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Augustinas Silale

@augustsilale.bsky.social
192 followers 138 following 13 posts

Structural biology, membrane proteins, microbiology. Postdoc. Newcastle upon Tyne. 🧪🧫❄️🔬🇱🇹🏳️‍🌈

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Reposted by Augustinas Silale
James Connolly @ruamicro.bsky.social · 14/09/2026
Are you a motivated researcher interested in bacteria-host interactions? We have postdoc position available in my lab to join our Wellcome Trust funded collaborative team. We will study the role and regulation of the enigmatic sphingolipids in E. coli. Please share. www.jobs.ac.uk/job/DSX115/r...
jobs.ac.uk
Research Assistant/ Associate in Bacteria-Host Interactions at Newcastle University
Explore an exciting academic career as a Research Assistant/ Associate in Bacteria-Host Interactions. Don't miss out on other academic jobs. Click to apply and explore more opportunities.
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Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Ben Cooper @bfcoop.bsky.social · 18/09/2026
Really pleased to share our latest preprint, the result of a fantastic Anglo-Scots collaboration www.biorxiv.org/content/10.6... We uncover how the bacterial Rhesus protein NeRh50 diverges from canonical ammonium transporters 👇🧵 #CryoEM #MembraneProteins #MassSpectrometry #AmmoniumTransport
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Kate Beckham @kshbeckham.bsky.social · 18/09/2026
Heading home after a great EMBO TB meeting in Paris. Always such an exciting meeting giving a great overview of what is happening in the field @hrryflwr.bsky.social did a great job presenting his poster as well :D #embocomplexinfections @embo.org @lkremer1.bsky.social @figlegend.bsky.social
catching up with Laurent and Shu-Sin
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 25/08/2026
Characterizing the interaction of a type VII-secreted antimycobacterial toxin with its small helical partner proteins www.biorxiv.org/content/10.64898/20…
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Nature Microbiology @natmicrobiol.nature.com · 17/08/2026
Out Now! Quinone-transporting filaments expand bioenergetic capacity in Gram-positive Bacillota #MicroSky
go.nature.com
Quinone-transporting filaments expand bioenergetic capacity in Gram-positive Bacillota
Nature Microbiology, Published online: 17 August 2026; doi:10.1038/s41564-026-02450-zBacillus subtilis Ncp and NADH dehydrogenase form tube-like filaments with phospholipid-lined chambers that associate with quinones, which can expand bioenergetic capacity and support respiratory electron transfer.
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Lis Lowe @lislowe.bsky.social · 15/08/2026
Also #glycotime of course! The enzymes are GH172 arabinofuranosidases that break down mycobacterial cell wall glycans. They multimerise into dimers/trimers/hexamers/dodecamers and they are (I admit I’m biased) beautiful enzymes!
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Lis Lowe @lislowe.bsky.social · 15/08/2026
New preprint out - Jenn’s hard work over the last few years collaborating with @jnb-lab.bsky.social, Overkleeft Lab in Leiden, Spencer Williams, Hannah Bridges at Cryosparc and @pmoyniha.bsky.social. Feat. her beautiful 1.5A cryo structure with a covalent inhibitor 😍. www.biorxiv.org/content/10.6...
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Jamie Blaza @jnb-lab.bsky.social · 10/08/2026
Permanent academic position as a Lecturer in cryo-ET open at York. We are looking for someone to lead a research program making the most of the stunning advances occurring in cryo-ET. It's a research and teaching post but with a focus on research in the early years. jobs.york.ac.uk/vacancy/lect...
jobs.york.ac.uk
Jobs - The University of York
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Cascales Lab @cascaleslab.bsky.social · 07/08/2026
Happy to share our latest review on the "Structure and function of the #T9SS for protein secretion and cellular motility" to be published in the incoming volume 80 of Annual Review in Microbiology. Kudos to Yaelle Aouizerate and @thicoz.bsky.social ! www.annualreviews.org/content/jour...
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Kate Beckham @kshbeckham.bsky.social · 03/08/2026
Happy to share our recent story on the Type VII secretion system. Here were present new insights into the regulation of secretion mediated by the central pore. Thanks to all authors involved in the work. 🙂
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Alan Cartmell @acartmell47.bsky.social · 27/07/2026
Delighted to have this collaborative work out in @natmicrobiol.nature.com on how A. muciniphila deploys its sulfatases, both their localisation and substrate specificity, to metabolise colonic mucin www.nature.com/articles/s41... #glycotime.
nature.com
Unique adaptations in sulfatases underpin colonic mucin degradation by Akkermansia muciniphila - Nature Microbiology
Structural and biochemical follow-up of a serendipitous discovery reveals that Akkermansia muciniphila carbohydrate sulfatases are uniquely adapted to digest colonic mucins in collaboration with other...
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Katherine Fenn @katherinefenn.bsky.social · 10/07/2026
Read our new paper! We show how the protease BepA binds the BAM complex and undergoes striking conformational changes, embedding its water-soluble lid into the membrane to cleave outer membrane proteins. www.nature.com/articles/s41... #cryoEM #astburycentre
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Tracy Palmer @proftracypalmer.bsky.social · 25/06/2026
This has been such a fun collaboration and a great example of team science
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Lis Lowe @lislowe.bsky.social · 25/06/2026
Out after a lot of hard work from many people. When we first found arabinanase enzymes in mycobacteria we started looking into their roles in cell remodelling & pathogenesis. Did not expect to find that some species had weaponised them to kill competitors! Myco are endlessly surprising. #glycotime
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Tracy Palmer @proftracypalmer.bsky.social · 24/06/2026
Check out our latest T7SS toxin story. These reverse toxins aren’t as rare as we thought!
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Keio University Bio2Q @keiobio2q.bsky.social · 15/04/2026
1)Call for Principal Investigator Positions at Quantum Computing (Q) core bio2q.keio.ac.jp/wp-content/u... 2)Call for Bio2Q Postdoctoral Fellows bio2q.keio.ac.jp/wp-content/u... 3)Call for Bio2Q Q Core Postdoctoral Internships bio2q.keio.ac.jp/wp-content/u...
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Keio University Bio2Q @keiobio2q.bsky.social · 15/06/2026
Open Call for Structural Analysis Facility Staff bio2q.keio.ac.jp/wp-content/u...
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James Connolly @ruamicro.bsky.social · 02/06/2026
Latest research from the lab out now. We examined the role and expression of fimbriae during UPEC bloodstream infection. A real team effort and brilliant collaboration with Mark Schembri’s lab in Brisbane. Thanks to the MRC and BBSRC for supporting our research @ukri.org
journals.plos.org
Yad fimbriae are triggered by host cues and enhance extraintestinal pathogenic Escherichia coli tissue colonisation during bloodstream infection
Author summary Extraintestinal pathogenic Escherichia coli (ExPEC) colonise the human gut without causing disease but can disseminate to the urinary tract and bloodstream. Understanding the mechanisms...
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corrylab.bsky.social @corrylab.bsky.social · 27/05/2026
Excited to share this paper from @yiechanglin.bsky.social showing how lipids can move between bacterial membranes along the bridge like protein TamB. Also happy to be able to post the cool movie. 🎥🌟 #MDsimulations #StructuralBiology doi.org/10.1016/j.bp...
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Alan Cartmell @acartmell47.bsky.social · 27/05/2026
Happy to have this collaborative work with Zach Armstrong now out in Angewandte chemie doi.org/10.1002/anie... . We use a linked assay, coupled with fluorescent probes, to analyse mucin active carbohydrate sulfatase kinetics, cellular location, and inhibition.
doi.org
Fluorogenic Coupled Assays Reveal Catalytic Properties, Inhibition Constants and Cellular Location of Mucin‐Active Carbohydrate Sulfatases
We report plate-based coupled assays to rapidly and quantitatively determine the activity and selectivity of mucin-active carbohydrate sulfatases. This fluorogenic assay further enables inhibitor ide...
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Reposted by Augustinas Silale
Lis Lowe @lislowe.bsky.social · 15/05/2026
First paper for PhD student in the Bolam / Lowe labs Natalia Łoś on a the characterisation of a new CBM family that binds (beta) mannan! #glycotime @natalia-los.bsky.social 🥳🥳 link.springer.com/article/10.1...
link.springer.com
Unusual molecular architecture of a human gut microbiota β-mannanase reveals a new CBM family - Cellular and Molecular Life Sciences
β-mannans are plant structural and storage polysaccharides prevalent in the human diet. Their degradation in the gastrointestinal tract is mediated by the human gut microbiota (HGM) through expression...
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Kesha Josts @kjosts.bsky.social · 14/05/2026
Now online. Great collaboration with the Tidow lab @seegerlab and the @embl SAXS beamline. Capturing transient states of heterodimeric ABC transporter TM287/288 by time-resolved small-angle X-ray scattering: Biophysical Journal www.cell.com/biophysj/ful...
cell.com
Capturing transient states of heterodimeric ABC transporter TM287/288 by time-resolved small-angle X-ray scattering
Structures of the heterodimeric ATP-binding cassette (ABC) transporter TM287/288 have previously been determined in several states indicating large conformational changes during its reaction cycle. Ho...
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Augustinas Silale @augustsilale.bsky.social · 02/05/2026
Our study on Bacteroides iron piracy is now out in @pnas.org. We show how surface-exposed lipoproteins bind xenosiderophores with different iron-chelating chemistries and propose a mechanism for xenosiderophore import across the outer membrane. Lots of structures (mostly X-ray this time)!
doi.org
Structural basis of iron piracy by human gut Bacteroides | PNAS
Iron is an essential element that can be growth-limiting in microbial communities, particularly those present within host organisms. To acquire iro...
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Rémi Fronzes @fronzeslab.bsky.social · 20/04/2026
ComEC structure is out!! 😍 Congratulations to the authors! That’s not an easy one. We have been trying for years to get that structure… We failed and gave up.
science.org
Structural basis for DNA processing and membrane translocation by ComEC in natural transformation
Natural transformation is one of the major pathways of horizontal gene transfer in bacteria, enabling the acquisition of extracellular DNA and its integration into the host genome. ComEC is a membrane...
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Herve Celia @hervecelia.bsky.social · 07/04/2026
www.science.org/doi/full/10....
science.org
Structural insights into the mechanism underpinning iron piracy in pathogenic Neisseria
Neisseria hijacks iron from human proteins for survival and pathogenesis.
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Reposted by Augustinas Silale
Alexey Amunts @amunts.bsky.social · 07/04/2026
65 years after Peter Mitchell’s chemiosmotic theory, we report an association between ATP synthase and the electron transport chain. In the preprint led by @longzhou88.bsky.social, we describe a large supercomplex and show how the supramolecular organization contribute to oxidative phosphorylation 🧵
langtaosha.org.cn
A Supercomplex Incorporating Both Electron Transport Chain and ATP Synthase
The mitochondrial oxidative phosphorylation system powering most aerobic organisms is typically depicted as two spatially segregated machineries(1): electron transport chain complexes I-IV (ETC CI-CIV
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TJ McCorvie @allostericstate.bsky.social · 05/04/2026
2D classes of the 58 kDa sample collected on the 100 keV Tundra TEM with a Falcon C detector at @nusbf.bsky.social @newcastleuni.bsky.social. Still much work to do to optimise the sample & data collection but its cool to see what a 100 keV TEM is capable of. #cryoEM @recon4imd.bsky.social
2D classes of a 58 kDa particle collected on a 100 kev Tundra electron microscope
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Sam Benedict @sambenedict5.bsky.social · 27/03/2026
Unbelievably proud of the work that everyone has put into this paper. Really grateful for such fab colleagues! Mycobacteria continue to be (subjectively) the most interesting bacteria 🤭
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Lis Lowe @lislowe.bsky.social · 27/03/2026
A GH with an immunity protein that binds with nM affinity and looks like this 🤩. Bacteria are always surprising us
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Lis Lowe @lislowe.bsky.social · 27/03/2026
We’ve been sciencing! M abscessus makes a arabinanase toxin to chop up the cell wall of competitor mycobacteria! #glycotime 🦠 thanks to @wellcometrust.bsky.social for the funding that makes this collaborative work possible! Also Sam’s structures are 😍 and Jean-Lou did some lovely biochem
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Chris Stewart @stewartlab.bsky.social · 18/03/2026
🚨 A new piece of the preterm gut microbiome puzzle just fell into place! Bifidobacterium metabolise human milk oligosaccharides (HMOs) in early life — shaping immunity, supporting gut development, and protecting against diseases like necrotising enterocolitis (NEC). www.nature.com/articles/s41...
nature.com
Clostridia from preterm infants metabolize human milk oligosaccharides to suppress pathobionts and modulate intestinal function in organoids - Nature Microbiology
Clostridium perfringens lacking perfringolysin O toxin isolated from preterm infants metabolizes human milk oligosaccharide disialyllacto-N-tetraose to produce metabolites that promote the growth of c...
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TJ McCorvie @allostericstate.bsky.social · 18/03/2026
Great to see Arnaud Basle, facility manager of our structural biology facility @nusbf.bsky.social there representing @newcastleuni.bsky.social 👏
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John Rubinstein @johnrubinstein.bsky.social · 06/03/2026
I've written a review on what I think is an extremely exciting direction in cryo-EM: Cryo-EM of endogenous membrane proteins in their native lipid bilayer Open access in Quarterly Reviews of Biophysics: doi.org/10.1017/S003...
Figure 1. Cryo-EM of abundant protein complexes in native membranes.Figure 2. Cryo-EM of membrane proteins in vesicles.Figure 3. 3D reconstruction of V-ATPase in native synaptic vesicle membranes.Figure 4. Generation of membrane vesicles for structure determination of proteins in their native lipid bilayer.
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cryoEM papers @cryoempapers.bsky.social · 20/02/2026
Structural and functional characterisation of the dextran utilisome from Bacteroides thetaiotaomicron www.biorxiv.org/content/10.64898/2026.02.19.706672v1 #cryoEM
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Charles Bayly-Jones @charlesbj.bsky.social · 18/02/2026
I’ve officially started my lab at Monash University! 🎉 We’re diving into #cellgrowth and #lysosome biology, through the lens of molecular #structure and mechanism. I’m thrilled to say that PhD student scholarships are available—so please share widely and get in touch if you’re interested. 🤩
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Krista Marie, PhD @kristamariephd.bsky.social · 09/02/2026
My latest preprint on the LolB in Bacteroides! Can't delete it, but you can deplete it to basically nothing and cells grow fine, plus lipoproteins still get to the cell surface 🤯 There is still SO much to understand about lipoproteins in Bacteroides!
biorxiv.org
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Syma Khalid @sykhalid.bsky.social · 02/02/2026
A gift of an article from the inimitable Colin Kleanthous as he says a moving farewell to his laboratory. A brave, unrepentant and scientifically brilliant journey is described - please have a read, friends. www.jbc.org/article/S002...
jbc.org
Bacteriocin biophysics: From protein-protein interaction models to navigators of the bacterial cell envelope
Bacteriocins are toxins deployed by bacteria to kill their competitors. Here, I reflect on my laboratory’s work on protein bacteriocins and their immunity proteins from Gram-negative bacteria. We unco...
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James Connolly @ruamicro.bsky.social · 02/02/2026
Still lots of time to apply for this exciting project with us. Please share and encourage interested students to get in touch.
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Kate Beckham @kshbeckham.bsky.social · 23/01/2026
BBSSRC (NEEDL) funded PhD studentship in my lab co-supervised by @thecopperdoctor.bsky.social and @mycobacterium-ncl.bsky.social If you're interested in structural biology and membrane transport processes, check out www.findaphd.com/phds/project... deadline 27th of Feb! Get in touch for more info
findaphd.com
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Kesha Josts @kjosts.bsky.social · 27/01/2026
Fully funded four-year PhD position available in my lab! Combining structural and synthetic biology to understand iron transport. Deadline 27th of Feb, get in touch for more details! www.findaphd.com/phds/project...
findaphd.com
Forged by Iron: Synthetic protein binders to decode bacterial iron transport mechanisms at Newcastle University on FindAPhD.com
PhD Project - Forged by Iron: Synthetic protein binders to decode bacterial iron transport mechanisms at Newcastle University, listed on FindAPhD.com
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Matt Doyle @doylemt1.bsky.social · 13/01/2026
💊 We are excited to share our preprint that describes an inhibitor of the widespread and highly conserved Two-Partner Secretion (TPS) system that is critical for Gram-negative pathogens to export a multitude of diverse virulence factors. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
First inhibitor of a bacterial two-partner secretion system.
Two-partner secretion system transporter proteins (TpsB) are widely conserved across Gram-negative pathogens. TpsB family proteins secrete exoprotein virulence factors that perform a myriad of functions such as adhesion and immune modulation. Despite their incredible importance in bacterial infectious disease, TpsB inhibitors have not yet been discovered. Here, we describe a potent inhibitor of FhaC, a TpsB protein produced by Bordetella spp . FhaC secretes the exoprotein FhaB that is essential for the establishment of whooping cough. We designed a peptide called P1 that we predicted would prevent substrate binding and lock FhaC in a secretion-inactive state. Simulations and biochemical assays supported our hypothesis and identified interactions important for P1 binding to FhaC. Strikingly, we observed that the peptide strongly inhibited FhaB secretion from clinical isolates and broadly reduced correlates of virulence. Together, this work provides a strong case for further development of a novel class of anti-TpsB anti-virulence compounds. ### Competing Interest Statement The authors have declared no competing interest. National Institute of Allergy and Infectious Diseases, R21AI180112
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Louis Wilson @louisflwilson.bsky.social · 05/01/2026
Hi fellow membrane protein #StructuralBiology people! Do you use maltoside detergents / model them in your stuctures? Watch out! ⚠️ Most PDB models of LMNG and GDN are wrong ❌, yet continue to be re-used. Spread the word! See more: doi.org/10.1021/acsc... (w. @sebvidalchem.bsky.social ) #cryoEM
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Kate Beckham @kshbeckham.bsky.social · 17/12/2025
Good news! Erasmus is a great scheme. www.bbc.com/news/article...
bbc.com
UK will rejoin Erasmus student scheme in 2027
The UK left in December 2020 as part of the post-Brexit trade deal with the EU negotiated by Boris Johnson.
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Microbes in Health and Disease @mhd-newcastle.bsky.social · 15/12/2025
Fab afternoon at the MHD festive gathering 🎉 congratulations to the winning quiz team and @johncorrigall.bsky.social for most festive outfit.
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Kate Beckham @kshbeckham.bsky.social · 14/12/2025
www.nature.com/articles/s41...
nature.com
AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination - Nature Methods
An analysis of AlphaFold protein structure predictions shows that while in many cases the predictions are highly accurate, there are also many instances where the predicted structures or parts of pred...
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Ingo Greger @igreger.bsky.social · 12/12/2025
Structure and organization of AMPA receptor-TARP complexes in the mammalian cerebellum | Science www.science.org/doi/10.1126/...
science.org
Structure and organization of AMPA receptor-TARP complexes in the mammalian cerebellum
AMPA receptors (AMPARs) are multimodal transducers of glutamatergic signals throughout the brain. Their diversity is exemplified in the cerebellum; at afferent synapses, AMPARs mediate high-frequency ...
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Syma Khalid @sykhalid.bsky.social · 05/12/2025
Our paper on polymyxin interacting with the E. coli outer membrane is out! Simulations by the very talented @dheerajprakaash.bsky.social www.nature.com/articles/s42... To scale outer membrane protein island simulated at coarse-grained resolution with portions refined at all atom resolution.
nature.com
Polymyxins slow down lateral diffusion of proteins and lipopolysaccharide in the E. coli outer membrane - Communications Biology
Multi-scale molecular dynamics simulations reveal that polymyxins form polymyxin-protein aggregates upon associating with the E. coli outer membrane thereby reducing lateral mobility of outer membrane...
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Dr Katherine Duncan @kateduncan.bsky.social · 02/12/2025
Fantastic to have Prof Matthias Wilmanns from EMBL Hamburg hosted by @kshbeckham.bsky.social to give a @mhd-newcastle.bsky.social seminar on mycobacterial infection #dreamtheme
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Allister Crow @allistercrow.bsky.social · 26/11/2025
Type VII ABC transporters underpin many core activities in the bacterial cell envelope - including efflux, cell division and lipoprotein trafficking. A new paper in PLOS Biology reveals YbbAP-TesA as a novel Type VII system in E. coli. dx.plos.org/10.1371/jour...
dx.plos.org
Structural characterization of the YbbAP-TesA ABC transporter identifies it as a lipid hydrolase complex that extracts hydrophobic compounds from the bacterial inner membrane
In E.coli, three of the four Type VII ABC transporter systems have been structurally characterized. This study solves cryo-EM structures of the fourth Type VII ABC system, YbbAP-TesA, and suggests tha...
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