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Stephan Gruber

@gruberlab.bsky.social
1.3K followers 372 following 83 posts

Microbiologist | Biochemist | Structural Biologist, Lausanne 🇨🇭 | Studying molecular machines (SMC, ParB, Wadjet, Lamassu & more) in Genome Integrity & Nucleic Acid Immunity. 🔬 Lab homepage: wp.unil.ch/gruberlab

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Reposted by Stephan Gruber
Max Planck Institute of Biochemistry @mpibiochem.bsky.social · 02/09/2026
Ten years ago, our director, Stefan Jentsch, passed away. A memorial symposium will be held in his honour on October 23. Many of his former colleagues and friends will be in attendance. Would you like to join? Please register until October 1: ❕https://eveeno.com/256035281 #Ubiquitin #Symposium
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Marc Bramkamp @bramkamplab.bsky.social · 01/09/2026
Still time to apply for a fully funded PhD position in my lab on antimicrobial resistance plasticity in pathogenic Corynebacteria. jobs.uni-kiel.de/jobposting/e...
jobs.uni-kiel.de
wissenschaftliche*r Mitarbeiter*in Zielrichtung Promotion
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Cees Dekker @ceesdekker.bsky.social · 28/07/2026
Shocking sad news: our colleague Ralf Seidel has suddenly and unexpectedly passed away! www.physes.uni-leipzig.de/pdi/profil/n... Ralf did a postdoc in our #CDlab in the early 2000s and became a professor in Leipzig. He was such a kind person. We'll miss him dearly.
physes.uni-leipzig.de
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Kranzusch Lab @kranzuschlab.bsky.social · 13/07/2026
Stunning pre-print from @artemisaev.bsky.social @dbikard.bsky.social and the Wang lab answering long-standing questions about OLD phage defense and extending the concept of "protein complex disassembly" controlling activation of bacterial immunity: www.biorxiv.org/content/10.6...
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Kai Kupferschmidt @kakape.bsky.social · 01/07/2026
“It’s just a microscopic water droplet surrounded by a fatty membrane and stuffed with chemicals and snippets of DNA encoding a mere 36 genes. But it’s also arguably the closest researchers have come to building a living cell from scratch.”🧪 My story in @science.org on a fascinating preprint:
science.org
Lab-created ‘SpudCell’ marks ‘stunning’ step toward building life from scratch
A synthetic cell can now grow and divide—but it’s still far from alive
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Svetlana Dodonova @dodonova-sveta.bsky.social · 19/06/2026
Excited to share our new preprint! 🧬❄️ by brilliant @mdreimann.bsky.social and great collaborators! Using cryo-ET&EM, we reveal archaeal chromatin in a near-native state: variable-beads-on-a-string fibers shaped by growth phase and histone composition #ArchaeaSky www.biorxiv.org/content/10.6...
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Justine Collier @justinecollier.bsky.social · 02/06/2026
I am delighted to share our latest preprint: doi.org/10.64898/202.... Fantastic work from my past and present lab members @flofournes.bsky.social, Sandra Martin and Nicolas Pellaton. Also many thanks to our precious collaborators @gruberlab.bsky.social and to @snsf.ch for funding this research.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 30/05/2026
Genome replication and cell division control by the methylation-sensitive GcrA regulator in Agrobacterium tumefaciens www.biorxiv.org/content/10.64898/20…
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Nature Structural & Molecular Biology @natsmb.nature.com · 20/05/2026
New online: Rap1-mediated steric hindrance protects telomeres from MRX sensing
dlvr.it
Rap1-mediated steric hindrance protects telomeres from MRX sensing
Nature Structural & Molecular Biology, Published online: 20 May 2026; doi:10.1038/s41594-026-01810-xThe authors show that Rap1 protein coverage protects telomeres by physically blocking the Mre11–Rad50–Xrs2NBS1 complex. Longer, denser Rap1 arrays better prevent DNA damage responses, providing a mechanism for how cells detect short telomeres and maintain genome stability
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Thomas Dietterich @tdietterich.bsky.social · 13/05/2026
We are implementing a similar policy at @arxiv.bsky.social. If there is incontrovertible evidence of LLM slop in a paper, this means the authors did not take the time to read the LLM output and we can't trust anything else in the paper. Penalty is 1 year ban from arXiv followed by...
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Tominaga K. (tomiken) @pacyc184.bsky.social · 10/05/2026
Mre11-Rad50 enhances spacer acquisition in a haloarchaeal Type I-B CRISPR-Cas system | bioRxiv www.biorxiv.org/content/10.64898/20…
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Kristina Jonas @krijonas.bsky.social · 06/05/2026
We’re hiring! 🇸🇪🔬
 Tenure-track Assistant Professor in Prokaryotic Microbiology (molecular focus) at Stockholm University. Supportive environment + strong molecular research 👉https://su.varbi.com/en/what:job/jobID:921526/type:job/where:125/apply:1 Please share!!
su.varbi.com
Biträdande lektor i prokaryot mikrobiologi med inriktning mot molekylära processer
Institutionen för molekylär biovetenskap, Wenner-Grens institut (MBW) bedriver experimentell grundforskning inom molekylär cellbiologi, integrativ biologi och infektions- och immunbiologi. Forsknin
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Jan-Willem Veening @veeninglab.com · 24/04/2026
Spring beers with @gruberlab.bsky.social @mblokesch.bsky.social @justinecollier.bsky.social
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Yolanda Schaerli @yschaerli.bsky.social · 12/04/2026
Interested in synthetic biology & microbiomes? 🧬🧫 We are recruiting a PhD student to develop biosensors to study microbe–microbe & microbe–host interactions. In beautiful Lausanne, Switzerland🏔️⛵ @dmf-unil.bsky.social @fbm-unil.bsky.social Apply by 24.05.2026 👇 shorturl.at/6X7M4 Boosts appreciated!
shorturl.at
Career Opportunities: PhD position in microbial synthetic biology (22753)
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Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 10/04/2026
Really cool work from @mblokesch.bsky.social et al Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons www.science.org/doi/10.1126/...
science.org
Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons
Bacteria often survive viral attack and environmental stress by sharing genes that enhance their defenses. The cholera pathogen Vibrio cholerae carries a sedentary chromosomal integron (SCI), a genetic element containing hundreds of mostly promoterless ...
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Melanie Blokesch @mblokesch.bsky.social · 29/03/2026
Open postdoc position in my lab on HGT and interbacterial competition. We seek candidates with a PhD in microbiology (or related fields)+ strong 1st-author publications. Curious, highly motivated, and dedicated team players ready to contribute fully are encouraged to apply. Details: tiny.cc/cz01101
tiny.cc
Open Positions
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Rob Klose @robklose.bsky.social · 01/04/2026
Just a quick reminder that the first of these Associate Professorships have a closing date for applications of April the 8th. Get your application in now! Please repost
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Stephan Gruber @gruberlab.bsky.social · 31/03/2026
Last day to register for the SMC meeting 2026!
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 17/03/2026
AlphaFold database has entered the era of complexes. Together with NVIDIA, DeepMind and EBI, we use ColabFold, OpenFold and MMseqs2-GPU to predict ~31 million complexes (homo & hetro-dimers) resulting in 1.8 million high-quality predictions 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
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LMB-EPFL Graduate Life Sciences Symposium 2026 @lmbphdsymposium.bsky.social · 27/02/2026
‼️Exciting news: we are back‼️ This year marks the 20th anniversary of our graduate student symposium, and we are more than excited to be collaborating with students from the EPFL School of Life Sciences🇨🇭 📅 When? 2nd - 3rd of July 2026 📍Where? MRC Laboratory of Molecular Biology, Cambridge
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Roberto Vázquez Núñez @robertovn.bsky.social · 19/02/2026
Preprint alert 🚨Happy to share my first Posdoc manuscript from the Vos lab @voslab.org. We introduce GATO-seq, a high-throughput, fully in vitro technique that maps RNA polymerases at base pair resolution over time. Using it, we found a new pause state of Pol II: sidetracking tinyurl.com/superpause
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EMBO @embo.org · 18/02/2026
Explore SMC mechanism and regulation at EMBO Workshop "Threads of life: SMC complexes in #chromosome structure and dynamics" in #Bengaluru, IN, 13–18 Dec 2026. Registration/Abstract submission by 1 Apr/1 May meetings.embo.org/event/26-smc-comp… #EMBOThreadsOfLife #genesky #EMBOevents 🧪
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Rajiv McCoy @rajivmccoy.bsky.social · 21/01/2026
Pregnancy loss is common in humans, and chromosomal abnormalities are the leading cause. Using genetic data from ~140,000 IVF embryos, we show that maternal variation in meiosis genes influences recombination and aneuploidy risk. First authors: @saracarioscia.bsky.social & @aabiddanda.github.io
nature.com
Common variation in meiosis genes shapes human recombination and aneuploidy - Nature
Analysis of data from pre-implantation genetic testing sheds light on the genetic basis of meiotic-origin aneuploidy, the leading cause of human pregnancy loss, identifying common genetic variants ass...
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Daniel Benneworth-Gray @danielgray.com · 19/01/2026
COW TOOLS COW TOOLS COW TOOLS
theguardian.com
Back-scratching bovine leads scientists to reassess intelligence of cows
Brown Swiss in Austria has been discovered using tools in multiple ways – something only ever seen in humans and chimpanzees
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Martin Thanbichler @thanbichlerlab.bsky.social · 09/01/2026
Ancestral sequence reconstruction reveals CTP-dependent loading of the bacterial centromere-binding protein ParB as an ancient evolutionary feature Now published: tinyurl.com/4ddhwbb3 Thanks to the Hochberg and Bange labs for the great collaboration!
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Paul & Virginie - Centriole Lab @centriolelab.bsky.social · 17/12/2025
JOB ALERT: Operations Director (DCI–Lausanne). The DCI, a joint initiative of EPFL, UNIL, UNIGE and UNIBE, is recruiting an Operations Director to lead the cryo-EM facility in Lausanne. 📩 Questions: CEO of the DCI: @chgenoud.bsky.social 🔗 Apply here: careers.epfl.ch/job/Lausanne...
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Di Jiang @dijiang319.bsky.social · 19/12/2025
@science.org Chromatin buffers torsional stress during transcription | Science www.science.org/doi/10.1126/...
science.org
Chromatin buffers torsional stress during transcription
During eukaryotic transcription, Pol II must overcome nucleosome obstacles and, because of DNA’s helical structure, must also rotate relative to DNA, generating torsional stress. However, there is lim...
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Helge Fahrnberger @helge.at · 19/12/2025
Verspätungen 2025 an über 100 europäischen Bahnhöfen: Sogar italienische Züge sind pünktlicher als deutsche... 🙈 Quelle: chuuchuu.com/2025wrapped
Europa-Karte mit farbkodierten Punkten. Sehr grün in NL und CH, sehr rot in DE und IT, BE/AT/FR im Mittelfeld.
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Sholto David @sholtodavid.bsky.social · 16/12/2025
Dana-Farber Cancer Institute Agrees to Pay $15 Million to Settle Fraud Allegations Related to Scientific Research Grants. The relator [Sholto David] will receive $2,625,000 under today’s settlement. www.justice.gov/usao-ma/pr/d...
justice.gov
Dana-Farber Cancer Institute Agrees to Pay $15 Million to Settle Fraud Allegations Related to Scientific Research Grants
BOSTON – Dana-Farber Cancer Institute, Inc. (Dana-Farber) has agreed to pay $15 million to resolve allegations that, between 2014 and 2024, it made materially false statements and certifications relat...
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Molecular Cell @cp-molcell.bsky.social · 03/12/2025
Online Now: The Ppl protein senses 3′-hydroxyl DNA overhangs and NTP depletion to halt phage infection Online now:
dlvr.it
The Ppl protein senses 3′-hydroxyl DNA overhangs and NTP depletion to halt phage infection
Xu et al. reveal that the Ppl defense system protects bacteria from phages by acting as a “double-check” security system. It requires two simultaneous phage-induced stresses to activate, a sophisticated mechanism that ensures effective immunity while preventing premature abortive infection.
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Nature Structural & Molecular Biology @natsmb.nature.com · 01/12/2025
New online: DNA topoisomerase I acts as supercoiling sensor for bacterial transcription elongation
go.nature.com
DNA topoisomerase I acts as supercoiling sensor for bacterial transcription elongation
Nature Structural & Molecular Biology, Published online: 01 December 2025; doi:10.1038/s41594-025-01703-5Vidmar et al. use cryo-EM to reveal how bacterial RNA polymerase (RNAP) and topoisomerase I (TopoI) cooperate. TopoI switches conformation, senses DNA supercoils near RNAP and relaxes them. Mutations disrupting this process alter bacterial motility and operon polarity.
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Stephan Gruber @gruberlab.bsky.social · 25/11/2025
The hinge bypass gate paper is finally out! doi.org/10.1038/s414... We show how loop-extruding SMC complexes can maintain DNA entrapment while bypassing obstacles on DNA — including transcription machinery & potentially other SMCs. A lucky convergence of 3 projects lead to the initial discovery!
doi.org
The SMC Hinge is a Selective Gate for Obstacle Bypass - Nature Communications
SMC complexes are ring-shaped motors that fold DNA by extruding loops, but how they navigate large DNA obstacles is unclear. Here, Liu et al., show that SMC complexes bypass obstacles by threading obs...
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Honsworth @drhonsworth.bsky.social · 25/11/2025
Glad to see this out after a rather interesting review/publication process! www.nature.com/articles/s41...
nature.com
The SMC Hinge is a Selective Gate for Obstacle Bypass - Nature Communications
SMC complexes are ring-shaped motors that fold DNA by extruding loops, but how they navigate large DNA obstacles is unclear. Here, Liu et al., show that SMC complexes bypass obstacles by threading obs...
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c0nc0rdance @c0nc0rdance.bsky.social · 17/11/2025
Prashant Singh in the lab of Tina Iverson at Vanderbilt published this image of the bacterial 🦠flagellar motor, a detailed molecular model made possibly by CryoEM 🔬. The similarity to mechanical motors are strong enough we can use terms like stator, rotor, rod & gearing to describe it.
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IMP @impvienna.bsky.social · 10/11/2025
🌍Open call: Junior Group Leader positions! Join a world-class biomedical research institute at the heart of the Vienna BioCenter, where curiosity drives discovery. Lead your own lab, pursue bold ideas, and shape the future of science at the IMP: www.imp.ac.at/career/open-...
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Freya Harrison @friendlymicrobe.bsky.social · 08/11/2025
What Rosalind Franklin truly contributed to the discovery of DNA’s structure. A really informative article, perfect for a weekend coffee read. www.nature.com/articles/d41...
nature.com
What Rosalind Franklin truly contributed to the discovery of DNA’s structure
Franklin was no victim in how the DNA double helix was solved. An overlooked letter and an unpublished news article, both written in 1953, reveal that she was an equal player.
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Stephan Gruber @gruberlab.bsky.social · 07/11/2025
This paper was retracted (by the authors) a long time ago: pubmed.ncbi.nlm.nih.gov/15178751/ However, I cannot find a retraction notice on the DOI page: www.science.org/doi/10.1126/... Is this standard practice, or an oversight? @science.org
pubmed.ncbi.nlm.nih.gov
The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure - PubMed
Condensins are conserved proteins containing SMC (structural maintenance of chromosomes) moieties that organize and compact chromosomes in an unknown mechanism essential for faithful chromosome partitioning. We show that MukBEF, the condensin in Escherichia coli, cooperatively compacts a single DNA …
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Stephan Gruber @gruberlab.bsky.social · 06/11/2025
Very nice Preview by @bramkamplab.bsky.social on the SMC DNA loading paper by our @roisnehamelinf.bsky.social "Weaving the loops of life: DNA loading by loop-extrusion machines in plasmid defense and genome organization" Molecular Cell www.cell.com/molecular-ce...
cell.com
Weaving the loops of life: DNA loading by loop-extrusion machines in plasmid defense and genome organization
Structural maintenance of chromosome (SMC) complexes organize and segregate DNA via loop extrusion, but the mechanism of the initial DNA loading was unclear. In this issue of Molecular Cell, Roisné-Ha...
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Emmanuele Severi @emmseveri.bsky.social · 31/10/2025
#microsky #phagesky Mycobacterium #phage review by Graham Hatfull covering the state of the art www.pnas.org/doi/10.1073/...
pnas.org
All the world’s a phage | PNAS
A renewed interest in bacteriophages has emerged from the explosive discovery of the complex pan-immune bacterial defense system and a revival of t...
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Max Perutz Labs Vienna @maxperutzlabs.ac.at · 31/10/2025
📢 Open Call! The Max Perutz Labs invite applications for a Full Professorship in Integrative Structure Biology with a focus on in situ structural biology using cryo-electron tomography (cryo-ET) and related methods. More details ➡️ tinyurl.com/brswbymu
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phoeberice.bsky.social @phoeberice.bsky.social · 29/10/2025
Really cool! But Bluesky has flipped your picture over - it now shows positively supercoiled left-handed DNA :-(.
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Arne Elofsson @handle.invalid · 24/10/2025
www.nature.com/articles/d41...
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STCmicrobeblog @stcmicrobeblog.bsky.social · 20/10/2025
who would have thought! phage N15 TelN telomerase has more than one job! (and no, it's not 'moonlighting') great work from the gruber lab 👏 #MicroSky + #PhageSky
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The EMBO Journal @embojournal.org · 20/10/2025
E. coli bacteriophage N15 suppresses Mre11-Rad50-mediated end degradation of its linear genome via a telomere-resolution-independent function of its telomere resolvase TelN #RefereedPreprint c/o @reviewcommons.org by @gruberlab.bsky.social www.embopress.org/doi/full/10....
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Stephan Gruber @gruberlab.bsky.social · 20/10/2025
This was a fun collaboration between Ophélie & the @seegerlab.bsky.social using sybody libraries to target the SMC complex in living bacteria. With a suprising finding: the 14 isolated sybodies bind to the middle of the SMC coiled coil rather than the more conserved ATPase heads.
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bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 18/10/2025
Single Domain Antibody Inhibitors Target the Coiled Coil Arms of the Bacillus subtilis SMC complex www.biorxiv.org/content/10.1101/202…
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Molecular Cell @cp-molcell.bsky.social · 09/10/2025
Online Now: Mechanism of DNA entrapment by a loop-extruding Wadjet SMC motor Online now:
dlvr.it
Mechanism of DNA entrapment by a loop-extruding Wadjet SMC motor
Wadjet is an SMC-based prokaryotic defense system that eliminates plasmid DNA. Roisné-Hamelin et al. present structures capturing key steps of its DNA-loading mechanism. This work reveals how Wadjet topologically entraps DNA by SMC dimer rotation around DNA and defines the starting point of loop extrusion by the SMC motor.
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Nature Structural & Molecular Biology @natsmb.nature.com · 14/10/2025
New online: Structure and activation mechanism of a Lamassu phage and plasmid defense system
go.nature.com
Structure and activation mechanism of a Lamassu phage and plasmid defense system
Nature Structural & Molecular Biology, Published online: 14 October 2025; doi:10.1038/s41594-025-01677-4Li et al. show that a Lamassu defense system protects bacteria from phage infection by activating a lethal tetrameric DNA-cutting enzyme. In the absence of phages, a protein clamp holds the enzyme as an inactive monomer, preventing self-damage.
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Kathrin Lang @klanglab.bsky.social · 16/10/2025
🚨Our paper is out! 🥳 Hijacking a bacterial ABC transporter for efficient genetic code expansion. Many congrats to everyone involved - a multi-year effort led by @taruniype.bsky.social @maxfottner.bsky.social www.nature.com/articles/s41... it all started years ago with a failed experiment 🧵👇 1/9
nature.com
Hijacking a bacterial ABC transporter for genetic code expansion - Nature
Bacterial ATP-binding cassette (ABC) transporters can be utilized and engineered to transport non-canonical amino acids into Escherichia coli for highly efficient synthesis of proteins with novel func...
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Stephan Gruber @gruberlab.bsky.social · 15/10/2025
And also the bacterial telomere protection paper by Maya, Nicolas, & Ania is out: doi.org/10.1038/s443... Great experience with @reviewcommons.org & @embojournal.org Feels just right to have the manuscript reviewed without having to target a specific journal from the start.
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