Javier Oliver @javiom.bsky.social · 05/12/2025www.pnas.org/doi/epdf/10....pnas.orgContrasting outcomes of inherited NOD2 loss-of-function variants on immunotherapy response in cancer 010
Reposted by Javier OliverNature Biotechnology @natbiotech.nature.com · 16/04/2025Virtual cells for predictive immunotherapy - @fertiglab.bsky.social @genomescience.bsky.social go.nature.com/4jfqM3Y 2246
Javier Oliver @javiom.bsky.social · 11/04/2025www.nature.com/articles/s41...nature.comAdiponectin to the rescue: extracorporeal photopheresis for managing immune checkpoint inhibitor-induced toxicities - Signal Transduction and Targeted TherapySignal Transduction and Targeted Therapy - Adiponectin to the rescue: extracorporeal photopheresis for managing immune checkpoint inhibitor-induced toxicities 021
Javier Oliver @javiom.bsky.social · 04/04/2025www.nature.com/articles/s41...nature.comThe complexity of tobacco smoke-induced mutagenesis in head and neck cancer - Nature GeneticsWhole-genome sequencing and mutational signature analysis of 265 head and neck cancer samples collected from eight different countries provide insight into the vital contribution of tobacco smoke in disease etiology. 040
Javier Oliver @javiom.bsky.social · 04/04/2025insight.jci.org/articles/vie...insight.jci.org JCI Insight - Quantitative hypermorphic FAM111A alleles cause autosomal recessive Kenny-Caffey syndrome type 2 and osteocraniostenosis 000
Reposted by Javier OliverKeith Hornberger @krhornberger.bsky.social · 27/01/2025The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cellscell.comThe efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cellsProteolysis targeting chimeras (PROTACs) enable degradation of proteins involved in cancer growth. The efficacy of PROTACs depends on cellular factors that may enable or prevent target degradation. Wo... 0107
Javier Oliver @javiom.bsky.social · 10/01/2025journals.plos.org/plosone/arti...journals.plos.orgA genomics learning framework for undergraduatesGenomics is an increasingly important part of biology research. However, educating undergraduates in genomics is not yet a standard part of life sciences curricula. We believe this is, in part, due to... 010
Javier Oliver @javiom.bsky.social · 10/01/2025www.nature.com/articles/s42...nature.comThe genomic architecture of circulating cytokine levels points to drug targets for immune-related diseases - Communications BiologyThe study uses GWAS for 40 circulating cytokines in meta-analyses of 74,783 individuals. With Mendelian randomization, key cytokines like G-CSF/CSF-3 and CXCL9/MIG are identified as potential causal m... 010
Javier Oliver @javiom.bsky.social · 10/01/2025www.nature.com/articles/s41...nature.comDeep profiling of gene expression across 18 human cancers - Nature Biomedical EngineeringUsing unsupervised deep learning to generate low-dimensional latent spaces for gene-expression data can unveil biological insight across cancers. 000
Reposted by Javier OliverGabrielle Brewer @gabriellebrewer.bsky.social · 06/01/2025It's craaazy that chemo has been in the clinic for so long, yet its therapeutic index remains incompletely understood. In this #Perspective, Letai & de The explore existing models + knowledge gaps, & suggest principles for optimizing dosing + scheduling. @natrevcancer.bsky.social bit.ly/3C53w8gbit.lyConventional chemotherapy: millions of cures, unresolved therapeutic index - Nature Reviews CancerConventional chemotherapy has successfully cured millions of patients with cancer, yet the mechanisms of action for this remain unclear. In this Perspective, Letai and de The assess the existing mecha... 0339
Reposted by Javier OliverItai Yanai @itaiyanai.bsky.social · 14/12/2024This year, the term “scientist” turns 190 years old! It was coined by William Whewell, who also considered the alternatives: “savant”, “philosopher”, “nature-poker”, and “nature-peeper” Did he choose the right one? 54110
Reposted by Javier OliverEric Topol @erictopol.bsky.social · 12/12/2024A concise, insightful review of liquid biopsies for cancer www.cell.com/cancer-cell/... 26211
Reposted by Javier OliverJetty Raventós @jettyraventos.bsky.social · 20/11/2024New principles for international genomic collaborations No more helicopter research, no more using and extracting resources without recognition to the local researchers and communities www.who.int/news/item/20...who.intWHO releases new principles for ethical human genomic data collection and sharingThe World Health Organization (WHO) has issued a set of principles for the ethical collection, access, use and sharing of human genomic data. Created with guidance from the WHO Technical Advisory Grou... 003
Javier Oliver @javiom.bsky.social · 28/11/2024www.nature.com/articles/s41...nature.comFive latent factors underlie response to immunotherapy - Nature GeneticsAnalysis of human tumor datasets shows that all features that appear significantly associated with immunotherapy response and survival may be collapsed into five latent factors: tumor mutation burden,... 0103
Javier Oliver @javiom.bsky.social · 28/11/2024www.nature.com/articles/s41...nature.comCancer cells impair monocyte-mediated T cell stimulation to evade immunity - NatureInflammatory monocytes are identified as important players in T cell restimulation in the tumour microenvironment. 000
Reposted by Javier OliverAnna Obenauf @obenaufa.bsky.social · 27/11/2024Our Paper out in @natureportfolio.bsky.social with correct link www.nature.com/articles/s41...nature.comCancer cells impair monocyte-mediated T cell stimulation to evade immunity - NatureInflammatory monocytes are identified as important players in T cell restimulation in the tumour microenvironment. 1211821
Reposted by Javier OliverPadmanee (Pam) Sharma, MD, PhD @pamsharmamdphd.bsky.social · 25/11/2024www.nature.com/articles/s41... Sharing our latest review article to highlight the importance of appropriately developing combination strategies for immune checkpoint therapy. Grateful for working with 3 brilliant scientists: Sangeeta Goswami, Kristen Pauken & Linghua Wangnature.comNext-generation combination approaches for immune checkpoint therapy - Nature ImmunologyIn this Review, Sharma and colleagues describe the current landscape of combination therapies and discuss requirements for the development of effective combination strategies. 17827
Javier Oliver @javiom.bsky.social · 25/11/2024www.cell.com/cancer-cell/...cell.comThe hallmarks of cancer immune evasionCancer cells often evade the host immune system, challenging the effectiveness of immunotherapy. In this comprehensive review, Galassi et al. summarize key mechanisms of immune evasion within the “thr... 020
Javier Oliver @javiom.bsky.social · 21/11/2024www.nature.com/articles/s41...nature.comThe interplay of mutagenesis and ecDNA shapes urothelial cancer evolution - NatureWhole-genome sequencing of matched serial tumours from patients identifies two key mutagenic factors (APOBEC3 and chemotherapy) and extrachromosomal DNA-forming structural variants that driv... 010
Reposted by Javier OliverItai Yanai @itaiyanai.bsky.social · 20/11/2024Out today in Nature: "The Human Cell Atlas"! In my News and Views, I compare the cell atlas to early naturalists creating an atlas of South America. Researchers mining this cell atlas can now make big discoveries, just as the next naturalists then discovered evolution. www.nature.com/articles/d41... 321662
Reposted by Javier OliverInigo Martincorena @imartincorena.bsky.social · 20/11/2024Resharing here a recent X post. In this preprint, we introduce an improved version of NanoSeq, a duplex sequencing protocol with <5 errors per billion bp in single DNA molecules, and use it to study the somatic mutation landscape of oral epithelium in >1000 people. 1/ www.medrxiv.org/content/10.1...medrxiv.orgSomatic mutation and selection at epidemiological scaleAs we age, many tissues become colonised by microscopic clones carrying somatic driver mutations ([1][1]–[10][2]. Some of these clones represent a first step towards cancer whereas others may contribu... 28838
Javier Oliver @javiom.bsky.social · 19/11/2024www.nature.com/articles/s41...nature.comOrigins and impact of extrachromosomal DNA - NatureA study examines the diversity of extrachromosomal DNA elements in cancer, and provides details on the frequency and origin of extrachromosomal DNA and its role in the development of different types o... 084
Reposted by Javier OliverJohanna Joyce @johannajoyce.bsky.social · 14/11/2024Inspired by the other amazing starter packs - here's one for cancer researchers! I tried to make this broad - from immunology to genomics to cell biology and so much more.. This list also includes organizations & institutes supporting cancer researchers 🧪🔬⚕️🩺 Hope its useful! go.bsky.app/FEoaJMc 99361127
Reposted by Javier OliverStephen Turner @stephenturner.us · 15/11/2024A thread with some new starter packs in genomics and bioinformatics 🧵 1/13... 812455
Javier Oliver @javiom.bsky.social · 15/11/2024ascopubs.org/doi/10.1200/...ascopubs.orgUnderstanding the Biology and Testing Techniques for Pharmacogenomics in Oncology: A Practical Guide for the Clinician | JCO Oncology PracticePharmacogenomic (PGx) testing is a growing area of personalized medicine with demonstrated clinical utility in improving patient outcomes in oncology. PGx testing of pharmacogenes affecting drug pharm... 000