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Honglue

@honglue.bsky.social
53 followers 15 following 6 posts

NIH/NIGMS K99 fellow in the lab of @doudna-lab.bsky.social at UC Berkeley Previously JCC fellow in the Doudna lab and a PhD student in the Al-Hashimi lab

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Reposted by Honglue
Doudna Lab @doudna-lab.bsky.social · 06/08/2026
The latest work from the lab now out in @cp-molcell.bsky.social! New mechanistic insights into TnpB DNA unwinding and hypercompact plant genome editors🌱 Congratulations to leads @zehanzhou.bsky.social, Iren Saffarian, @honglue.bsky.social, Trevor Weiss & team, and Jacobsen, Savage and Bryant labs
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Reposted by Honglue
Doudna Lab @doudna-lab.bsky.social · 27/01/2026
🚀 New preprint! @jacobsenucla.bsky.social x @doudna-lab.bsky.social collaboration: High-activity TnpB (Ymu1-WFR) + a multi-gRNA system in TRV enables heritable, tissue-culture-free multiplex editing in plants. Big potential for plant biotech 🧬🌾🌱 doi.org/10.64898/202...
doi.org
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Reposted by Honglue
Doudna Lab @doudna-lab.bsky.social · 10/01/2026
New preprint 👉Doudna x Bryant x Jacobsen x Savage collaboration! Work led by @zehanzhou.bsky.social, I. Saffarian-Deemyad, @honglue.bsky.social, T. Weiss We dissect how stepwise DNA unwinding gates TnpB genome editing, revealing how unwound DNA states enhance cleavage www.biorxiv.org/content/10.6...
biorxiv.org
Stepwise DNA unwinding gates TnpB genome-editing activity
TnpB is a compact RNA-guided endonuclease and evolutionary ancestor of CRISPR-Cas12 that offers a promising platform for genome engineering. However, the genome-editing activity of TnpBs remains limit...
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Reposted by Honglue
Zehan Zhou @zehanzhou.bsky.social · 15/01/2026
How do the ancestors of CRISPR-Cas unwind DNA and how can this lead to better genome editing? With our collaboration between @doudna-lab.bsky.social x @jacobsenucla.bsky.social x Zev Bryant's lab x @savagecatsonly.bsky.social we've uncovered the secrets behind TnpB's dynamics!
biorxiv.org
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Honglue @honglue.bsky.social · 18/09/2025
The plasmids associated with this paper are available on addgene now! www.addgene.org/browse/artic...
addgene.org
Addgene: Rapid two-step target capture ensures efficient CRISPR-Cas9-guided genome editing.
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Honglue @honglue.bsky.social · 24/06/2025
Welcome to the JCC family!
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Honglue @honglue.bsky.social · 05/05/2025
Our paper is finally out in Molecular Cell! 🚀 We uncover why PAM-relaxed Cas9 variants like SpRY are inefficient — they get kinetically trapped during target engagement. Mechanistic insights like this are key to engineering smarter, faster genome editors. Huge thanks to the team! #CRISPR #editing🔬🧬
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Reposted by Honglue
Doudna Lab @doudna-lab.bsky.social · 23/04/2025
Now online at Molecular Cell! What makes SpyCas9 such an efficient editor? Read more at: www.cell.com/molecular-ce... Congrats @honglue.bsky.social, Noor Al-Sayyad, and @kevinwasko.bsky.social!
cell.com
Rapid two-step target capture ensures efficient CRISPR-Cas9-guided genome editing
A two-step target capture process—specific but low-affinity PAM binding followed by rapid DNA unwinding—underpins efficient CRISPR-Cas9 editing. Shi et al. show that PAM-relaxed Cas9 variants like SpR...
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Reposted by Honglue
Innovative Genomics Institute @innovativegenomics.bsky.social · 23/04/2025
“What we’ve done here is uncover the secret sauce that makes typical #Cas9 — the original Nobel molecule — so efficient and precise." – Co-first author @honglue.bsky.social of the @doudna-lab.bsky.social on his new paper out today in Molecular Cell Read here: shorturl.at/p664D
Pictured: Kevin Wasko (left) and Honglue Shi in front of their gel imager, confirming that the SpRY Cas9 variant struggles to effectively open DNA
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Honglue @honglue.bsky.social · 03/04/2025
See details in this website gess.hms.harvard.edu/event/meirui...
gess.hms.harvard.edu
Meirui An and Honglue Shi | Genome Engineering Seminar Series @HMS
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Reposted by Honglue
Ben Adler @benadler.bsky.social · 31/03/2025
🧪🧪🧪10 incredible findings about Cas10-relative, mCpol: result number 10 will surprise you!🧪🧪🧪 @erinedoherty.bsky.social and I teamed up to understand the role and function of Cas10-relative, mCpol, and its role in antiphage immunity. For more, check out Erin's thread 👇
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Doudna Lab @doudna-lab.bsky.social · 03/04/2025
Catch @honglue.bsky.social at the Harvard Genome Engineering Seminar Series this Monday, April 7 at 1pm EST / 10am PST! If you’ve ever wondered why SpyCas9 is so efficient at genome editing, don’t miss his talk—Zoom link: harvard.zoom.us/j/94394339529
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Honglue @honglue.bsky.social · 03/04/2025
Giving a seminar for the Genome Engineering Seminar Series at Harvard this Monday, April 7 at 1pm EST / 10am PST! 🎙️ I’ll be talking about our Cas9 work—if you’ve ever wondered what the recipe is for high-efficiency CRISPR genome editing, come hang out!🧬💥 📍 Zoom link: harvard.zoom.us/j/94394339529
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Reposted by Honglue
Erin Doherty @erinedoherty.bsky.social · 31/03/2025
Preprint alert! ✨ In this project that I co-led with @benadler.bsky.social, we show that a miniature CRISPR-Cas10-like enzyme, mCpol, uses a novel inverse signaling mechanism to prevent the spread of viruses that attempt immune evasion by depleting host cyclic nucleotides. Check it out:
biorxiv.org
A miniature CRISPR-Cas10 enzyme confers immunity by an inverse signaling pathway
Microbial and viral co-evolution has created immunity mechanisms involving oligonucleotide signaling that share mechanistic features with human anti-viral systems. In these pathways, including CBASS a...
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Reposted by Honglue
Innovative Genomics Institute @innovativegenomics.bsky.social · 08/03/2025
Thanks to out @ucberkeleyofficial.bsky.social community for joining us at Stand Up For Science! @jenniferdoudna.bsky.social spoke about how NIH funding supported her PhD & NSF funding supported her development of #CRISPR genome editing. Federal funding is needed for life-saving science!
Jennifer Doudna speaking at Stand Up for Science in Berkeleycrowd at Stand Up for Science in Berkeleycrowd at Stand Up for Science in Berkeleycrowd at Stand Up for Science in Berkeley
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