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Stephen Garrett

@stephenrgarrett.bsky.social
690 followers 562 following 12 posts

Postdoctiral Fellow in the Grainger lab at University of Birmingham

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Reposted by Stephen Garrett
Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 29/06/2026
Cool new preprint of a new defence family! Antimicrobial-resistance plasmids encode Evangelion, a widespread DUF4062 anti-phage defence family www.biorxiv.org/content/10.6...
biorxiv.org
Antimicrobial-resistance plasmids encode Evangelion, a widespread DUF4062 anti-phage defence family
Many bacterial anti-phage defence systems are encoded by mobile genetic elements, yet much of this antiviral repertoire remains undiscovered. Antimicrobial-resistance plasmids are well known for disse...
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Jakob T Rostøl @jakob-tr.bsky.social · 20/05/2026
Like a prophage being awakened from its slumber, the phage field has seen a lot of renewed activity during the last decade. Check out our new @natrevmicro.nature.com review on the temperate phage life cycle here to stay up-to-date 🧫🦠 www.nature.com/articles/s41...
nature.com
Revisiting the life cycle of temperate phages - Nature Reviews Microbiology
The life cycle of temperate bacteriophages involves lytic or lysogenic cycles and has historically served as a model for studying genetic regulation. This Review provides an updated overview of these ...
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Augustinas Silale @augustsilale.bsky.social · 02/05/2026
Our study on Bacteroides iron piracy is now out in @pnas.org. We show how surface-exposed lipoproteins bind xenosiderophores with different iron-chelating chemistries and propose a mechanism for xenosiderophore import across the outer membrane. Lots of structures (mostly X-ray this time)!
doi.org
Structural basis of iron piracy by human gut Bacteroides | PNAS
Iron is an essential element that can be growth-limiting in microbial communities, particularly those present within host organisms. To acquire iro...
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The Lister Institute of Preventive Medicine @thelisterinstitute.bsky.social · 29/04/2026
Rejection is part of science. So is resilience. 🔬 Tim Blower and @stewartlab.bsky.social share how setbacks helped shape their careers. We don't talk about this enough. 🔁Please repost and share your own stories of defeat or bouceback. Break the stigma! lister-institute.org.uk/news/resilie...
Head and shoulder photos of Chris Steward (left) and Tim Blower (right). Both are wearing dark navy jackets and navy ties against blurred backgrounds.
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Reposted by Stephen Garrett
Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 23/04/2026
Come and study for a PhD with us on antibiotic-producing Streptomyces, trying to understand the roles of primary metabolic enzymes with additional cellular roles - Details below - please repost www.findaphd.com/phds/project...
findaphd.com
Primary metabolic enzymes in antibiotic-producing Streptomyces bacteria, but not as we know them! at University of Strathclyde on FindAPhD.com
PhD Project - Primary metabolic enzymes in antibiotic-producing Streptomyces bacteria, but not as we know them! at University of Strathclyde, listed on FindAPhD.com
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Reposted by Stephen Garrett
Alex Gao @algao.bsky.social · 16/04/2026
Excited to share our new findings in @science.org on how the DRT3 bacterial defense system uses a reverse transcriptase that builds DNA repeats without a nucleic acid template. Microbes never cease to amaze! www.science.org/doi/10.1126/...
science.org
Science | AAAS
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José R Penadés @jrpenades.bsky.social · 31/03/2026
This paper started as an idea @albertomarina.bsky.social had many years ago… which of course means he was right all along 😄. Some of us just needed a few years (and a lot of experiments) to catch up. Grateful (and slightly humbled) to be part of this. Thanks Alberto! www.cell.com/cell/fulltex...
cell.com
Phages communicate across species to shape microbial ecosystems
Gallego-del-Sol et al. show that arbitrium-coding phages can sense non-cognate peptide signals from other phages to regulate lysis-lysogeny decisions. This crosstalk affects lysis-lysogeny outcomes of...
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Andreas Haag @andreashaag.bsky.social · 30/03/2026
Interested in phages, AMR, and bacterial stress responses? MSc project on Clp proteases and prophage induction in S. aureus 📍 St Andrews Apply by 28 April medicine.st-andrews.ac.uk/news/msc-res...
medicine.st-andrews.ac.uk
MSc (Res) Opportunity – Clp Proteases Control Infection and Lifecycle Decisions in Staphylococcus aureus Phages
Project Title: Clp Proteases Control Infection and Lifecycle Decisions in Staphylococcus aureus Phages Supervisor(s): Primary Supervisor: Dr Andreas Haag (University of St Andrews, School of Medicine)...
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Lori L. Burrows @dr-lori-burrows.bsky.social · 30/03/2026
We are really interested in #phages that use the type IV pilus as receptors, and the ways in which bacteria - like #Pseudomonas - try to escape those phages without crippling themselves permanently in the process. healthsci.mcmaster.ca/hiding-in-pl... @mcmasteriidr.bsky.social
healthsci.mcmaster.ca
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Melanie Blokesch @mblokesch.bsky.social · 29/03/2026
Open postdoc position in my lab on HGT and interbacterial competition. We seek candidates with a PhD in microbiology (or related fields)+ strong 1st-author publications. Curious, highly motivated, and dedicated team players ready to contribute fully are encouraged to apply. Details: tiny.cc/cz01101
tiny.cc
Open Positions
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Uday Tak @snowkaryote.bsky.social · 27/03/2026
Happy to share the final version of my postdoc work on bacterial CBASS immunity with @aaronwhiteley.bsky.social published in @cp-cellhostmicrobe.bsky.social www.cell.com/cell-host-mi...
cell.com
Bacterial 2′,3′-cGAMP activates a SAVED effector to form membrane-disrupting filaments and restrict phage replication
Tak et al. discover that bacteria use 2′,3′-cGAMP, the same signaling molecule employed by mammalian cGAS-STING, for phage defense. In response to phage, 2′,3′-cGAMP activates filament formation of Ca...
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Reposted by Stephen Garrett
Aaron Whiteley @aaronwhiteley.bsky.social · 27/03/2026
Out now–our work on bacterial cGAS-like enzymes making 2′,3′-cGAMP! Read Uday's thread for updates since the preprint including determining our lab's first protein structure and developing a new system to study bacterial STING homologs in phage defense👇
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Patrick Moynihan @pmoyniha.bsky.social · 27/03/2026
We've been we've been working on this for quite a while now (hopefully published soon). Grateful to @proftracypalmer.bsky.social for concinving me & @lislowe.bsky.social that mycobacteria produce inter-bacterial toxins. Team science, led by @sambenedict5.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
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Lori L. Burrows @dr-lori-burrows.bsky.social · 19/03/2026
New paper showing how tailed #phages recognize diverse #Pseudomonas #T4P! Outstanding work by PhD candidate Ikram Qaderi, building on work started a decade ago during my sabbatical in the McArthur lab and in collaboration with the Guarné lab, now at #McGill. @mcmasteriidr.bsky.social
QR code to access 'Structural diversification of phage tail fibres enables recognition of diverse type IV pili'
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Suzie Humphrey @suzieh.bsky.social · 19/03/2026
🚨PhD studentship alert! Join @gailmcconnell.bsky.social, @liam-rooney.bsky.social and I for an exciting imaging project characterising inter-species interactions in the oral microbiome. Details here: www.centreforbiophotonics.com/oralmicrobio... Application deadline 10th April 2026!
centreforbiophotonics.com
Oral microbiome | Centre For Biophoton
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Lori L. Burrows @dr-lori-burrows.bsky.social · 11/03/2026
New paper alert! Outstanding work by PhD candidate Nathan Roberge, great collab with the Ellison and Maxwell labs. #Pseudomonas #phage DMS3 encodes Aqs1, an inhibitor of #T4P assembly ATPase PilB, but how it binds and leads to loss of function was unknown. @mcmasteriidr.bsky.social
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Nature Microbiology @natmicrobiol.nature.com · 09/03/2026
Out Now! Bacterial Schlafen proteins mediate phage defence #MicroSky
go.nature.com
Bacterial Schlafen proteins mediate phage defence
Nature Microbiology, Published online: 09 March 2026; doi:10.1038/s41564-026-02277-8This study highlights that Schlafens are ancient, mechanistically conserved immune effectors that mediate antiviral immunity in organisms ranging from humans to bacteria.
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Cell - a Cell Press journal @cp-cell.bsky.social · 02/12/2025
Now online! The unique architecture of umbrella toxins permits a two-tiered molecular bet-hedging strategy for interbacterial antagonism
dlvr.it
The unique architecture of umbrella toxins permits a two-tiered molecular bet-hedging strategy for interbacterial antagonism
Umbrella toxin particles produced by Actinobacteria contain five spokes tipped with variable lectin domains. Here, Zhao et al. show that these lectins mediate species-specific binding to a previously unrecognized cell surface carbohydrate polymer and propose that the modular nature of umbrella particles enables bet hedging against unpredictable competitor encounters.
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Jorge Moura de Sousa @jmouradesousa.bsky.social · 02/03/2026
➡️ preprint from the lab! Bacteria have loads of antiviral defences in their mobile genetic elements (MGEs). So when MGEs move between bacteria, the defences move with them, generating a fast turnover of defences in bacteria. But what about the antiviral defence turnover in the MGEs themselves? 🤔 🧵👇
biorxiv.org
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James Connolly @ruamicro.bsky.social · 27/02/2026
Another brilliant opportunity to work the fantastic Andreas in St Andrews!
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Andreas Haag @andreashaag.bsky.social · 27/02/2026
🚨 We’re hiring – MRC-funded Postdoc (3 yrs) Research Fellow to investigate how mobile genetic elements interact in Staphylococcus aureus and shape gene transfer and pathogenicity. University of St Andrews Closes 31 March 2026 www.jobs.ac.uk/job/DQR250/r... Enquiries: afh22@st-andrews.ac.uk
jobs.ac.uk
Research Fellow at University of St Andrews
Searching for an academic job? Explore this Research Fellow opening on jobs.ac.uk! Click to view more details and browse other academic jobs.
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Andreas Haag @andreashaag.bsky.social · 25/02/2026
📢 Funded PhD in molecular microbiology & phage biology How do bacterial stress responses control prophage activation and horizontal gene transfer? Join us at St Andrews to dissect Clp protease–mediated regulation in Staphylococcus aureus. Apply: www.findaphd.com/phds/project...
findaphd.com
Protease-Controlled Prophage Activation in Staphylococcus aureus: New Mechanisms Driving Antimicrobial Resistance and Virulence at University of St Andrews on FindAPhD.com
PhD Project - Protease-Controlled Prophage Activation in Staphylococcus aureus: New Mechanisms Driving Antimicrobial Resistance and Virulence at University of St Andrews, listed on FindAPhD.com
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Rob Fagan @robfagan.bsky.social · 19/02/2026
New paper from us. If you're interested in genetic manipulation of Clostridia, we have a few new tools for you! 36 new plasmids - all available from @addgene.bsky.social www.microbiologyresearch.org/content/jour... #microsky
microbiologyresearch.org
A set of genetic tools for use in Clostridioides difficile and related species
The Clostridia are a phylogenetically diverse group of anaerobic, spore-forming bacteria that include species of medical, veterinary and industrial importance. The last two decades have seen major adv...
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David Bikard @dbikard.bsky.social · 28/01/2026
🚨 Hiring Alert! 🚨My lab at Institut Pasteur is recruiting several Postdocs! We have exciting open projects in: 🦠 Synthetic Biology and🛡️ Bacterial Immunity. Come do great science with us in the middle of Paris! 🇫🇷🥐 research.pasteur.fr/en/job/postd...
research.pasteur.fr
Postdoctoral position - Synthetic Biology / Bacterial Immunity - Research
The Bikard lab at Institut Pasteur in Paris is seeking to hire postdoctoral researchers. We are investigating bacteria / bacteriophages interactions, and the genetic innovation that happens at this in...
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Jason Wilson @jasonwils.bsky.social · 02/02/2026
It was great to play a part in this study, using all of the work on alphaproteobacterial GTAs to help inform and identify key tell-tale patterns of GTAs in the human gut microbiome. I'm sure there will be many great followup studies on these fascinating particles. www.nature.com/articles/s41...
nature.com
Large-scale capsid-mediated mobilisation of bacterial genomic DNA in the gut microbiome - Nature Communications
Here, the authors show that packaging of bacterial DNA by phage-like particles is widespread in the gut microbiome, with activity of gene transfer agents being prominent in Oscillospiraceae and Rumino...
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Reposted by Stephen Garrett
Charles Winterhalter @winterhalterlab.bsky.social · 23/01/2026
E. coli is the leading bacterium causing death from AMR infections worldwide. If you'd like to explore approaches to exploit the DNA damage response as alternative antimicrobial, please apply to the following PhD studentship available in my lab starting October 2026: www.findaphd.com/phds/project...
findaphd.com
Exploiting the bacterial DNA damage response as an alternative antimicrobial at Newcastle University on FindAPhD.com
PhD Project - Exploiting the bacterial DNA damage response as an alternative antimicrobial at Newcastle University, listed on FindAPhD.com
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James Connolly @ruamicro.bsky.social · 23/01/2026
PhD position available in our team to study how UPEC exploits metals to successfully colonise the host gut. Cool collaboration with @thecopperdoctor.bsky.social and @banzhaflab.bsky.social Please share and get in touch for more details
findaphd.com
Microbial metal-head: the integrated roles of metal homeostasis in host-pathogen interaction at Newcastle University on FindAPhD.com
PhD Project - Microbial metal-head: the integrated roles of metal homeostasis in host-pathogen interaction at Newcastle University, listed on FindAPhD.com
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Emmanuele Severi @emmseveri.bsky.social · 24/01/2026
#microsky #phagesky #phage defence www.science.org/doi/10.1126/...
science.org
Bacteriophages mobilize bacterial defense systems via lateral transduction
Bacteriophages and PICIs spread bacterial defenses via lateral transduction, shaping microbial immunity and pathogen evolution.
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Patrick Moynihan @pmoyniha.bsky.social · 02/12/2025
If you or someone you know is looking for a post-doctoral position working on mycobacterial envelope biology, please get in touch. I am recruiting here at the University of Western Ontario in London, Ontario, Canada.
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Stephen Garrett @stephenrgarrett.bsky.social · 25/11/2025
Very happy to have been part of this work from the Mariano lab, identifying 11 hotspots enriched in phage defence systems in Pseudomonas aeruginosa. It was great to get the chance to collaborate with @giusym1990.bsky.social again! academic.oup.com/nargab/artic...
academic.oup.com
Validate User
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Giusy Mariano @giusym1990.bsky.social · 21/11/2025
Excited to share our new study! Great fun working again with my good friend @stephenrgarrett.bsky.social — always a highlight! Huge thanks to fantastic co-authors @samkaytucker.bsky.social, @drandyjroe.bsky.social and our star technician Vojtech Pavelka. academic.oup.com/nargab/artic...
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Rémi Fronzes @fronzeslab.bsky.social · 21/11/2025
Our latest T7SS study is now out in Science Advances! We solved the cryoEM structure of the T7SSb core unit (T7bCU) composed of YukB, YukC, and YukD from Bacillus subtilis, revealing how these components assemble within the secretion machinery. www.science.org/doi/10.1126/...
science.org
A ubiquitin-like protein controls assembly of a bacterial type VIIb secretion system
Cryo-EM structure reveals how a ubiquitin-like protein orchestrates assembly of a bacterial weapon system.
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Rob Fagan @robfagan.bsky.social · 19/11/2025
There's just over 2 weeks left to apply for a fully funded PhD studentship with us working on C. difficile vancomycin resistance. Two more studentships - linked in the thread below - close in early January
findaphd.com
MRC DiMeN Doctoral Training Partnership: Doubling down: determining the dual function of VanT in C. difficile antibiotic resistance. at University of Sheffield on FindAPhD.com
PhD Project - MRC DiMeN Doctoral Training Partnership: Doubling down: determining the dual function of VanT in C. difficile antibiotic resistance. at University of Sheffield, listed on FindAPhD.com
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Emmanuele Severi @emmseveri.bsky.social · 18/11/2025
#microsky #phagesky Intriguing instance of a reversible type of mutation from #phage exposure www.biorxiv.org/content/10.1...
biorxiv.org
The repertoire of resistance mutations selected by a Pseudomonas aeruginosa type IV pilus-targeting lytic bacteriophage
P. aeruginosa type IV pili (T4P) are complex surface-exposed nanomachines used for twitching motility and biofilm formation. Exposure to bacteriophages that use T4P as their primary receptor can selec...
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Lorena Fernández @lore-fermar.bsky.social · 17/11/2025
PhD opportunity (unfortunately UK home students only) to work on nanoparticles to combat AMR with @forganross.bsky.social and me in UoG. If you have a microbiology background and an interest in chemistry this would be a perfect project for you! Please share!
gla.ac.uk
University of Glasgow - Colleges - College of Medical, Veterinary & Life Sciences - MVLS Graduate School - PhD Research Opportunities - College Futures Themes PhD Programme - Projects - Advanced Diagn...
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Andreas Haag @andreashaag.bsky.social · 17/11/2025
🚨 PhD opportunity! 🚨 Join us at St Andrews to study how multiple prophages shape bacterial behaviour & AMR. Co-supervised with @tatianadimitriu.bsky.social This is a competition-based EASTBIO PhD. Full details and the application link are in the advert 👇 www.findaphd.com/phds/project...
findaphd.com
EASTBIO: When Phages Collide: Understanding How Multiple Prophages Shape Bacterial Behaviour at University of St Andrews on FindAPhD.com
PhD Project - EASTBIO: When Phages Collide: Understanding How Multiple Prophages Shape Bacterial Behaviour at University of St Andrews, listed on FindAPhD.com
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Suzie Humphrey @suzieh.bsky.social · 16/11/2025
A fantastic opportunity with two amazing supervisors!
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Emmanuele Severi @emmseveri.bsky.social · 15/11/2025
PhD opportunity in the lab of a young PI who’s simply going stratospheric, on using #phage for water treatment. What’s not to like? You can’t miss this chance. #microsky #phagesky
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Giusy Mariano @giusym1990.bsky.social · 15/11/2025
🚨 PhD Opportunity 🚨 Interested in microbiology, phages & water security? Join me and Prof Cindy Smith to test phages as a sustainable alternative to chlorine in drinking-water biofilters. Metagenomics, phage discovery & ecology — all in one exciting project! Apply: www.gla.ac.uk/colleges/mvl...
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Cascales Lab @cascaleslab.bsky.social · 15/11/2025
Happy to share the last paper form the lab: Specialized shuttle proteins recognize T9SS signals and target effectors to their final destinations. Great work by @maellepllt.bsky.social, led by @thicoz.bsky.social in collaboration with @audebertstephane.bsky.social www.nature.com/articles/s42...
nature.com
Specialized shuttle proteins recognize Type IX secretion signals and target effectors to their final destinations in Flavobacterium johnsoniae
Communications Biology - Bacteroidota use the Type IX secretion system to secrete proteins with a conserved C-terminal domain (CTD) secretion signal domain. Type B CTDs require specific shuttle...
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Kevin England @kevinengland.bsky.social · 15/11/2025
Bacteria export alarmone synthetases that produce (p)ppApp and (p)ppGpp 🦠🤯 From Boyuan Wang and John Whitney journals.asm.org/doi/10.1128/...
journals.asm.org
Bacteria export alarmone synthetases that produce (p)ppApp and (p)ppGpp | mBio
Alarmone synthetases are intracellular enzymes that promote bacterial survival by responding to environmental stress. Although extracellular alarmone production has been reported in Streptomyces, the ...
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Harry Low’s Lab @lowlab.bsky.social · 04/11/2025
Please RT. Post-doc opportunity alert! 💥 closing 10th December.. Come join our team (www.thelowlab.org) at Imperial, London, working on the structure and mechanism of bacterial secretion systems. For more details and to apply please see www.imperial.ac.uk/jobs/search-...
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Aude Bernheim @audeber.bsky.social · 04/11/2025
Hi everyone, a few years ago, we started a list of labs studying bacterial immunty for students, editors, conference organizers... (currently n=79). Update time ! Send me a message to 1) add your lab or others 2) Correct info docs.google.com/spreadsheets... #Phagesky #Microsky
docs.google.com
Labs in bacterial immunity
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Willem van Schaik @wvschaik.bsky.social · 18/10/2025
Remarkable increase in vancomycin resistance among clinical Enterococcus faecium isolates in Italy (from 11.5% in 2015 to 32.4% in 2023). aricjournal.biomedcentral.com/articles/10....
aricjournal.biomedcentral.com
Temporal trend and individual and hospital characteristics associated to vancomycin-resistant Enterococcus faecium bloodstream infections: a retrospective analysis from the national surveillance syste...
Background Several countries have reported an increase in vancomycin-resistant Enterococcus faecium (VREF), a pathogen classified by the WHO as a high-priority threat due to its role in healthcare-ass...
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Lori L. Burrows @dr-lori-burrows.bsky.social · 13/10/2025
New paper alert! We used our fav technique, genetic suppression, to understand how FimX controls function of the T4P PilB motor ATPase in Pseudomonas aeruginosa. Great collab with the Ellison lab at U Georgia who helped with some fancy microscopy to capture pilus dynamics! doi.org/10.1371/jour...
doi.org
Twitching motility suppressors reveal a role for FimX in type IV pilus extension dynamics
Author summary Type IV pili enable Pseudomonas aeruginosa to attach to surfaces, move (twitch), and form biofilms. Pilus extension is powered by the motor protein PilB, which is regulated by other fac...
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Stephen Garrett @stephenrgarrett.bsky.social · 08/10/2025
Some really cool work from @shelbyeandersen.bsky.social in the @duerkoplab.bsky.social using a new approach to identify novel phage defence systems.
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Giusy Mariano @giusym1990.bsky.social · 01/10/2025
🚨PhD Opportunity Alert🚨 Join me, @suzieh.bsky.social and @walllabuoglasgow.bsky.social to investigate how environment shapes anti-phage defences & prophage–prophage conflict in Pseudomonas aeruginosa. Apply here: www.gla.ac.uk/postgraduate...
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Justine Rudkin @scousemicrobe.bsky.social · 30/09/2025
PhD opportunity to come and work in Glasgow, developing advanced tissue culture models to study Staphylococcus aureus colonisation and infection #microsky #PhD #DTPprogram Enquiries from potential applicants are welcome. www.gla.ac.uk/postgraduate... www.findaphd.com/phds/program...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Justine Rudkin
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Stephen Garrett @stephenrgarrett.bsky.social · 16/09/2025
Really excited to share my first paper from the Whitney lab, alongside an amazing grad student, Polina. Here we identify a chaperone family required for the folding of a central domain of T7SS toxins, and solve the structure of the chaperone-toxin complex. www.pnas.org/doi/10.1073/...
pnas.org
A widespread family of molecular chaperones promotes the intracellular stability of type VIIb secretion system–exported toxins | PNAS
To survive in highly competitive environments, bacteria use specialized secretion systems to deliver antibacterial toxins into neighboring cells, t...
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Alexander Belyy @alexanderbelyy.bsky.social · 14/09/2025
In our new article, we show how P. aeruginosa, a major cause of chronic respiratory infections in #cysticfibrosis (CF), uses the Type VI Secretion System #T6SS and specific #toxins to eliminate competing bacteria www.cell.com/cell-reports... #cryoEM @dshatskiy.bsky.social @jakecolautti.bsky.social
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