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Erin Doherty

@erinedoherty.bsky.social
555 followers 524 following 57 posts

Postdoc @ Doudna Lab, UC Berkeley 🧬 | Chemical & Structural Biology | Immunity Mechanisms | CRISPR | RNA-Editing | F32 NRSA | Berkeley Chancellor's Fellow UC Davis Beal Lab Alum | Former CIRM, NIH F31 & NIH T32

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Reposted by Erin Doherty
Kranzusch Lab @kranzuschlab.bsky.social · 02/09/2026
Discovery of chimeric RNAs and thousands of new proteins in mammalian cells – including a new regulator of inflammasome signaling! www.nature.com/articles/s41... www.jacksonimmunology.com
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Erin Doherty @erinedoherty.bsky.social · 31/08/2026
I'm very excited to share that this January, I’ll be joining Columbia University’s Department of Biological Sciences as a tenure-track Assistant Professor 🏙️🦁🍎 @columbiauniversity.bsky.social 🧬 Learn more: dohertylab.org Thank you to all those who supported me along the way!
dohertylab.org
Doherty lab at Columbia University | immune signaling | Sherman Fairchild Center, 1212 Amsterdam Ave, New York, NY 10027, USA
We treat viral antagonism as a discovery tool for host biology to reveal fundamental mechanisms of immune signaling and new opportunities for therapeutic intervention.
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Erin Doherty @erinedoherty.bsky.social · 22/07/2026
It was a privilege to lead the biochemistry efforts for the first preprint from the Nomburg lab! Check this exploration of conserved protein folds adapted to suppress immunity. www.biorxiv.org/content/10.6...
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Jason Nomburg @jnoms.bsky.social · 22/07/2026
Happy to share the first preprint out of the Nomburg lab! Many aspects of cellular immunity are shared across the tree of life. Here, we show that some of these conserved aspects of cellular immunity are mirrored by conserved effectors of immune antagonism. Thread below! 1/15
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Doudna Lab @doudna-lab.bsky.social · 12/05/2026
New pre-print 📣 “Undruggable” cancer mutations remain very hard to target with current modalities. What if we could instead sense mutant transcripts and convert that recognition into selective cell killing? Check out this work led by postdoc Jingkun Zeng: www.biorxiv.org/content/10.6...
biorxiv.org
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Jonathan Pruneda @jnpruneda.bsky.social · 04/05/2026
Interested in microbiology, immunology, and host-pathogen interactions? Come work with us! Our department at OHSU is opening a search for a new tenure-track faculty position. See the job advertisement for details. Please share within your networks! www.nature.com/naturecareer...
nature.com
Faculty Position in Molecular Microbiology and Immunology - Portland, Oregon job with Oregon Health & Science University (OHSU) - Molecular Microbiology and Immunology | 12858852
The Department of Molecular Microbiology and Immunology at OHSU invites applications for a tenure-track Assistant or Associate Professor position.
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Reposted by Erin Doherty
Cress Lab @cresslab.bsky.social · 30/04/2026
Our lab is proud to present our latest work harnessing Bridge Recombinase for genome-scale editing in diverse bacteria, microbiome editing, and programmable horizontal gene transfer.
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Doudna Lab @doudna-lab.bsky.social · 27/04/2026
We present VIPR, a phage-encoded RNA-guided system that recognizes DNA with a noncontiguous code unlike CRISPR. Tiny, programmable, possibly ancestral to CRISPR immunity; VIPR is built around a striking RNA-DNA-DNA triplex.
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Erin Doherty @erinedoherty.bsky.social · 27/04/2026
Amazing work from my talented lab-mates. Check out this phage-encoded RNA-guided system that recognizes DNA with a noncontiguous code unlike CRISPR.
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Reposted by Erin Doherty
Sorek Lab @soreklab.bsky.social · 05/03/2026
Out today: We discovered new viral proteins that target immune signaling molecules, solely based on their AlphaFold-predicted shapes www.science.org/doi/10.1126/... Congrats Nitzan Tal and coauthors! Thank you Kranzusch lab for the fun collaboration! Linking below previous thread on our findings
science.org
Structural modeling reveals phage proteins that manipulate bacterial immune signaling
Immune systems in animals, plants, and bacteria often rely on intracellular nucleotide signaling, which viruses can block by sequestering or degrading these signals. We identified structural and bioph...
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Malcolm White @mfwhite2.bsky.social · 16/03/2026
New preprint: Cyclic tri-adenylate signalling by a Panoptes anti-phage guard system with a CARF-TM effector. Great work led by Sabine Grüschow www.biorxiv.org/content/10.6...
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Patrick R. Secor @prsecor.bsky.social · 28/01/2026
Friends, please help spread the word about our microbiology REU program at Montana State University. www.montana.edu/mbi/reu/ Each student receives a stipend ($7000 for 10 wks). Travel compensation, room, and board are also provided. Details in the attached pic--Feb 14 deadline 🧫🧪🦠#microsky
This Research Experiences for Undergraduates (REU) program is funded by the National Science Foundation to create "points of entry" for students interested in research. Students apply from across the country to spend 10 weeks in Bozeman, Montana this summer (May 26, 2026 - August 1, 2026). Admitted students are paired with a faculty mentor, who serves as an advisor for a student's summer project. Each student receives a stipend ($7000 for 10 wks). Travel compensation, room, and board are also provided.

Our program leverages MSU’s unique microbiology expertise, focusing specifically on microbes living with little or no oxygen (like those in the hot springs of nearby Yellowstone). Low oxygen microbes are essential to human and ecosystem health. They influence (or control) such processes as the breakdown of food in the GI tract, removal of toxins from our bodies and the environment, and production of greenhouse gases. They are also models for understanding the origins of life on this planet, and the potential for life on other planets.

A key goal of our program is to recruit students from schools with limited research infrastructure. Being in Montana, a state with a vibrant Native American community, we are particularly interested in applications from students at tribal colleges. However, ANYONE with an interest in microbiology - or biology/science in general - can and should apply.

If willing and able, please share/tweet/spread the word far and wide. Applications are due February 14, 2026. Full details can be found through our website http://www.montana.edu/mbi/reu/
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Katie Langin @klangin.bsky.social · 22/01/2026
"What we’re … seeing is the toll of the uncertainty." My latest story for @science.org—part of a package that explores how the U.S. scientific community has changed under Trump—includes new numbers on graduate enrollment and faculty hiring. www.science.org/content/arti...
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Sam Hobbs @hobbslabutah.bsky.social · 22/01/2026
Hello world! I am excited to announce my lab is open at the University of Utah in the Department of Biochemistry. We are looking for scientists at all levels interested in studying host-virus interactions in both bacteria and animals. Come join us in beautiful Utah! (photo is 10 steps from lab)
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Zehan Zhou @zehanzhou.bsky.social · 15/01/2026
How do the ancestors of CRISPR-Cas unwind DNA and how can this lead to better genome editing? With our collaboration between @doudna-lab.bsky.social x @jacobsenucla.bsky.social x Zev Bryant's lab x @savagecatsonly.bsky.social we've uncovered the secrets behind TnpB's dynamics!
biorxiv.org
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Doudna Lab @doudna-lab.bsky.social · 10/01/2026
New preprint 👉Doudna x Bryant x Jacobsen x Savage collaboration! Work led by @zehanzhou.bsky.social, I. Saffarian-Deemyad, @honglue.bsky.social, T. Weiss We dissect how stepwise DNA unwinding gates TnpB genome editing, revealing how unwound DNA states enhance cleavage www.biorxiv.org/content/10.6...
biorxiv.org
Stepwise DNA unwinding gates TnpB genome-editing activity
TnpB is a compact RNA-guided endonuclease and evolutionary ancestor of CRISPR-Cas12 that offers a promising platform for genome engineering. However, the genome-editing activity of TnpBs remains limit...
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 23/12/2025
OSTP has issued a request for information, please share with them your ideas for how to improve government functions related to science funding and policy www.federalregister.gov/documents/20...
federalregister.gov
Notice of Request for Information; Accelerating the American Scientific Enterprise
The Office of Science and Technology Policy (OSTP) requests input from all interested parties on Federal policy updates that aim to accelerate the American scientific enterprise, enable groundbreaking...
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Cell Host & Microbe @cp-cellhostmicrobe.bsky.social · 17/12/2025
Divergent viral phosphodiesterases for immune signaling evasion Structure-based searches reveal exceptional diversity among viral 2H phosphodiesterases across the virome that evade immunity by degrading oligonucleotides www.cell.com/cell-host-mi...
cell.com
Divergent viral phosphodiesterases for immune signaling evasion
Oligonucleotides play fundamental roles in immune system activation across the tree of life. Viral proteins, 2H phosphodiesterases (PDEs), evade immunity by degrading these signals. Doherty and Nombur...
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Cell Host & Microbe @cp-cellhostmicrobe.bsky.social · 17/12/2025
Viral enzymes degrade to evade Preview of work identifying & characterizing diverse families of viral two-histidine phosphodiesterase enzymes that degrade nucleotide-based signaling molecules, each with distinct substrate specificities. www.cell.com/cell-host-mi...
cell.com
Viral enzymes degrade to evade
Across all domains of life, immune systems rely on nucleotide-based signaling molecules to activate defense responses. In a recent Cell Host & Microbe study, Doherty, Nomburg, and colleagues identify ...
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Organic Division of the ACS @organicdivision.org · 11/12/2025
Round 1 of the 2025 Organic Reaction Championship ends today at midnight! Will the Diels–Alder Reaction maintain its legacy dominance? Can the Grignard Reaction overcome its temperament? Vote for your favorite reaction! #ACSOrganic #amplifyorganic zurl.co/DTEvX
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Erin Doherty @erinedoherty.bsky.social · 10/12/2025
A very nice Preview of our work in @cp-cellhostmicrobe.bsky.social this morning from Chrishan Fernando & Nicole D. Marino! www.cell.com/cell-host-mi...
cell.com
Viral enzymes degrade to evade
Across all domains of life, immune systems rely on nucleotide-based signaling molecules to activate defense responses. In a recent Cell Host & Microbe study, Doherty, Nomburg, and colleagues identify ...
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Reposted by Erin Doherty
Doudna Lab @doudna-lab.bsky.social · 09/12/2025
✨New preprint! 🧵1/4 Excited to share our work on AI-guided design of minimal RNA-guided nucleases. Amazing work by @petrskopintsev.bsky.social @isabelesain.bsky.social @evandeturk.bsky.social et al! Multi-lab collaboration @banfieldlab.bsky.social @jhdcate.bsky.social @jacobsenucla.bsky.social🧬 🔗👇
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Jeremy Berg @jeremymberg.bsky.social · 08/12/2025
Excellent story from @aniloza.bsky.social and colleague at STAT on the MOSAIC program. www.statnews.com/2025/12/08/t... 1/4
statnews.com
NIH shut out hundreds of young scientists from funding to start their own labs
Special Report: The NIH has shut out hundreds of young scientists from funding to start their own labs.
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Aaron and the Hoskins Lab at UW Madison @uwmadisonrna.bsky.social · 05/12/2025
This is a neat paper. Especially liked the use of fluoro nucleotides. The specificity and structure of DNA cross-linking by the gut bacterial genotoxin colibactin | Science www.science.org/doi/10.1126/...
science.org
The specificity and structure of DNA cross-linking by the gut bacterial genotoxin colibactin
Accumulating evidence has connected the chemically unstable, DNA-damaging gut bacterial natural product colibactin to colorectal cancer, including the identification of mutational signatures that are ...
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Reposted by Erin Doherty
Erez Yirmiya @erezyirmiya.bsky.social · 04/12/2025
I’m happy to share our new preprint! We uncovered the full diversity of bacterial TIR-based antiviral immune signaling, massively expanded the known diversity of Thoeris systems, and revealed conservation of TIR-derived immune signals across the tree of life. www.biorxiv.org/content/10.6...
biorxiv.org
Systematic discovery of TIR-based immune signaling systems in bacteria
Toll/interleukin-1 receptor (TIR) domains are important for immune signaling across humans, plants and bacteria. These domains were recently found to produce immune signaling molecules in plant immuni...
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Shira Weingarten-Gabbay @shiraweingarten.bsky.social · 04/12/2025
Tomorrow (Thursday) at the Systems Virology Journal Club, Noor Youssef will present her work with Debbie Marks on developing an AI model that predicts how viruses evolve to evade the immune response. Paper: pubmed.ncbi.nlm.nih.gov/40345199/
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Waggoner Lab @labwaggoner.bsky.social · 03/12/2025
ADAR1 editing is necessary for only a small subset of cytosolic dsRNAs to evade MDA5-mediated autoimmunity @natgenet.nature.com @stanforduniversity.bsky.social www.nature.com/articles/s41...
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Jack Bravo @jpkbravo.bsky.social · 02/12/2025
📢 We have multiple open PhD positions to study bacterial immune systems using cutting-edge cryo-EM, microbiology, and biochemistry in our group! Join us and uncover how bacterial defenses eliminate predators and engineer next-gen biotech tools. 🔥 Apply by Jan 8, 2026 Details: phd.pages.ista.ac.at
phd.pages.ista.ac.at
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Bel Esain @isabelesain.bsky.social · 26/11/2025
Super cool work by @erinedoherty.bsky.social and @jnoms.bsky.social ! 💪🏼 Viruses hack bacterial immunity by breaking down the nucleotide signals that trigger defence 🦠🧬
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Innovative Genomics Institute @innovativegenomics.bsky.social · 25/11/2025
1/2 New from co-first authors @erinedoherty.bsky.social and @jnoms.bsky.social of the @doudna-lab.bsky.social — Bacteria fight off viruses using tiny molecular “alarm signals” made of nucleotides. To survive, viruses must find ways to shut these signals down.
innovativegenomics.org
New Method Uncovers How Viruses Evade Immune Responses — and How We Might Fight Back
Explore how viruses evade immune responses by developing enzymes that disrupt molecular alarm signals in host cells.
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Jason Nomburg @jnoms.bsky.social · 25/11/2025
So happy to see this work out! Was such a pleasure to co-lead this effort with Erin. Do you like viral immune evasion, and using protein structure to study immune antagonists? Give it a read!
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Erin Doherty @erinedoherty.bsky.social · 25/11/2025
Work I co-led with @jnoms.bsky.social is now online at @cp-cellhostmicrobe.bsky.social ! We revealed a previously unrealized diversity of viral immune-evasion proteins that selectively destroy different cyclic nucleotide signals used in bacterial immunity. www.sciencedirect.com/science/arti...
sciencedirect.com
Divergent viral phosphodiesterases for immune signaling evasion
Cyclic dinucleotides (CDNs) and other short oligonucleotides play fundamental roles in immune system activation in organisms ranging from bacteria to …
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Erin Doherty @erinedoherty.bsky.social · 23/11/2025
Such a privilege to see my summer mentee present her work at #ABRCMS2025!
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Erin Doherty @erinedoherty.bsky.social · 05/11/2025
This whole thread.
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Sarah T Roberts, PhD @ubiquity75.xyz · 02/11/2025
The President’s Postdoctoral Fellowship Program, PPFP, has been a jewel in the crown for faculty development and recruitment at the University of California for years and the results have been an expanded faculty with almost 100% tenure rates — unprecedented success.
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Jason Nomburg @jnoms.bsky.social · 17/10/2025
Highly recommend this position for anyone looking for a technician job! Erin is a wonderful mentor to junior scientists, and her work is awesome!
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Erin Doherty @erinedoherty.bsky.social · 17/10/2025
I'm hiring a lab technician to help me explore some exciting new questions about virus-host interactions! Biochemistry and/or mammalian cell culture experience is desired.
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Ashley Sullivan @aesully98.bsky.social · 03/10/2025
A little late to the Panoptes party, but I’m delighted to share that our paper is published! 👁️ www.nature.com/articles/s41...
nature.com
The Panoptes system uses decoy cyclic nucleotides to defend against phage - Nature
The Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy of sensing immune evasion through second-messenger surveillance.
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Malcolm White @mfwhite2.bsky.social · 02/10/2025
My pleasure @erinedoherty.bsky.social and @benmorehouse.bsky.social - for me this was the stand-out discovery of the last year in the field
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Doudna Lab @doudna-lab.bsky.social · 02/10/2025
New paper online at @nature.com from co-leads @erinedoherty.bsky.social + @benadler.bsky.social !
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Ben Morehouse @benmorehouse.bsky.social · 01/10/2025
Our story describing the Panoptes bacterial immune defense system is now finally peer-reviewed and published today! www.nature.com/articles/s41...
nature.com
The Panoptes system uses decoy cyclic nucleotides to defend against phage - Nature
The Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy of sensing immune evasion through second-messenger surveillance.
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Erin Doherty @erinedoherty.bsky.social · 02/10/2025
Now online at @nature.com we show how the Panoptes defense system protects against viruses that attempt immune evasion - and expands our understanding of the role of oligonucleotides in immunity. Check out this work co-led with @benadler.bsky.social here: www.nature.com/articles/s41...
nature.com
A miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling - Nature
Panoptes, an anti-phage defence system against virus-mediated immune suppression, is revealed.
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Waggoner Lab @labwaggoner.bsky.social · 01/10/2025
Bacteria use a decoy defense molecule to set a trap for viruses @doudna-lab.bsky.social @ucberkeleyofficial.bsky.social @ucirvine.bsky.social @aaronwhiteley.bsky.social @colorado.edu @aesully98.bsky.social www.nature.com/articles/d41... www.nature.com/articles/s41... www.nature.com/articles/s41...
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Ben Adler @benadler.bsky.social · 01/10/2025
Thank you to everyone who helped make this story happen! Obligatory meme to summarize: “How I imagine phage facing CBASS and mCpol”
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Innovative Genomics Institute @innovativegenomics.bsky.social · 01/10/2025
Out today in @nature.com, a new paper from @doudna-lab.bsky.social lab, co-first authors @erinedoherty.bsky.social + @benadler.bsky.social and collaborators at @ucsandiego.bsky.social unveils a powerful new defense strategy in the arms war between viruses + microbes. Read here: ow.ly/mPQI50X5g68
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Vivek Mutalik @vivekmutalik.bsky.social · 01/10/2025
Super cool paper by @benadler.bsky.social @erinedoherty.bsky.social #phage #phagesky
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Jason Nomburg @jnoms.bsky.social · 01/10/2025
Huge congrats for such an amazing story, @benadler.bsky.social and @erinedoherty.bsky.social!!
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Ben Adler @benadler.bsky.social · 01/10/2025
Today in @nature.com , we highlight how a cousin of CRISPR-Cas10, mCpol, establishes an evolutionary trap in anti-phage immune systems. Check out @erinedoherty.bsky.social and my work from @doudna-lab.bsky.social lab here: www.nature.com/articles/s41...
nature.com
A miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling - Nature
Panoptes, an anti-phage defence system against virus-mediated immune suppression, is revealed.
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Doudna Lab @doudna-lab.bsky.social · 30/09/2025
Congrats to Doudna lab postdoc @erinedoherty.bsky.social! 🎊
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AAUP @aaup.org · 12/09/2025
The AAUP stands in full solidarity w/HBCU faculty, staff, students, admin, & alumni. We call on law enforcement & governmental authorities to treat these threats w/ the seriousness they deserve, investigate thoroughly, hold responsible parties accountable, & strengthen preventive measures on campus.
aaup.org
AAUP Condemns Terrorist Threats to HBCUs
The AAUP condemns unequivocally the recent and recurring bomb and terroristic threats against multiple HBCUs. Threats targeting HBCUs are attacks not only on individuals but on the legacy of resilienc...
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