlab.bsky.social. Check it out here. I have also put the original threads from the authors below. journals.biologists.com/dev/article/...journals.biologists.comIn preprints – housekeeping the housekeeping genesThe term ‘housekeeping gene’ evokes a sense of banality. These are the boring genes that hum in the background, impervious to cell state or stress. For a developmental biologist captivated by the impa... 23613
Reposted by Elena DvoretskovaMaria Antonietta Tosches @matosches.bsky.social · 29/06/2026Better late than never... an update on the recent work from the lab. First of all, the Foundation: @astridd93.bsky.social phenomenal paper on the evolution of layering in the cerebral cortex 🧵1/7 www.biorxiv.org/content/10.1... 13215
Reposted by Elena DvoretskovaMaria Christophorou @mariachristophorou.bsky.social · 06/02/2025Our new #preprint has: ✅ A KRAB Zinc Finger (the SCAN domain-containing kind) ✅ #transposon sequences (the SINE kind) ✅ #epigenetic regulation (the #enhancer kind) ✅ lineage specification (the neural kind) ❌ and NO heterochromatin! All by PhD student Daniel Moore 🚀 www.biorxiv.org/content/10.1...biorxiv.orgThe KRAB-Zinc Finger protein ZKSCAN3 represses enhancers via embedded retrotransposonsGene cis -regulatory sequences are increasingly recognised as containing “domesticated” transposable elements that impact their function. The KRAB Zinc Finger Protein (KZFP) family of transcription fa... 44321
Reposted by Elena DvoretskovaItai Yanai @itaiyanai.bsky.social · 24/06/2026🔥 Published today, and just in time for summer conferences, here are your guidelines for presenting badly www.nature.com/articles/s41... rdcu.be/fqa92 13533199
Reposted by Elena DvoretskovaOded Rechavi @odedrechavi.bsky.social · 24/06/2026Gloves are off! TODAY WE RELEASE THE 1% A list of the year’s very best papers 👇 (see thread) 144314
Reposted by Elena DvoretskovaAnders Sejr Hansen @andersshansen.bsky.social · 22/06/2026(1/n) Very excited to share tri-lab collab (Mirny & Zechner) led by Harvey, Henrik & Jack: Q: How do enhancers & promoters interact in space (contact vs. action-at-a-distance) and time (stable vs. transient)? A: Transient E-P contact (~25-42 nm lasting ~10-20 sec): www.biorxiv.org/content/10.6... 215277
Reposted by Elena DvoretskovaMichael Goard @michaelgoard.bsky.social · 20/06/2026Very nicely done Radiolab episode featuring @emilyjacobs.bsky.social and team’s work. Check it out! radiolab.org/podcast/this...radiolab.orgThis is Your Brain on HormonesWe don’t have hormones, hormones have us. 1198
Reposted by Elena DvoretskovaSimon Fisher @profsimonfisher.bsky.social · 18/06/2026Researchers recorded from single neurons across frontotemporal cortex in 8 awake individuals during natural speech. They show how activities of collections of cells can capture syntactic & semantic properties of words, & also dynamically incorporate sentence context to encode combinatorial info. 🗣️🧠🧪nature.comMapping the neuronal building blocks of human language with language models - NatureWide-scale recordings reveal neurons in the human brain that encode fundamental components of language such as the grammatical relationships between words, their parts of speech and the... 04216
Reposted by Elena DvoretskovaMerlin Lange @merlinlange.bsky.social · 18/06/2026🧬 🧪Our RNA velocity benchmark is out in PLOS Comp Biol We tested 5 methods on mouse & zebrafish data. They often disagree (just 1/100 driver genes shared 😬). A hypothesis tool, not ground truth. Open access 👉 doi.org/10.1371/jour... Led by the brilliant Sarah Ancheta (not on bsky) 2288
Elena Dvoretskova @elena-dvoretskova.bsky.social · 14/06/2026New preprint from our lab on bioRxiv: “Stoichiometric transcription factor partnerships control GABAergic neuron fate allocation” www.biorxiv.org/content/10.6... A great collaboration with @annrosebright.bsky.social, Connor Lynch, @chr-mayer.bsky.social, and many others.biorxiv.orgStoichiometric transcription factor partnerships control GABAergic neuron fate allocationCombinatorial transcription factor (TF) codes specify neuronal fates, yet how quantitative differences in interacting TFs shape these decisions remains unresolved. We address this in the developing ba... 073
Reposted by Elena DvoretskovaCollège de France @college-de-france.fr · 08/06/2026#Science #Biologie 🦇 « L’évolution des mécanismes du développement » 🖥️ Les vidéos du colloque organisé par le Pr @denisduboule.bsky.social, titulaire de la chaire #Évolution du développement et des #génomes, sont disponibles ! 👉 tinyurl.com/39p4h5pn 074
Reposted by Elena DvoretskovaTeif lab @teiflab.bsky.social · 04/06/2026Sun et al, 2026. NuRD-enabled CTCF-TET crosstalk orchestrates epigenome reprogramming and genome architecture www.cell.com/molecular-ce... 084
Reposted by Elena DvoretskovaSimon Fisher @profsimonfisher.bsky.social · 04/06/2026Bumble bees can apparently play with balls, count, recognize faces, & perceive rhythm. A new study out today in @science.org argues they can also solve novel tasks spontaneously without explicit training, challenging the idea that such cognitive skills are exclusive to large-brained vertebrates.😲🐝🧪👇science.orgSpontaneous problem-solving in bumble beesProblem-solving using novel solutions without explicit training is often considered a hallmark of cognitive flexibility. We investigated whether bumble bees (Bombus terrestris) could solve a novel obj... 820682
Reposted by Elena DvoretskovaDan Landau @landau.bsky.social · 04/06/2026Exciting breakthrough technology from the lab, now live in @cellcellpress.bsky.social ! Instead of cutting the genome where proteins bind (e.g., Cut&Tag), D&D-seq scars the DNA with a deaminase, allowing single cell genome mapping of TFs and chromatin remodellers! 212851
Reposted by Elena DvoretskovaNicolas Robine 🇪🇺🇫🇷🇺🇸 @nicorobine.bsky.social · 29/05/2026Single Cell Genomics Day: A (Virtual) Practical Workshop. June 12, 2026, organized by @nygenome.org's Rahul Satija Free, livestreamed, no registration. 02121
Reposted by Elena DvoretskovaTjian + Darzacq Lab, UC Berkeley @tjiandarzacq.bsky.social · 02/06/2026Out now in Science! Our study challenges long-standing assumptions about transcription factor specificity in eukaryotes. Novel single-molecule measurements of TF behavior in living cells reveal an independence of locus-specific binding from DNA sequence recognition.🧵 www.science.org/doi/10.1126/...science.orgUnstructured transcription factor interactions enable emergent specificityHow intrinsically disordered regions (IDRs) shape chromatin binding and nuclear organization of transcription factors (TFs) remains unclear. We used proximity-assisted photoactivation (PAPA), a single... 17835
Reposted by Elena DvoretskovaNikolai Slavov @slavov-n.bsky.social · 12/05/2026Single-cell proteomics illuminated new mechanisms of mammalian development. We found that spatially polarized protein distributions and intracellular protein gradients emerge during the earliest stages of mammalian embryogenesis and bias subsequent cell fate decisions. www.cell.com/cell/fulltex... 1227
Reposted by Elena DvoretskovaMaxim Greenberg @maxvcg.bsky.social · 01/05/2026This a very important, and extremely well-executed study from Ralph Grand’s group @uniheidelberg.bsky.social. Congrats to all the authors! www.biorxiv.org/content/10.6... 614643