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Jon Baxter

@drjonbaxter.bsky.social
536 followers 648 following 1 posts

Still thinking that DNA topology is the most interesting aspect of DNA metabolism. ORCiD ID: orcid.org/0000-0002-4455-9717

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Reposted by Jon Baxter
Anton Goloborodko @golobor.bsky.social · 03/09/2026
1/ out in @science.org! We found a new asymmetry in large-scale chromosome structure: sister chromatids are shifted by hundreds of kb in the 5′→3′ direction of their inherited strands! A close collaboration w/ @gerlichlab.bsky.social , led by @flaviacorsi.bsky.social www.science.org/doi/10.1126/...
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Christian Zierhut @zierlab.bsky.social · 21/08/2026
Supremely excited to share our new paper in @natcellbio.nature.com With an updated genetic cGAMP reporter, we reveal that cGAS activation by DNA damage is a rare event, and that cGAS enrichment on intracellular structures cannot be taken as evidence of activation. www.nature.com/articles/s41...
nature.com
A versatile cGAMP reporter reveals principles of cGAS activation by DNA damage and chromosome instability - Nature Cell Biology
Lebrec et al. present a FRET-based cGAS reporter and show that cGAS activation by genotoxic stress is rare and uncoupled from micronuclei. The study implicates R-loop structures and subtypes of chroma...
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Reposted by Jon Baxter
Dirk Remus @dirkremus.bsky.social · 13/06/2026
If you have experience in biochemistry/cryo-EM, are interested in DNA replication, and would like to do a postdoc in New York - our lab has positions available! Just DM or email me with your CV.
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James Dewar @jamesmdewar.bsky.social · 28/05/2026
🧬 ⛓️‍💥 Our paper is now out in @natsmb.nature.com ! We examined the fate of replication forks that collapse at single-strand DNA breaks (SSBs) in vertebrates 🐸, comparing the consequences of collapse at single vs convergent forks. www.nature.com/articles/s41...
nature.com
Distinct repair outcomes from single and convergent replication fork collapse - Nature Structural & Molecular Biology
Here the authors show that collapse of single replication forks causes recombination, end fusions or degradation but does not restart DNA synthesis. In contrast, collapse of convergent forks completes...
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EMBO @embo.org · 18/02/2026
Explore SMC mechanism and regulation at EMBO Workshop "Threads of life: SMC complexes in #chromosome structure and dynamics" in #Bengaluru, IN, 13–18 Dec 2026. Registration/Abstract submission by 1 Apr/1 May meetings.embo.org/event/26-smc-comp… #EMBOThreadsOfLife #genesky #EMBOevents 🧪
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Reposted by Jon Baxter
Bertolin Lab @bertolinlab.bsky.social · 18/02/2026
To kickstart this new Bluesky account: We're hiring! The Bertolin Lab @dundee.ac.uk is looking for a postdoc to work on DNA-end homeostasis & genome stability, funded by Wellcome Trust Award. Exciting science, fantastic environment, founding role in the lab. Details in the flyer — get in touch! 👇
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NealeLab @labneale.bsky.social · 12/02/2026
NOW LIVE!: PhD opening joint with @drjonbaxter.bsky.social at @gdsc-sussex.bsky.social Get in touch and apply if you are interested in any and all of: Chromosomes, Genome Stability, Chromatin and DNA Topology in Mitosis and Meiosis. www.sussex.ac.uk/study/fees-f...
sussex.ac.uk
School of Life Sciences Studentship: How Chromosome ...
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Reposted by Jon Baxter
Dirk Remus @dirkremus.bsky.social · 06/02/2026
Happy to share our perspective on the DNA translocation mechanism by the CMG helicase. DNA translocation by the CMG helicase: the helical inchworm model url: portlandpress.com/biochemsoctr...
portlandpress.com
DNA translocation by the CMG helicase: the helical inchworm model
Abstract. In all cells, hexameric helicases drive the unwinding of parental chromosomal DNA at replication forks to provide the single-stranded DNA templates required by replicative DNA polymerases. D...
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NealeLab @labneale.bsky.social · 03/02/2026
Coming soon! PhD opening joint with @drjonbaxter.bsky.social at @gdsc-sussex.bsky.social Keep a look out and get in touch if you are interested in any and all of: Chromosomes, Genome Stability, Chromatin and DNA Topology in Mitosis and Meiosis.
media.tenor.com
a computer generated image of a dna structure
ALT: a computer generated image of a dna structure
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Reposted by Jon Baxter
Hetan Shah @hetanshah.bsky.social · 01/02/2026
Hot off the press - a letter from the Exec Chair of @ukri.org explaining his plans and in particular the financial position of STFC. It notes curiosity driven research is protected and will make up around half of UKRI spend over the coming period www.ukri.org/news/open-le...
ukri.org
Open letter from Ian Chapman to research and innovation community
UKRI Chief Executive outlines changes to UKRI investment approach, addressing concerns about research funding and the financial position of STFC.
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bioRxivpreprint @biorxivpreprint.bsky.social · 15/08/2025
Single-molecule landscape of DNA replication pausing www.biorxiv.org/content/10.1101/202…
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NealeLab @labneale.bsky.social · 10/08/2025
New topology Pre-print from: @alengronne.bsky.social Condensin and topoisomerases cooperate to relieve topological stress at stalled replication forks: biorxiv.org/content/earl...
biorxiv.org
Condensin and topoisomerases cooperate to relieve topological stress at stalled replication forks
Resolving complex topological structures at replication forks is vital for successful DNA replication, but the mechanisms are little understood. Evidence from diverse eukaryotes suggests that condensi...
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Reposted by Jon Baxter
Roman Staňo @romanstano.bsky.social · 06/08/2025
🧬 Check out our latest paper in the PRL: doi.org/10.1103/7fh5... We use computer simulations and analytically solvable theory to study supercoiled DNA plasmids functionalized by pH-responsive groups. We show how charge annealing can reversibly switch the topological twist to writhe and vice versa.
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NealeLab @labneale.bsky.social · 31/07/2025
So utterly honoured to have been recruited, mentored and supported by this incredibly influential individual. Long may he happily retire. @gdsc-sussex.bsky.social
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Jasmeen Oberoi @jasmeenoberoi.bsky.social · 17/07/2025
📢 New Postdoc opportunity 🧬🧪🩸 Excited to share an MRC funded Research Fellow position is available in my lab @gdsc-sussex.bsky.social to investigate novel approaches to disrupt the function of fusion kinases and their regulation by the HSP90 molecular chaperone system in leukaemia.
jobs.ac.uk
Research Fellow in Cancer Research at University of Sussex
An academic position as a Research Fellow in Cancer Research is being advertised on jobs.ac.uk. Click now to find more details and explore additional academic job opportunities.
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Reposted by Jon Baxter
Aga Gambus @agagambus.bsky.social · 11/07/2025
Very exciting new technology manuscript from @alicepyne.bsky.social lab! High-res AFM + AI pipeline quantifies complex DNA topology. t.co/qxD7o7ASl6 Very happy to contribute with @singlemoleculenev.bsky.social plasmids replicating past barriers in Xenopus egg extract. Congratulation everyone!
t.co
https://doi.org/10.1038/s41467-025-60559-x
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bioRxivpreprint @biorxivpreprint.bsky.social · 11/06/2025
TrAEL-seq captures DNA replication dynamics in mammalian cells www.biorxiv.org/content/10.1101/202…
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Paulina Wanrooij @paulinawanrooij.bsky.social · 08/06/2025
Our newest paper on mitochondrial Topoisomerase 1 shows that Top1mt has only weak endoribonuclease activity and it therefore does not often generate deletions at incorporated ribonucleotides. This helps explain why ribonucleotides are tolerated in mtDNA. Read more: academic.oup.com/nar/article-...
academic.oup.com
The low endoribonuclease activity and lack of rNMP preference of human mitochondrial topoisomerase 1 protect against ribonucleotide-dependent deletions
Abstract. The incorporation of ribonucleotides (rNMPs) into the nuclear genome leads to severe genomic instability, including strand breaks and short 2–5 b
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Reposted by Jon Baxter
Conrad Nieduszynski @conradn.bsky.social · 12/05/2025
New paper! Most human DNA replication initiation is dispersed throughout the genome with only a minority within previously identified initiation zones genomebiology.biomedcentral.com/articles/10.... Identifying human DNA replication initiation sites on single molecules by @nanoporetech.com 1/7
genomebiology.biomedcentral.com
Most human DNA replication initiation is dispersed throughout the genome with only a minority within previously identified initiation zones - Genome Biology
Background The identification of sites of DNA replication initiation in mammalian cells has been challenging. Here, we present unbiased detection of replication initiation events in human cells using ...
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Anton Goloborodko @golobor.bsky.social · 11/04/2025
Earnshaw, Goloborodko, Dekker & Mirny labs are excited to present our latest work, "Rules of engagement for condensins and cohesins guide mitotic chromosome formation" - now accepted!! www.science.org/doi/10.1126/... A short clip describing the key results: www.youtube.com/watch?v=pmvO...
youtube.com
Rules of Engagement
YouTube video by Johan Gibcus
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Albert Gandioso Ubieto @agandioso.bsky.social · 13/03/2025
🚀 Happy to see our new paper in #NAR @narjournal.bsky.social ! 📜🔬 During my postdoc at @irbbarcelona.org , we systematically studied hybrid triplex topology and stability, suggesting a general triplex-mediated regulatory mechanism. 🧬✨ #TriplexDNA #GeneRegulation academic.oup.com/nar/article/...
academic.oup.com
Systematic study of hybrid triplex topology and stability suggests a general triplex-mediated regulatory mechanism
Abstract. By combining in silico, biophysical, and in vitro experiments, we decipher the topology, physical, and potential biological properties of hybrid-
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Reposted by Jon Baxter
Dirk Remus @dirkremus.bsky.social · 06/03/2025
How do replisomes walk on DNA? And what happens when they run into a G-quadruplex? @sahilbatra.bsky.social and @benallwein.bsky.social provide unexpected insight in our latest paper with Richard Hite @mskcancercenter.bsky.social @science.org www.science.org/doi/10.1126/.... Congrats to all authors!
science.org
G-quadruplex–stalled eukaryotic replisome structure reveals helical inchworm DNA translocation
DNA G-quadruplexes (G4s) are non–B-form DNA secondary structures that threaten genome stability by impeding DNA replication. To elucidate how G4s induce replication fork arrest, we characterized fork ...
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Reposted by Jon Baxter
keithcaldecott.bsky.social @keithcaldecott.bsky.social · 10/02/2025
Dear all, Postdoc positions are available to work on (1) the role of DNA strand break repair proteins during DNA replication and (2) the molecular/structural biology of XRCC1 protein complexes, as part of our work on genetic diseases & cancer. Contact me if interested: k.w.caldecott@sussex.ac.uk
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Luke Yates @layates.bsky.social · 11/02/2025
I have a funded PhD position in my lab in @gdsc-sussex.bsky.social (UK fees only). This is an exciting new project using structural biology to investigate proteins involved in ovarian cancer, with opportunities for drug discovery and collaborations with clinicians. Application link below.
sussex.ac.uk
Life Sciences PhD Genome Stability - Molecular basis for DNA damage checkpoint termination : University of Sussex
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Molecular Microbiology Editors @molecularmicro.bsky.social · 04/02/2025
New Review: DNA topoisomerase in Archaea; from Paul Villain and Tamara Basta...featured in a forthcoming special issue on Prokaryotic Chromosome Organization! #MicroSky onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Regulation of DNA Topology in Archaea: State of the Art and Perspectives
DNA topoisomerases are ubiquitous enzymes that play a crucial role in regulating DNA supercoiling which affects fundamental biological processes involving DNA. In this review, we summarize the curren...
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Jon Baxter @drjonbaxter.bsky.social · 31/01/2025
EMBO Workshop – DNA topology and topoisomerases in genome dynamics. 15-19 September 2025 Szklarska Poręba, Poland REGISTRATION NOW OPEN Interested in attending? Visit the website: meetings.embo.org/event/25-dna... Register by: 15 March 2025
meetings.embo.org
DNA topology and topoisomerases in genome dynamics
Topoisomerases are crucial enzymes that ensure genome stability and cell survival. Although topoisomerases were discovered 50 years ago and their impact on DNA supercoiling has been studied since the…
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Reposted by Jon Baxter
Grainger Lab @graingerlab.bsky.social · 21/01/2025
If you're interested in chromosome biology (DNA folding, gene regulation, replication, polymer modelling and more) we're organising the below this autumn. It'd be great to see you there. Please share if you can. :-)
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bioRxivpreprint @biorxivpreprint.bsky.social · 03/01/2025
DNA supercoiling modulates eukaryotic transcription in a gene-orientation dependent manner www.biorxiv.org/content/10.1101/202…
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Cees Dekker @ceesdekker.bsky.social · 13/12/2024
I guess I told you about the fact that SMC proteins like cohesin and condensin are a novel class of molecular motors that make loops into DNA (something we visualized first in 2018). These DNA loops are the fundamental motif that organize our chromosomes. 0/
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Michael Booth @drmikebooth.bsky.social · 13/12/2024
The one time @theguardian.com could rightly use a left-handed DNA image... and they choose right-handed 🤦🏻‍♂️🤦🏻‍♂️🤦🏻‍♂️ @iansample.bsky.social
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Cees Dekker @ceesdekker.bsky.social · 27/11/2024
Latest #CDlab paper in Nucleic Acid Research: academic.oup.com/nar/article/... Great work by Alejandro Martin-Gonzalez, @tismaa.bsky.social ea collaboring with @gruberlab.bsky.social, showing the interplay of DNA supercoiling & ParB condensation, 2 processes that set bacterial genome organization.
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Prasad Jallepalli, MD, PhD @prasad.bsky.social · 23/11/2024
We’ve been using phase lock tubes to streamline phenol-chloroform extractions. Unfortunately they’ve been discontinued everywhere we’ve looked. We recently tried Molykote (vacuum grease with intermediate density compared to aqueous and organic phases) with great results. Also much cheaper.
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Gabrielle Brewer @gabriellebrewer.bsky.social · 21/11/2024
#Chromothripsis leads to the acquisition of multiple genomic aberrations. Now out in Nat Rev Cancer: 1) A #Review from Simovic-Lorenz & Aurelie Ernst, @dkfz.bsky.social, covering mechanistic models of chromothripsis & its role in cancer and progression. 👉 bit.ly/4fy8pFo
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Javier Oliver @javiom.bsky.social · 19/11/2024
www.nature.com/articles/s41...
nature.com
Origins and impact of extrachromosomal DNA - Nature
A study examines the diversity of extrachromosomal DNA elements in cancer, and provides details on the frequency and origin of extrachromosomal DNA and its role in the development of different types o...
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