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Fran Martínez-Jiménez

@franmj88.bsky.social
1K followers 697 following 13 posts

Group Leader of Computational Immunogenomics group at VHIO | Data Mining lead at HartwigMedicalFoundation | Personal account | Advocate for social and environmental justice 🌍 www.franmartinezlab.com

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Reposted by Fran Martínez-Jiménez
Vall d’Hebron Institute of Oncology @vhio.bsky.social · 30/06/2026
🔬 Large-scale cancer genomics can identify biomarkers of treatment non-response, helping spare patients ineffective therapies. New #VHIO–Hartwig Medical Foundation study in @myesmo.bsky.social, first-authored by Joseph Usset and led by @franmj88.bsky.social. ➡️ linke.to/ESMORWFMartinez
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Reposted by Fran Martínez-Jiménez
Vall d’Hebron Institute of Oncology @vhio.bsky.social · 24/06/2026
👏 ¡Enhorabuena, @franmj88.bsky.social ‼️ El jefe del Grupo de Inmunogenómica Computacional del #VHIO recibe el I Premio Joven Investigador Biomédico #FundaciónCobos por sus contribuciones en genómica computacional del cáncer. ➡️ linke.to/PremioCobosMartinezVHIO_Ca… @cerca.cat
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Reposted by Fran Martínez-Jiménez
Vall d’Hebron Institute of Oncology @vhio.bsky.social · 24/06/2026
👏 Enhorabona, @franmj88.bsky.social‼️ El cap del Grup d'Immunogenòmica Computacional del #VHIO rep el I Premi Jove Investigador Biomèdic #FundaciónCobos per les seves contribucions en genòmica computacional del càncer. ➡️ linke.to/PremioCobosMartinezVHIO_Cat @cerca.cat
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Reposted by Fran Martínez-Jiménez
Vall d’Hebron Institute of Oncology @vhio.bsky.social · 11/05/2026
📣 Are you an #MD passionate about research?  Fundació Catalunya La Pedrera #VHIO MD-PhD Fellowship is now open! 🚀 An excellent opportunity for MDs who wish to become experts in translational medicine 👉 linke.to/FellowshipPedreraVHIO2026 📅 Deadline: May 14th @cerca.cat
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Reposted by Fran Martínez-Jiménez
Jamal-Hanjani Lab @jamal-hanjani-lab.bsky.social · 29/04/2026
Excited to share our ‘Evolutionary characterization of lung cancer metastasis’ in #TRACERx & #PEACE, published today in @nature.com in collaboration with @charlesswanton.bsky.social @nickymcgranahan.bsky.social @zaccasimo.bsky.social at @ucl.ac.uk & @crick.ac.uk. www.nature.com/articles/s41...
nature.com
Evolutionary characterization of lung cancer metastasis - Nature
DNA-sequencing data from primary tumours and paired metastases from participants in the TRACERx lung study and PEACE autopsy programme are used to analyse the metastatic diversity of advanced non-smal...
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Reposted by Fran Martínez-Jiménez
Inigo Martincorena @imartincorena.bsky.social · 15/04/2026
Excited to share our latest work in Nature. Applying single-molecule and single-cell DNA sequencing methods, we uncover an extraordinary landscape of somatic mutations in immune checkpoint genes in autoimmune B cells, suggesting that somatic mutations may be key to autoimmunity [1/n] rdcu.be/fdqbr
rdcu.be
Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
Nature - Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
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Reposted by Fran Martínez-Jiménez
Nuria Lopez-Bigas @nlbigas.bsky.social · 15/04/2026
Tumor promotion through the lens of evolution This review grew out of many long conversations, shared ideas, and lively discussions It has been a real pleasure to think together with Allan, Paul, Eve, and Abel about how tumours develop and how carcinogens shape cancer risk rdcu.be/fdC2J
rdcu.be
Tumour promotion through the lens of evolution
Nature - This Review revisits tumour initiation and promotion in light of clonal diversity and the presence of cancer driver mutations in normal tissues, aiming to understand mechanisms that enable...
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Reposted by Fran Martínez-Jiménez
Sasha Gusev @sashagusevposts.bsky.social · 01/04/2026
Monthly median Received to Accepted time (days) at Nature Genetics
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Reposted by Fran Martínez-Jiménez
Eric Topol @erictopol.bsky.social · 20/03/2026
Why should tumor whole genome sequencing (WGS) be done for cancer? In real practice of medicine study of 888 patients with solid cancers, WGS directly led to clinical consequences in over 40% www.nature.com/articles/s41...
nature.com
Real-world clinical utility of tumor whole-genome sequencing in solid cancers - Nature Medicine
In a real-world cohort of 888 patients with solid cancers receiving whole-genome sequencing profiling, actionable biomarkers were identified in 73% of patients, and targeted therapies were associated ...
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Reposted by Fran Martínez-Jiménez
Ana Dueso-Barroso @aduesoba.bsky.social · 08/03/2026
Here's a short guide to good practices for #8M, that we've prepared from the Equality Commission of @vhio.bsky.social.
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Fran Martínez-Jiménez @franmj88.bsky.social · 05/03/2026
‼️Last days to apply for our postdoc position in the group! Please share!! jobs.vhio.net/en/jobs/7256...
jobs.vhio.net
2026-018-01 Postdoctoral fellow in cancer immunogenomics - VHIO
Under the leadership of Josep Tabernero, VHIO is an internationally recognized cancer center. Its multidisciplinary, collaborative model drives scientific progress and innovative cancer treatments.
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Reposted by Fran Martínez-Jiménez
Jose Tubio’s lab - Mobile Genomes @mobilegenomes.bsky.social · 26/02/2026
Today in @science.org: We are pleased to present our last work entitled: "Concurrent L1 retrotransposition events promote reciprocal translocations in human tumorigenesis" by Zumalave et al. www.science.org/doi/10.1126/...
science.org
Concurrent L1 retrotransposition events promote reciprocal translocations in human tumorigenesis
LINE-1 (L1) retrotransposition generates somatic genomic variation in human cancer, but short-read sequencing has limited our understanding of its structural consequences and dynamics. Using long-read...
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Reposted by Fran Martínez-Jiménez
Johanna Joyce @johannajoyce.bsky.social · 04/02/2026
Today is #WorldCancerDay ~1 in 5 people will develop #cancer in their lifetime Each diagnosis affects not just one person, but families, communities, and futures Grateful today for patients, clinicians, researchers & advocates - and to appreciate that progress depends on acting together #WCD2026
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Reposted by Fran Martínez-Jiménez
Fundación FERO @fundacionfero.bsky.social · 09/01/2026
Convocatoria abierta para las Becas FERO 2026! 🔬destinadas a impulsar la investigación oncológica traslacional en España. 6 becas en 4 categorías diferentes 👉 toda la info fero.org/para-investi... #BecasFERO #ConvocatoriaAbierta #OpenCall #FundaciónFERO #FERO
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Reposted by Fran Martínez-Jiménez
Nuria Lopez-Bigas @nlbigas.bsky.social · 10/12/2025
Huge congratulations to Fran on being awarded the ERC Consolidator Grant! 🎉 Such a well-deserved recognition of an outstanding trajectory and a truly creative, exciting proposal on T-cell clonal hematopoiesis. Can’t wait to see the discoveries that come out of this project. So proud of you! 👏✨
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Reposted by Fran Martínez-Jiménez
Vall d’Hebron Institute of Oncology @vhio.bsky.social · 09/12/2025
👏 ¡Enhorabuena Francisco Martínez Jiménez‼️ El jefe del Grupo de Inmunogenómica Computacional del #VHIO ha recibido una Consolidator Grant del @erc.europa.eu para investigar nuevas estrategias de inmunoterapia basadas en clones expandidos de linfocitos T. ➡️ linke.to/ERCFranMVHIO_Cast #ERCCoG
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Reposted by Fran Martínez-Jiménez
Barbara Marte @barbmarte.bsky.social · 26/11/2025
new out in Nature www.nature.com/articles/s41...
nature.com
Polyclonal origins of human premalignant colorectal lesions - Nature
Nature - Polyclonal origins of human premalignant colorectal lesions
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Reposted by Fran Martínez-Jiménez
Trevor Graham @trevorgraham.bsky.social · 05/11/2025
New @natgenet.nature.com paper from the brilliant @eszterlakatos.bsky.social presents evidence that chromatin alterations disrupt antigen presentation & neoantigens in colorectal cancer. Also that immune escape is part of the "Big Bang", at the outset of CRC growth. www.nature.com/articles/s41...
nature.com
Epigenetically driven and early immune evasion in colorectal cancer evolution - Nature Genetics
This study nominates immune escape as an early event in colorectal cancer and shows how this can be driven through both genetic and epigenetic changes.
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Reposted by Fran Martínez-Jiménez
Marc A. Marti-Renom @mamartirenom.bsky.social · 23/10/2025
Fantastic #Blutorial by our friends and colleagues at the @batllelab.bsky.social . We are so happy to collaborate with them. @meritxellnov.bsky.social and Mireia Novell in the lab have participated in this very important piece on metastatic colorectal cancer. 👏🏼👇🏼👇🏼👇🏼 aacrjournals.org/cancerdiscov...
aacrjournals.org
A plastic EMP1⁺ to LGR5⁺ cell state conversion as a bypass to KRAS-G12D pharmacological inhibition in metastatic colorectal cancer
Abstract. Inhibitors of the oncogene KRAS hold promise for treating metastatic CRC (mCRC). Here we show that a selective, covalent small molecule inhibitor of the active (ON) conformation of RAS-G12D,...
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Reposted by Fran Martínez-Jiménez
The Maus Lab @mauslab.bsky.social · 21/10/2025
Postdoc | VHIO, Barcelona Immunotherapies succeed in only ~20% of cases. Help us break resistance by engineering the right environment. Join the Aging & Cancer Lab 🌍 👉 Apply: vhiovidaprogramme.eu/recruitment/ | mauslab.org
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Reposted by Fran Martínez-Jiménez
Eric Topol @erictopol.bsky.social · 08/10/2025
Finding somatic mutations in healthy tissue that can lead to cancer, at scale. Yet another path to primary prevention www.nature.com/articles/s41... www.nature.com/articles/d41...
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Fran Martínez-Jiménez @franmj88.bsky.social · 08/10/2025
1/ 🚀 Excited to share our preprint tackling a key gap in precision oncology: the lack of robust non-response biomarkers to guide clinical decisions. These markers can spare patients from ineffective treatments and ease pressure on healthcare systems. www.biorxiv.org/content/10.1...
biorxiv.org
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Reposted by Fran Martínez-Jiménez
Marc A. Marti-Renom @mamartirenom.bsky.social · 07/10/2025
Working alongside with Fran, a no brainer 👇🏼
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Fran Martínez-Jiménez @franmj88.bsky.social · 04/10/2025
🚨 International Postdoctoral Positions Open at VHIO! 🚨 The VHIO VIDA Postdoctoral Program is now open! We’re a fully funded position for international postdocs to work on cutting-edge exciting projects, develop professionally, and pave the way toward independence. 👉 vhiovidaprogramme.eu
vhiovidaprogramme.eu
Home - VIDA
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Reposted by Fran Martínez-Jiménez
Eric Topol @erictopol.bsky.social · 02/10/2025
How exercise promotes the immune system vs cancer, working through a gut bacteria metabolite www.cell.com/cell/abstrac...
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Reposted by Fran Martínez-Jiménez
Magdalena Skipper @magdalenaskipper.bsky.social · 01/10/2025
The obsession with economic output as a measure of human development puts sustainability on the back burner Time to end the GDP mania Our editorial inspired by a @nature.com paper that looks at how the world should really measure prosperity 🧪 #SGDs #doughnuteconomics www.nature.com/articles/d41...
nature.com
End GDP mania: how the world should really measure prosperity
The obsession with economic output as a measure of human development puts sustainability on the back burner. Researchers can now help to devise better indicators.
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Reposted by Fran Martínez-Jiménez
Magdalena Skipper @magdalenaskipper.bsky.social · 01/10/2025
The richest 20% of nations, with 15% of the global population, contribute more than 40% of annual ecological overshoot; the poorest 40% of countries, with 42% of the global population, experience more than 60% of social shortfall 🧪 A new analysis by Fanning & Raworth www.nature.com/articles/s41...
nature.com
Doughnut of social and planetary boundaries monitors a world out of balance - Nature
A revised ‘Doughnut’ providing a visual assessment of trends in social deprivation and planetary degradation over the past two decades shows more than doubling of global GDP accompanied by accelerating ecological overshoot but only a modest reduction in human deprivation.
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Reposted by Fran Martínez-Jiménez
Molly Przeworski @mollyprz.bsky.social · 02/09/2025
In these dark times, it comes as a rare pleasure to highlight @natanaels.bsky.social ‬ & @marcdemanuel.bsky.social's work on germline and somatic mutations in humans. 1/n www.biorxiv.org/cgi/content/...
biorxiv.org
Collateral mutagenesis funnels multiple sources of DNA damage into a ubiquitous mutational signature
Mutations reflect the net effects of myriad types of damage, replication errors, and repair mechanisms, and thus are expected to differ across cell types with distinct exposures to mutagens, division ...
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Reposted by Fran Martínez-Jiménez
Ivano Amelio @ivanoamelio.bsky.social · 19/07/2025
www.science.org/doi/10.1126/...
science.org
Aberrant basal cell clonal dynamics shape early lung carcinogenesis
Preinvasive squamous lung lesions are precursors of lung squamous cell carcinoma (LUSC). The cellular events underlying lesion formation are unknown. Using a carcinogen-induced model of LUSC with no a...
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Reposted by Fran Martínez-Jiménez
IPBES @ipbes.net · 14/07/2025
Experts are concerned, as a number of scientists 🧪have recorded huge die-offs of insects in nature reserves around the world. The reported collapse of insect populations in supposedly protected regions is part of a newer phenomenon. 🌏🐜 Read more in @theguardian.com:
bit.ly
‘Half the tree of life’: ecologists’ horror as nature reserves are emptied of insects
A new point in history has been reached, entomologists say, as climate-led species’ collapse moves up the food chain even in supposedly protected regions free of pesticides
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Reposted by Fran Martínez-Jiménez
EMBL Events @events.embl.org · 03/07/2025
🚨 You have until 13 July to submit your abstract for #EMBLCanGen 👉 s.embl.org/can25-01-bl 🗓️ 11 – 14 November 2025 📍 EMBL Heidelberg & Virtual Join top scientists and academic clinicians for an inspiring event to connect, collaborate, and accelerate breakthroughs in cancer genomics 🧬
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Reposted by Fran Martínez-Jiménez
Geoff Macintyre @gmaci.bsky.social · 23/06/2025
🚨Chemo treatment upgrade!🚨 Check out our approach to modernise chemotherapy treatment published today in @natgenet.nature.com. From @cniostopcancer.bsky.social #TailorBio @cruk-ci.bsky.social www.nature.com/articles/s41... More details 👇
nature.com
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Luis González Reyes 🌱 @luisglezreyes.bsky.social · 21/06/2025
Tranquis, la tecnología nos salvará www.elsaltodiario.com/cambio-clima...
elsaltodiario.com
Los espejitos de colores de la captura de CO2: la mayor planta del mundo no cubre sus propias emisiones
Una investigación periodística ha revelado que la empresa suiza Climeworks, que desde el 2021 apuesta por la captura de CO2 del aire como “solución tecnológica” a la crisis climática, emite más gases ...
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Reposted by Fran Martínez-Jiménez
Ewan Birney @ewanbirney.bsky.social · 20/06/2025
Powerful stuff from @juliosaezrod.bsky.social who found himself on the other end of the process - as a patient not a computational biology researcher - giving him insight into both research and patient perspectives. Huge credit to Julio for talking about his experiences here
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Fran Martínez-Jiménez @franmj88.bsky.social · 09/06/2025
🌟 Are you passionate about computational immuno-oncology research with real clinical impact? 🌟 Our group is looking for a motivated Bioinformatics Scientist for single-cell transcriptomics🧬💻 See offer here 👉 jobs.vhio.net/en/jobs/6016... #Bioinformatics #SingleCellRNA #Immunogenomics
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Lars Velten @larsplus.bsky.social · 21/05/2025
Out @nature.com: Clonal tracing with somatic epimutations 🧬 Single cell methylome encodes cell state & clonal identity 🔨 EPI-Clone reads out both (+mutations, +RNA) at scale 🩸 Clonal expansions of HSCs are universal from age 50, not driven by CH mutations doi.org/10.1038/s415... 🧵
doi.org
Clonal tracing with somatic epimutations reveals dynamics of blood ageing - Nature
The discovery that DNA methylation of different CpG sites can serve as digital barcodes of clonal identity led to the development of EPI-Clone, an algorithm that enables single-cell lineage tracing th...
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Ana Dueso-Barroso @aduesoba.bsky.social · 16/05/2025
Wrapping up the week after three great days at the @helloeacr.bsky.social 'Defence is the Best Attack' conference. Thanks for the opportunity to (poster) present our work on immunoediting from @franmj88.bsky.social 's lab, and to learn from colleagues in immuno-oncology.
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Elizabeth McKenna @elizsmckenna.bsky.social · 09/04/2025
Now online in Cancer Discovery: Convergent Genetic Adaptation in Human Tumors Developed Under Systemic Hypoxia and in Populations Living at High Altitudes - by Carlota Arenillas, Rodrigo Toledo, and colleagues doi.org/10.1158/2159... @vhio.bsky.social
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Reposted by Fran Martínez-Jiménez
Mariona Graupera @grauperalab.bsky.social · 28/03/2025
If you are interested in vascular malformations you may want to check our new work published today in Cancer Discovery, where we discover a somatic genetic event causing vascular malformations in PTEN hamartoma tumor syndrome (PHTS) aacrjournals.org/cancerdiscov...
aacrjournals.org
Somatic uniparental disomy of PTEN in endothelial cells causes vascular malformations in patients with PTEN Hamartoma Tumor Syndrome
Abstract. PTEN Hamartoma Tumor Syndrome (PHTS) is a rare tumor risk disorder caused by germline loss-of-function mutations in PTEN. Half of these patients develop vascular malformations, a hamartoma c...
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Albert Vilella, PhD. @albertvilella.bsky.social · 28/02/2025
I wrote a deep dive post on Roche SBX announcement this week. Edwin Cuppen (not on #Bluesky) who heads the Hartwig Institute highlights what this new tech means for entities like him.
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Mariona Graupera @grauperalab.bsky.social · 26/02/2025
We are excited to share our work on Context-dependent response of endothelial cells to PIK3CA mutation. A tour the force of many; thank you all for your invaluable contribution. @aangulou.bsky.social @ruibenedito.bsky.social @debocklab.bsky.social @sandradcastillo.bsky.social bit.ly/4blKSqa
bit.ly
Context-dependent response of endothelial cells to PIK3CA mutation
Cancer mutations in the PIK3CA gene cause congenital disorders. The endothelium is among the most frequently affected tissues in these disorders, displaying aberrant vascular overgrowth in the form of...
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Reposted by Fran Martínez-Jiménez
Vall d’Hebron Institute of Oncology @vhio.bsky.social · 24/02/2025
🚨 Exciting news‼️ The first call of our VIDA Postdoctoral Programme is officially OPEN! 🚀 Funded by a Marie Skłodowska-Curie Actions COFUND grant, #VHIOVIDA is recruiting 12 postdoctoral researchers. 🗓️ Deadline for application, March 13 👉 linke.to/VHIOVIDA25 #VHIOAcademy
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Albert Vilella, PhD. @albertvilella.bsky.social · 09/02/2025
A 2.7C global warming and its effect on Arctic ice www.science.org/doi/10.1126/...
science.org
Disappearing landscapes: The Arctic at +2.7°C global warming
Under current nationally determined contributions (NDCs) to mitigate greenhouse gas emissions, global warming is projected to reach 2.7°C above preindustrial levels. In this review, we show that at su...
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Reposted by Fran Martínez-Jiménez
Sinai Immuno @sinaiimmuno.bsky.social · 28/01/2025
Immunology will be for everyone, everywhere, everyday, from driving foundational research to reaping the benefits for health. 🌎 Immunoschool 2025 is open for anyone looking to learn more about key immunotherapy advances over the last decade. FREE TO REGISTER: www.eventbrite.com/e/internatio...
eventbrite.com
International Course of Immunotherapy March 10-12, 2025
Eventbrite - Precision Immunology Institute at the Icahn School of Medicine presents International Course of Immunotherapy March 10-12, 2025 - Monday, March 10, 2025 | Wednesday, March 12, 2025 - Find...
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Joris van de Haar, MD, PhD @joris-vd-haar.bsky.social · 27/01/2025
Magnificent work from Monika Wolkers and team : γδ T cells are the prime anti-tumoral T cells in pediatric neuroblastoma Another case where γδ T cells are the central effectors of anticancer immunity. www.biorxiv.org/content/10.1... @forum-gd.bsky.social
biorxiv.org
γδ T cells are the prime anti-tumoral T cells in pediatric neuroblastoma
High-risk pediatric neuroblastoma patients have a dismal survival rate despite intensive treatment regimens. New treatment options are thus required. Even though HLA expression in neuroblastoma is low and immune cell infiltrates are limited, the presence of tumor infiltrating lymphocytes (TILs) is indicative for better patient survival. Here, we show that most tumor lesions contain viable immune cell infiltrates after induction chemotherapy, with high percentages of CD3+ T cells. We therefore expanded the TILs and tested their anti-tumoral activity. With sufficient starting material, TIL expansion was as efficient as for adult solid tumors. However, whereas TIL products from adult tumors almost exclusively contained αβ T cells, in neuroblastoma-derived TILs, γδ T cells expanded with similar efficacy as αβ T cells. Importantly, the anti-tumor responses in response to autologous tumor digest primarily originated from (Vδ1- and Vδ3-expressing) γδ T cells, and not from αβ T cells. In conclusion, this finding creates a window of opportunity for immunotherapy for neuroblastoma patients, with γδ T cells as potential prime responders. ### Competing Interest Statement The authors have declared no competing interest.
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Pedro Beltrao @pedrobeltrao.bsky.social · 16/01/2025
35% increase in applications to the ERC consolidator grants. This is not sustainable and it will result in too low acceptance rates. The ERC budget needs to be drastically increased. erc.europa.eu/news-events/...
erc.europa.eu
Applications for ERC Consolidator Grants 2025: Facts and figures
The ERC Consolidator Grants 2025 call closed for applications on 14 January 2025.These are the preliminary data on the submitted proposals:
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Marcos Malumbres @mmalumbres.bsky.social · 13/01/2025
The VIDA COFUND Postdoctoral Programme is now open at @vhio.bsky.social . Please visit vhiovidaprogramme.eu for more info and join any of our #cancer #research laboratories in Barcelona! #oncosky #medsky 🧪 malumbreslab.org
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Fran Martínez-Jiménez @franmj88.bsky.social · 14/01/2025
🚨The VHIO VIDA international postdoctoral program is now open!🚨 ✅ Highly competitive conditions supported by MSCA ✅ Translational research environment 🏥 ✅ Career development support The project: 🔬 Investigating metastatic plasticity and the genomic-transcriptomics interplay vhiovidaprogramme.eu
vhiovidaprogramme.eu
VIDA
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Edwin Cuppen @ecuppen.bsky.social · 10/01/2025
Less than a week for registration. Check out the program: www.ccg2025.eu. With keynotes by @nlbigas.bsky.social and @charlesswanton.bsky.social and exciting sessions on clinical implementation and impact, research insights and future developments around cancer whole genome sequencing #ccg2025
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