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Vladimir Volkov 🇺🇦

@vladimirvolkov.bsky.social
927 followers 292 following 116 posts

Reader in Biochemistry @QMUL. Interested in #biophysics #cryoET #multivalency. I post preprints. he/him volkovlab.com

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Reposted by Vladimir Volkov 🇺🇦
Mill_lab @cilialab.bsky.social · 20h
lnkd.in/p/eTV6xSxk pretty poor placeholder #NikonSmallWorldInMotion on a Saturday evening over two weeks since this all kicked off… #ReleaseTheRawData #MicroscopyMatters #CiliaGate
lnkd.in
Nikon is aware of the inquiries concerning this year’s Nikon Small World in Motion competition, and is reviewing the available information concerning this matter at this time. | Nikon Small World
Nikon is aware of the inquiries concerning this year’s Nikon Small World in Motion competition, and is reviewing the available information concerning this matter at this time.
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Reposted by Vladimir Volkov 🇺🇦
Basil Greber @bjgreber.bsky.social · 01/10/2026
... check out the latest pre-print by @claudioalfieri.bsky.social & his team! www.biorxiv.org/content/10.6...
biorxiv.org
Cryo-tides: synthetic peptides for cryo-EM grid preparation of multi-subunit protein complexes sensitive to the air-water interface
Cryogenic electron microscopy (cryo-EM) has enabled rapid progress in structural biology throughout the last decade. However, cryo-EM sample preparation still represents a major bottleneck in high-res...
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Reposted by Vladimir Volkov 🇺🇦
Basil Greber @bjgreber.bsky.social · 01/10/2026
Those who had a careful look at the methods section of our work on the #cryoEM structure of the CDK11-cyclin L-SAP30BP complex will have noticed that we added a short peptide to our sample before freezing. If you wonder why...
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Reposted by Vladimir Volkov 🇺🇦
Mill_lab @cilialab.bsky.social · 01/10/2026
While #NikonSmallWorldInMotion has been quiet over #CiliaGate, the story has broken mainstream media here in the UK just in time for #PCDAwarenessMonth www.bbc.co.uk/news/article...
bbc.co.uk
Tiny image sparks big backlash in Nikon photo contest
Dr Ning Xu denies he broke the rules of Nikon's annual Small World In Motion contest.
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Reposted by Vladimir Volkov 🇺🇦
Nature Cell Biology @natcellbio.nature.com · 28/09/2026
☕Meiring, Mahapatra et al. show that expanded microtubule lattice conformations, such as those induced by small-molecule taxanes, can lead to the release of GEF-H1 and thus induce RhoA activation. www.nature.com/articles/s41...
nature.com
Taxane-induced conformational changes in the microtubule lattice activate GEF-H1-dependent RhoA signalling - Nature Cell Biology
Meiring, Mahapatra et al. show that expanded microtubule lattice conformations, such as those induced by small-molecule taxanes, can lead to the release of GEF-H1 and thus induce RhoA activation.
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Reposted by Vladimir Volkov 🇺🇦
John Stott @jpsastro.bsky.social · 24/09/2026
Had a UKRI funded grant proposal rejected at the "AI triage stage". "This AI-based triage was used only to identify approximately 50% of the strongest proposals to take forward to full human review." 🧪 #academicsky
I am writing to let you know that, unfortunately, your application was not successful.

Review process

As part of the initial triage of the 179 proposals submitted to this call, each was assessed using an AI-based review. Every proposal was read independently by several different AI models against the same seven criteria used to shape this call (including cyber security relevance, research quality and novelty, importance of the problem addressed, feasibility of the project plan, likely outputs and impact, value for money, and responsible research practice), with each model asked to give a score and a written justification with supporting quotations from the text. To guard against any one model's idiosyncrasies, we also ran a second, independent process in which different AI models debated the merits and weaknesses of each proposal before reaching a judgement, again against the same criteria. Scores from both processes were combined to produce an overall ranking. 

This AI-based triage was used only to identify approximately 50% of the strongest proposals to take forward to full human review.  Projects selected for funding were drawn from those that progressed to the full human review stage. We recognise that AI-assisted assessment is a new and evolving part of the review process, and we are continuing to evaluate how well it aligns with the judgements of human reviewers on this call. We will soon produce a document detailing our method, so that others can build upon it and improve it.

Feedback on your application

Your application was not selected to progress beyond the AI triage stage.  To provide transparency on the outcome of this assessment, we are sharing below the scores (out of 5) from each of the two AI review processes described above, together with the mean score across the two processes.
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Reposted by Vladimir Volkov 🇺🇦
Maksim Kalutskii @maksimkalutskii.bsky.social · 23/09/2026
Excited to share our new preprint! 📜 Here, we used CALVADOS and ultra-CG models to show how the kinetochore establishes a robust attachment to the dynamic microtubule end. Spoiler: IDRs 🧵 1/n www.biorxiv.org/content/10.6...
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Reposted by Vladimir Volkov 🇺🇦
Giorgio Gilestro @giorgio.gilest.ro · 20/09/2026
Academia has seen inflation in the past 30 years but it is now entering Republic of Weimar territory, with value of knowledge moving from "paper to land". In all this, Open hardware is an act of armed resistance to Technofeudalism. giorgio.gilest.ro/the-weimar-o...
giorgio.gilest.ro
The Weimar of knowledge – la bottega
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Alex Holcombe @alexh.bsky.social · 21/09/2026
Consequences of the flood of AI manuscripts: "An early-career researcher at an unbranded institution loses the one mechanism that ever let them be read on merit — anonymous review of the work itself, however badly it functioned in practice.
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Reposted by Vladimir Volkov 🇺🇦
Alex Radzisheuskaya @a-radzisheuskaya.bsky.social · 11/09/2026
We’re hiring! 🧬 We're looking for a Postdoctoral Training Fellow to join our group at the ICR in London and work on chromatin biology, transcription regulation and AML. Curious about how histone modifications shape gene regulation and cell identity? Come join us! jobs.icr.ac.uk/vacancies/15...
jobs.icr.ac.uk
Postdoctoral Training Fellow - Chromatin Biology and Epigenetics in Chelsea | The Institute of Cancer Research
View details and apply for this Postdoctoral Training Fellow - Chromatin Biology and Epigenetics vacancy in Chelsea . Salary: Salary range £45,600 - £51,450 per annum. Dependent on re...
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Reposted by Vladimir Volkov 🇺🇦
Sami Chaaban @sami-c.bsky.social · 10/09/2026
Excited to share that the Chaaban Lab will be opening in January at the Crick!
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Reposted by Vladimir Volkov 🇺🇦
Pim Huis in 't Veld @huis.bsky.social · 09/09/2026
Fresh preprint from the lab: CIP2A tetramerization is required for mitotic DNA repair. A fantastic collaboration with @marcelvanvugt.bsky.social. By @laurendehaan.bsky.social, @rebeccaschneeweiss.bsky.social, and colleagues from Groningen, Vienna, Leiden, and Amsterdam 🙌 doi.org/10.64898/202...
Electron micrograph of full-length human CIP2A and a corresponding Alphafold model
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Vladimir Volkov 🇺🇦 @vladimirvolkov.bsky.social · 26/08/2026
I raise you the stochastically switching Chat GTP/GDP: adding words to a sentence in the GTP form, and then suddenly shortening the sentence when it is in the GDP form
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Reposted by Vladimir Volkov 🇺🇦
Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵
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Reposted by Vladimir Volkov 🇺🇦
marcelvanvugt.bsky.social @marcelvanvugt.bsky.social · 24/08/2026
Very pleased to share this new study: In a truly collaborative effort with the lab of Pim Huis in 't Veld @huis.bsky.social, we combined biochemistry with cell biological and genomic approaches to uncover how CIP2A works in mitotic DNA repair. www.biorxiv.org/content/10.6...
biorxiv.org
CIP2A tetramerization is required for mitotic DNA repair
DNA lesions that persist in mitosis threaten genome stability. These lesions recruit TOPBP1-CIP2A, a complex crucial to tether and process damaged DNA on mitotic chromosomes. Importantly, CIP2A is syn...
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Reposted by Vladimir Volkov 🇺🇦
Florian Huber @me-datapoint.bsky.social · 24/08/2026
This comes as no big surprise since it always felt more like a question of *when*, not *if*. I still find it chilling to see this moment where #AI is allowed to decide to kill. www.nytimes.com/2026/08/24/w...
nytimes.com
A Drone Killed Three Ukrainians. It Was Guided Entirely by A.I.
An attack by what Ukrainian officials said was a Russian drone with an Nvidia chip presages a dystopian future of weaponry untethered to humans.
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Vladimir Volkov 🇺🇦 @vladimirvolkov.bsky.social · 15/08/2026
Doctor, is it a professional deformation to see mitotic spindles everywhere?
Coffee cup with the foam forming a pattern that resembles a mitotic spindle
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Reposted by Vladimir Volkov 🇺🇦
Cahir O'Kane @cahirokane.bsky.social · 12/08/2026
Laser scan versus spinning disc
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Damian Dudka @damiandudka.bsky.social · 17/07/2026
My lab just opened at Lehigh University - we study the origins, mechanisms, and impacts of the rapid evolution of the chromosome segregation machinery. I'm looking for 2 team members (postdoc and lab tech) who are passionate about evolution and cell division! See the opportunities at dudkalab.me.
dudkalab.me
Dudka Lab — Home
The Dudka Lab at Lehigh University studies how rapid evolution of chromosome segregation machinery impacts health, fertility, and disease.
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Reposted by Vladimir Volkov 🇺🇦
Aaron Straight @astraight.bsky.social · 03/08/2026
These two reviews on centromeres and kinetochores in @natrevmcb.nature.com cap off @andrea-musacchio.bsky.social sabbatical at @stanfordbiochem.bsky.social from @valleefoundation.bsky.social. Long time in the making! Non-paywall versions rdcu.be/fxD9V, rdcu.be/fxEar
rdcu.be
Structure and function of the centromere and inner kinetochore
Nature Reviews Molecular Cell Biology - The kinetochore is a macromolecular complex that assembles on centromeric chromatin and connects spindle microtubules to the chromosome. This Review...
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Reposted by Vladimir Volkov 🇺🇦
Thibaut Brunet @thibautbrunet.bsky.social · 25/07/2026
No, these images are not AI-generated, not even photoshopped. They do look artificial because there is something artificial about them: the extra 150 ppm of CO2 resulting from human activity, which has irretrievably transformed the world.
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Reposted by Vladimir Volkov 🇺🇦
Randall Munroe @xkcd.com · 24/07/2026
Calibration Nobel xkcd.com/3275/
Comic. [Person 1 with short hair on stage behind podium reading off paper while addressing audience. People are shown sitting in chairs while Person 2 with ponytail and Person 3 waving are walking toward stage.] PERSON 1: This year’s Nobel Prize in “calibrating your equipment carefully and not embarrassing yourself by publishing spurious results” goes to Dr. Adams and Dr. Smith, who did *not* announce the discovery of microbes on Titan. PERSON 3: Thank you, thank you.
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Robin Bisson @robinbisson.bsky.social · 22/07/2026
Almost exactly 6 months ago, RPN was leaked a document presented to STFC staff that said the council had to reduce spending by £162m by 2029-30 That kicked off months of debate on how cuts would be made But only now has it become clear the total cost savings needed over 4 years is in fact £684m 🧵
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Reposted by Vladimir Volkov 🇺🇦
Carl T. Bergstrom @carlbergstrom.com · 21/07/2026
1. We—@eduede.bsky.social, @mjcrockett.bsky.social, Kevin Gross, and I—have a new preprint on the arXiv today, based on ideas that emerged during an @sfiscience.bsky.social workshop in November 2024: The unintended consequences of large language models as a labor-augmenting technology in science.
arxiv.org
The unintended consequences of large language models as a labor-augmenting technology in science
As a labor-augmenting technology, large language models (LLMs) have the potential to accelerate scientific activity across the research pipeline. But even if LLMs perform on par with human experts at ...
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Reposted by Vladimir Volkov 🇺🇦
Wes Cowley @wes.wordsbywes.ink · 17/07/2026
While this article in Science is getting dragged for leaving ChatGPT trackers in links, there's a subtler issue. The author states "[T]he ability of large language models (LLMs) to predict protein structures and to accelerate the discovery of new materials has revolutionized both fields." (1/7)
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Ben Saunders @bensaunders.bsky.social · 16/07/2026
Basically an ad for a Google product, written by Google employees, presented as a scientific paper in Nature. www.nature.com/articles/s41...
nature.com
Accelerating scientific discovery with Co-Scientist - Nature
Co-Scientist is an AI system for structured scientific thinking and generates research hypotheses for experimental verification.
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Reposted by Vladimir Volkov 🇺🇦
Guðjón Ólafsson @godjohn.bsky.social · 15/07/2026
A fully funded PhD position is now open in my lab at the University of Iceland. We are looking for an ambitious researcher to join us in Reykjavik, Iceland to work on targeted protein degradation. Interested? You are welcome to contact me or check out: 🔗https://euraxess.ec.europa.eu/jobs/452601
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Reposted by Vladimir Volkov 🇺🇦
Tim @timisstuck.bsky.social · 13/07/2026
Composing a decision letter and deciding on reviewer comments to be addressed/overruled is THE single most important task for which we have editors, IMO. If you get a decision from a journal with zero guidance and a laundry list of unreasonable reviewer demands, the journal editor has FAILED.
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Michael Hendricks 🇨🇦 @michaelhendricks.bsky.social · 09/07/2026
You also don't have to do an editor's job of deciding if a paper "fits" or is "impactful enough" for their journal, because you're a scientist and not a marketing agent for the publisher.
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Reposted by Vladimir Volkov 🇺🇦
Randall Munroe @xkcd.com · 08/07/2026
Offside xkcd.com/3268/
Comic. [chessboard with red dotted line and flag at second line. Highlighted rook is positioned next to King behind the red line.]  [caption] I thought I had checkmate, but I didn’t realize my rook was offside.
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Alex Radzisheuskaya @a-radzisheuskaya.bsky.social · 08/07/2026
1/ Very excited to share the first publication from my lab! In this work, we developed an efficient strategy to precisely mutate mammalian histone genes in their native genomic context using CRISPR prime editing: www.nature.com/articles/s41...
nature.com
Identifying critical lysines in mammalian histone H3 with high-throughput CRISPR prime editing - Nature Genetics
This study uses a precise and efficient clustered regularly interspaced short palindromic repeats (CRISPR) prime editing system to substitute lysine residues in histone H3, individually or in combinat...
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Vladimir Volkov 🇺🇦 @vladimirvolkov.bsky.social · 07/07/2026
School of Biological and Behavioural Sciences at QMUL @qmulsbbs.bsky.social is looking for early/mid career fellows to sponsor. We offer a diverse and welcoming environment, pro-promotion attitude, and excellent facilities. Details via the link below www.qmul.ac.uk/sbbs/researc...
qmul.ac.uk
Research Fellowships - School of Biological and Behavioural Sciences
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Thibaut Brunet @thibautbrunet.bsky.social · 30/06/2026
Happy to see many admired colleagues in here! congrats @audeber.bsky.social @frelab.bsky.social @centriolelab.bsky.social @sulianamanley.bsky.social @minclab.bsky.social @yehumoran.bsky.social @matosches.bsky.social (and many healthily offline ones)
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Ran Blekhman @blekhman.bsky.social · 27/06/2026
I wanted to like QED's new 1% preprint ranking. I really did. But the more I looked at the data, the more uncomfortable it made me. Here is my full peer review. open.substack.com/pub/blekhman...
open.substack.com
My Peer Review of The 1%
I wanted to like QED's new 1% ranking. I don't.
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Philippe Bastin's Lab @bastinlab.bsky.social · 26/06/2026
Beautiful videos nicely explaining microtubules! Congratulations to Renaud Chabrier and Casten Janke 👍 www.youtube.com/watch?v=dVbv...
youtube.com
Microtubules | Scientific Animated Short Film 2026
YouTube video by Drawing Intelligence
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Reposted by Vladimir Volkov 🇺🇦
Richard Sever @richardsever.bsky.social · 26/06/2026
“the academic community is enormously heterogeneous and it’s almost impossible to keep everyone happy” Never a truer word said in this analysis of downstream consequences of openness by @jacoates.bsky.social ripplingideas.org/2026/06/26/t...
ripplingideas.org
The 1% club and the rocky road ahead for bioRxiv
The recent launch of qed’s “top 1%” preprint ranking has sparked controversy, with concerns about its arbitrary nature, potential harm to authors, and low-quality inclusions. Whil…
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Reposted by Vladimir Volkov 🇺🇦
Marcin J. Suskiewicz @msuskiewicz.eurosky.social · 25/06/2026
I'm old enough to remember QED's authors said it's just providing an author with internal feedback, and emphatically isn't trying to mimic human review. Now it's compared to human review or journal selectivity and used to rank (other people's) work. The authors seem to ignore the black box aspect1/3
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Harmit Singh Malik @harmitmalik.bsky.social · 24/06/2026
I know it seems like a heretical idea, but one way to figure out if a preprint is really interesting (to you) is... to read the preprint. Then, in the spirit of sharing, send a note to authors: a simple kudos or a more detailed question. I do this a dozen times a year. It's awesome. Try it.
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Reposted by Vladimir Volkov 🇺🇦
Yasin Dagdas @plantophagy.bsky.social · 24/06/2026
“Glam journals are awful! We shouldn’t care about journal names or IF.” hey, here’s a new metric that we should all use to judge science @qedscience.bsky.social metrics 😒
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Wieczorek Lab @mike-wieczorek.bsky.social · 23/06/2026
New preprint! In collaboration with the Steinmetz Lab at PSI we report cryo-EM structures of microtubules at up to 1.9 Å (!) resolution & in different nucleotide state mimics, suggesting a mechanism for lattice-induced GTP hydrolysis and why it leads to catastrophe: tinyurl.com/7cjrf863
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Jo Judernatz @jojudernatz.bsky.social · 12/06/2026
Glad to see the work of my PhD on the manchette microtubule now out in @embojournal.org: doi.org/10.1038/s443...
doi.org
SPACA9 and MNMIP1 bridge the seam of spermatid manchette microtubules - The EMBO Journal
The manchette is a transient microtubule (MT)-based structure that is vital for the correct shaping of sperm during spermiogenesis. Throughout spermiogenesis, the manchette retains structural integrity for several days, raising the question of how its MTs are regulated. Here, using cryo-electron tomography of manchettes isolated from rat testes, we find that manchette MT ends are structurally diverse. We show that the MT-binding protein CLASP2 is present throughout the manchette and likely regulates both MT ends. Using cryo-electron microscopy single particle analysis and super-resolution microscopy, we reveal that SPACA9 and MNMIP1 (SH3D21) bind to the seam of manchette MTs from the luminal side. SPACA9 binds to both α- and β-tubulin of protofilament 1 but does not interact directly with protofilament 13, while MNMIP1 binds directly to protofilament 13. MNMIP1 further extends and threads through the MT lattice at the seam. Our study reveals a novel seam MT inner protein complex with a unique binding mode, providing a plausible explanation for MT regulation that maintains manchette integrity over an extended period.
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Reposted by Vladimir Volkov 🇺🇦
Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 16/06/2026
With a motivating push from @christlet.bsky.social I made a new Fiji plugin, CurveMorph. The idea was to create a tool for kymograph generation along the dynamic (bending/shaking) filament shapes (microtubules, cilia, neurites, etc). The logo was made using the plugin. github.com/UU-cellbiolo...
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Tzviya Zeev-Ben-Mordehai @tzviyazbm.bsky.social · 13/06/2026
Fantastic work of @jojudernatz.bsky.social Revealing a novel seam binding complex in spermatid microtubules
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Helen Foster @helenfoster.bsky.social · 11/06/2026
There are lots of exciting opportunities to join the in situ structural biology community at Leeds this Autumn - 2 studentships in the Cheney PhD program (astbury.leeds.ac.uk/cheney-phd/) and I am recruiting a PhD student and research assistant. Please share and send any future tomographers our way!
astbury.leeds.ac.uk
Cheney Scholarship PhD Programme : The Astbury Centre for Structural Molecular Biology - "Understanding Life in Molecular Detail"
Applications are open for 2 PhD student places.  Closing date for applications is Thursday 26 June, 5pm. Interviews will be held on 9th July 2026. The Cheney Scholarship is a prestigious 4-year PhD pr...
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Jens Schmidt @jenscs83.bsky.social · 11/06/2026
I am looking to recruit 2 postdoctoral fellows to the lab to work on a recently funded project focused on class switch recombination in B cells. If you are interested in immunology, gene expression, and RNA and protein single molecule imaging, please reach out (schmi706@msu.edu). Please share!
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Michael Okun @michael-okun.bsky.social · 10/06/2026
I’ve officially resigned as Associate Editor for Frontiers in Systems Neuroscience. It used to be a reputable journal, but became a case study in how forced automation destroys academic integrity. 👇
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Mir Lab @mirlab.bsky.social · 07/06/2026
1/🧵 Can transcription factor condensate formation be explained without phase separation? Our new preprint introduces SPARK, a simulation tool that reproduces condensate behavior (clustering, fusion, FRAP) from diffusion & binding kinetics alone. Movie: 60 sec FRAP sim www.biorxiv.org/content/10.6...
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Reese Richardson @reeserichardson.bsky.social · 05/06/2026
The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: 🖌️ Dozens more images with duplications or painting 🖨️ Hundreds of blots that all share the same background (behold slideshow below)
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Emily Hunt @emily.space · 05/06/2026
I am SO sick of headlines like this. The public sees "AI" as being LLMs/ChatGPT, not an ML algorithm - and articles like this mislead the public into thinking that LLMs are discovering novel things. It's a cool thing! I'm excited! But it is lazy reporting to suddenly use "AI" as such a broad term
Headline that reads 'World-first' vaccine designed by artificial intelligence
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