Reposted by Erin DohertyKranzusch Lab @kranzuschlab.bsky.social · 02/09/2026Discovery of chimeric RNAs and thousands of new proteins in mammalian cells – including a new regulator of inflammasome signaling! www.nature.com/articles/s41... www.jacksonimmunology.com 03611
Erin Doherty @erinedoherty.bsky.social · 31/08/2026I'm very excited to share that this January, I’ll be joining Columbia University’s Department of Biological Sciences as a tenure-track Assistant Professor 🏙️🦁🍎 @columbiauniversity.bsky.social 🧬 Learn more: dohertylab.org Thank you to all those who supported me along the way!dohertylab.orgDoherty lab at Columbia University | immune signaling | Sherman Fairchild Center, 1212 Amsterdam Ave, New York, NY 10027, USAWe treat viral antagonism as a discovery tool for host biology to reveal fundamental mechanisms of immune signaling and new opportunities for therapeutic intervention. 26312
Erin Doherty @erinedoherty.bsky.social · 22/07/2026It was a privilege to lead the biochemistry efforts for the first preprint from the Nomburg lab! Check this exploration of conserved protein folds adapted to suppress immunity. www.biorxiv.org/content/10.6... 2101
Reposted by Erin DohertyJason Nomburg @jnoms.bsky.social · 22/07/2026Happy to share the first preprint out of the Nomburg lab! Many aspects of cellular immunity are shared across the tree of life. Here, we show that some of these conserved aspects of cellular immunity are mirrored by conserved effectors of immune antagonism. Thread below! 1/15 38249
Reposted by Erin DohertyDoudna Lab @doudna-lab.bsky.social · 12/05/2026New pre-print 📣 “Undruggable” cancer mutations remain very hard to target with current modalities. What if we could instead sense mutant transcripts and convert that recognition into selective cell killing? Check out this work led by postdoc Jingkun Zeng: www.biorxiv.org/content/10.6...biorxiv.org 14117
Reposted by Erin DohertyJonathan Pruneda @jnpruneda.bsky.social · 04/05/2026Interested in microbiology, immunology, and host-pathogen interactions? Come work with us! Our department at OHSU is opening a search for a new tenure-track faculty position. See the job advertisement for details. Please share within your networks! www.nature.com/naturecareer...nature.comFaculty Position in Molecular Microbiology and Immunology - Portland, Oregon job with Oregon Health & Science University (OHSU) - Molecular Microbiology and Immunology | 12858852The Department of Molecular Microbiology and Immunology at OHSU invites applications for a tenure-track Assistant or Associate Professor position. 03336
Reposted by Erin DohertyCress Lab @cresslab.bsky.social · 30/04/2026Our lab is proud to present our latest work harnessing Bridge Recombinase for genome-scale editing in diverse bacteria, microbiome editing, and programmable horizontal gene transfer. 69851
Reposted by Erin DohertyDoudna Lab @doudna-lab.bsky.social · 27/04/2026We present VIPR, a phage-encoded RNA-guided system that recognizes DNA with a noncontiguous code unlike CRISPR. Tiny, programmable, possibly ancestral to CRISPR immunity; VIPR is built around a striking RNA-DNA-DNA triplex. 116050
Erin Doherty @erinedoherty.bsky.social · 27/04/2026Amazing work from my talented lab-mates. Check out this phage-encoded RNA-guided system that recognizes DNA with a noncontiguous code unlike CRISPR. 090
Reposted by Erin DohertySorek Lab @soreklab.bsky.social · 05/03/2026Out today: We discovered new viral proteins that target immune signaling molecules, solely based on their AlphaFold-predicted shapes www.science.org/doi/10.1126/... Congrats Nitzan Tal and coauthors! Thank you Kranzusch lab for the fun collaboration! Linking below previous thread on our findingsscience.orgStructural modeling reveals phage proteins that manipulate bacterial immune signalingImmune systems in animals, plants, and bacteria often rely on intracellular nucleotide signaling, which viruses can block by sequestering or degrading these signals. We identified structural and bioph... 010852
Reposted by Erin DohertyMalcolm White @mfwhite2.bsky.social · 16/03/2026New preprint: Cyclic tri-adenylate signalling by a Panoptes anti-phage guard system with a CARF-TM effector. Great work led by Sabine Grüschow www.biorxiv.org/content/10.6... 04523
Reposted by Erin DohertyPatrick R. Secor @prsecor.bsky.social · 28/01/2026Friends, please help spread the word about our microbiology REU program at Montana State University. www.montana.edu/mbi/reu/ Each student receives a stipend ($7000 for 10 wks). Travel compensation, room, and board are also provided. Details in the attached pic--Feb 14 deadline 🧫🧪🦠#microsky 36182
Reposted by Erin DohertyKatie Langin @klangin.bsky.social · 22/01/2026"What we’re … seeing is the toll of the uncertainty." My latest story for @science.org—part of a package that explores how the U.S. scientific community has changed under Trump—includes new numbers on graduate enrollment and faculty hiring. www.science.org/content/arti... 23824
Reposted by Erin DohertySam Hobbs @hobbslabutah.bsky.social · 22/01/2026Hello world! I am excited to announce my lab is open at the University of Utah in the Department of Biochemistry. We are looking for scientists at all levels interested in studying host-virus interactions in both bacteria and animals. Come join us in beautiful Utah! (photo is 10 steps from lab) 67531
Reposted by Erin DohertyZehan Zhou @zehanzhou.bsky.social · 15/01/2026How do the ancestors of CRISPR-Cas unwind DNA and how can this lead to better genome editing? With our collaboration between @doudna-lab.bsky.social x @jacobsenucla.bsky.social x Zev Bryant's lab x @savagecatsonly.bsky.social we've uncovered the secrets behind TnpB's dynamics!biorxiv.org 1179
Reposted by Erin DohertyDoudna Lab @doudna-lab.bsky.social · 10/01/2026New preprint 👉Doudna x Bryant x Jacobsen x Savage collaboration! Work led by @zehanzhou.bsky.social, I. Saffarian-Deemyad, @honglue.bsky.social, T. Weiss We dissect how stepwise DNA unwinding gates TnpB genome editing, revealing how unwound DNA states enhance cleavage www.biorxiv.org/content/10.6...biorxiv.orgStepwise DNA unwinding gates TnpB genome-editing activityTnpB is a compact RNA-guided endonuclease and evolutionary ancestor of CRISPR-Cas12 that offers a promising platform for genome engineering. However, the genome-editing activity of TnpBs remains limit... 02611
Reposted by Erin DohertyCarolyn Bertozzi @carolynbertozzi.bskyverified.social · 23/12/2025OSTP has issued a request for information, please share with them your ideas for how to improve government functions related to science funding and policy www.federalregister.gov/documents/20...federalregister.govNotice of Request for Information; Accelerating the American Scientific EnterpriseThe Office of Science and Technology Policy (OSTP) requests input from all interested parties on Federal policy updates that aim to accelerate the American scientific enterprise, enable groundbreaking... 34246
Reposted by Erin DohertyCell Host & Microbe @cp-cellhostmicrobe.bsky.social · 17/12/2025Divergent viral phosphodiesterases for immune signaling evasion Structure-based searches reveal exceptional diversity among viral 2H phosphodiesterases across the virome that evade immunity by degrading oligonucleotides www.cell.com/cell-host-mi...cell.comDivergent viral phosphodiesterases for immune signaling evasionOligonucleotides play fundamental roles in immune system activation across the tree of life. Viral proteins, 2H phosphodiesterases (PDEs), evade immunity by degrading these signals. Doherty and Nombur... 092
Reposted by Erin DohertyCell Host & Microbe @cp-cellhostmicrobe.bsky.social · 17/12/2025Viral enzymes degrade to evade Preview of work identifying & characterizing diverse families of viral two-histidine phosphodiesterase enzymes that degrade nucleotide-based signaling molecules, each with distinct substrate specificities. www.cell.com/cell-host-mi...cell.comViral enzymes degrade to evadeAcross all domains of life, immune systems rely on nucleotide-based signaling molecules to activate defense responses. In a recent Cell Host & Microbe study, Doherty, Nomburg, and colleagues identify ... 052
Reposted by Erin DohertyOrganic Division of the ACS @organicdivision.org · 11/12/2025Round 1 of the 2025 Organic Reaction Championship ends today at midnight! Will the Diels–Alder Reaction maintain its legacy dominance? Can the Grignard Reaction overcome its temperament? Vote for your favorite reaction! #ACSOrganic #amplifyorganic zurl.co/DTEvX 066
Erin Doherty @erinedoherty.bsky.social · 10/12/2025A very nice Preview of our work in @cp-cellhostmicrobe.bsky.social this morning from Chrishan Fernando & Nicole D. Marino! www.cell.com/cell-host-mi...cell.comViral enzymes degrade to evadeAcross all domains of life, immune systems rely on nucleotide-based signaling molecules to activate defense responses. In a recent Cell Host & Microbe study, Doherty, Nomburg, and colleagues identify ... 02911
Reposted by Erin DohertyDoudna Lab @doudna-lab.bsky.social · 09/12/2025✨New preprint! 🧵1/4 Excited to share our work on AI-guided design of minimal RNA-guided nucleases. Amazing work by @petrskopintsev.bsky.social @isabelesain.bsky.social @evandeturk.bsky.social et al! Multi-lab collaboration @banfieldlab.bsky.social @jhdcate.bsky.social @jacobsenucla.bsky.social🧬 🔗👇 110248
Reposted by Erin DohertyJeremy Berg @jeremymberg.bsky.social · 08/12/2025Excellent story from @aniloza.bsky.social and colleague at STAT on the MOSAIC program. www.statnews.com/2025/12/08/t... 1/4statnews.comNIH shut out hundreds of young scientists from funding to start their own labsSpecial Report: The NIH has shut out hundreds of young scientists from funding to start their own labs. 24727
Reposted by Erin DohertyAaron and the Hoskins Lab at UW Madison @uwmadisonrna.bsky.social · 05/12/2025This is a neat paper. Especially liked the use of fluoro nucleotides. The specificity and structure of DNA cross-linking by the gut bacterial genotoxin colibactin | Science www.science.org/doi/10.1126/...science.orgThe specificity and structure of DNA cross-linking by the gut bacterial genotoxin colibactinAccumulating evidence has connected the chemically unstable, DNA-damaging gut bacterial natural product colibactin to colorectal cancer, including the identification of mutational signatures that are ... 011
Reposted by Erin DohertyErez Yirmiya @erezyirmiya.bsky.social · 04/12/2025I’m happy to share our new preprint! We uncovered the full diversity of bacterial TIR-based antiviral immune signaling, massively expanded the known diversity of Thoeris systems, and revealed conservation of TIR-derived immune signals across the tree of life. www.biorxiv.org/content/10.6...biorxiv.orgSystematic discovery of TIR-based immune signaling systems in bacteriaToll/interleukin-1 receptor (TIR) domains are important for immune signaling across humans, plants and bacteria. These domains were recently found to produce immune signaling molecules in plant immuni... 27429
Reposted by Erin DohertyShira Weingarten-Gabbay @shiraweingarten.bsky.social · 04/12/2025Tomorrow (Thursday) at the Systems Virology Journal Club, Noor Youssef will present her work with Debbie Marks on developing an AI model that predicts how viruses evolve to evade the immune response. Paper: pubmed.ncbi.nlm.nih.gov/40345199/ 053
Reposted by Erin DohertyWaggoner Lab @labwaggoner.bsky.social · 03/12/2025ADAR1 editing is necessary for only a small subset of cytosolic dsRNAs to evade MDA5-mediated autoimmunity @natgenet.nature.com @stanforduniversity.bsky.social www.nature.com/articles/s41... 0125
Reposted by Erin DohertyJack Bravo @jpkbravo.bsky.social · 02/12/2025📢 We have multiple open PhD positions to study bacterial immune systems using cutting-edge cryo-EM, microbiology, and biochemistry in our group! Join us and uncover how bacterial defenses eliminate predators and engineer next-gen biotech tools. 🔥 Apply by Jan 8, 2026 Details: phd.pages.ista.ac.atphd.pages.ista.ac.at 02930
Reposted by Erin DohertyBel Esain @isabelesain.bsky.social · 26/11/2025Super cool work by @erinedoherty.bsky.social and @jnoms.bsky.social ! 💪🏼 Viruses hack bacterial immunity by breaking down the nucleotide signals that trigger defence 🦠🧬 032
Reposted by Erin DohertyInnovative Genomics Institute @innovativegenomics.bsky.social · 25/11/20251/2 New from co-first authors @erinedoherty.bsky.social and @jnoms.bsky.social of the @doudna-lab.bsky.social — Bacteria fight off viruses using tiny molecular “alarm signals” made of nucleotides. To survive, viruses must find ways to shut these signals down.innovativegenomics.orgNew Method Uncovers How Viruses Evade Immune Responses — and How We Might Fight BackExplore how viruses evade immune responses by developing enzymes that disrupt molecular alarm signals in host cells. 182
Reposted by Erin DohertyJason Nomburg @jnoms.bsky.social · 25/11/2025So happy to see this work out! Was such a pleasure to co-lead this effort with Erin. Do you like viral immune evasion, and using protein structure to study immune antagonists? Give it a read! 0178
Erin Doherty @erinedoherty.bsky.social · 25/11/2025Work I co-led with @jnoms.bsky.social is now online at @cp-cellhostmicrobe.bsky.social ! We revealed a previously unrealized diversity of viral immune-evasion proteins that selectively destroy different cyclic nucleotide signals used in bacterial immunity. www.sciencedirect.com/science/arti...sciencedirect.comDivergent viral phosphodiesterases for immune signaling evasionCyclic dinucleotides (CDNs) and other short oligonucleotides play fundamental roles in immune system activation in organisms ranging from bacteria to … 15121
Erin Doherty @erinedoherty.bsky.social · 23/11/2025Such a privilege to see my summer mentee present her work at #ABRCMS2025! 092
Reposted by Erin DohertySarah T Roberts, PhD @ubiquity75.xyz · 02/11/2025The President’s Postdoctoral Fellowship Program, PPFP, has been a jewel in the crown for faculty development and recruitment at the University of California for years and the results have been an expanded faculty with almost 100% tenure rates — unprecedented success. 8309126
Reposted by Erin DohertyJason Nomburg @jnoms.bsky.social · 17/10/2025Highly recommend this position for anyone looking for a technician job! Erin is a wonderful mentor to junior scientists, and her work is awesome! 121
Erin Doherty @erinedoherty.bsky.social · 17/10/2025I'm hiring a lab technician to help me explore some exciting new questions about virus-host interactions! Biochemistry and/or mammalian cell culture experience is desired. 099
Reposted by Erin DohertyAshley Sullivan @aesully98.bsky.social · 03/10/2025A little late to the Panoptes party, but I’m delighted to share that our paper is published! 👁️ www.nature.com/articles/s41...nature.comThe Panoptes system uses decoy cyclic nucleotides to defend against phage - NatureThe Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy of sensing immune evasion through second-messenger surveillance. 1268
Reposted by Erin DohertyMalcolm White @mfwhite2.bsky.social · 02/10/2025My pleasure @erinedoherty.bsky.social and @benmorehouse.bsky.social - for me this was the stand-out discovery of the last year in the field 0247
Reposted by Erin DohertyDoudna Lab @doudna-lab.bsky.social · 02/10/2025New paper online at @nature.com from co-leads @erinedoherty.bsky.social + @benadler.bsky.social ! 1299
Reposted by Erin DohertyBen Morehouse @benmorehouse.bsky.social · 01/10/2025Our story describing the Panoptes bacterial immune defense system is now finally peer-reviewed and published today! www.nature.com/articles/s41...nature.comThe Panoptes system uses decoy cyclic nucleotides to defend against phage - NatureThe Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy of sensing immune evasion through second-messenger surveillance. 49043
Erin Doherty @erinedoherty.bsky.social · 02/10/2025Now online at @nature.com we show how the Panoptes defense system protects against viruses that attempt immune evasion - and expands our understanding of the role of oligonucleotides in immunity. Check out this work co-led with @benadler.bsky.social here: www.nature.com/articles/s41...nature.comA miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling - NaturePanoptes, an anti-phage defence system against virus-mediated immune suppression, is revealed. 25622
Reposted by Erin DohertyWaggoner Lab @labwaggoner.bsky.social · 01/10/2025Bacteria use a decoy defense molecule to set a trap for viruses @doudna-lab.bsky.social @ucberkeleyofficial.bsky.social @ucirvine.bsky.social @aaronwhiteley.bsky.social @colorado.edu @aesully98.bsky.social www.nature.com/articles/d41... www.nature.com/articles/s41... www.nature.com/articles/s41... 183
Reposted by Erin DohertyBen Adler @benadler.bsky.social · 01/10/2025Thank you to everyone who helped make this story happen! Obligatory meme to summarize: “How I imagine phage facing CBASS and mCpol” 172
Reposted by Erin DohertyInnovative Genomics Institute @innovativegenomics.bsky.social · 01/10/2025Out today in @nature.com, a new paper from @doudna-lab.bsky.social lab, co-first authors @erinedoherty.bsky.social + @benadler.bsky.social and collaborators at @ucsandiego.bsky.social unveils a powerful new defense strategy in the arms war between viruses + microbes. Read here: ow.ly/mPQI50X5g68 0175
Reposted by Erin DohertyVivek Mutalik @vivekmutalik.bsky.social · 01/10/2025Super cool paper by @benadler.bsky.social @erinedoherty.bsky.social #phage #phagesky 183
Reposted by Erin DohertyJason Nomburg @jnoms.bsky.social · 01/10/2025Huge congrats for such an amazing story, @benadler.bsky.social and @erinedoherty.bsky.social!! 272
Reposted by Erin DohertyBen Adler @benadler.bsky.social · 01/10/2025Today in @nature.com , we highlight how a cousin of CRISPR-Cas10, mCpol, establishes an evolutionary trap in anti-phage immune systems. Check out @erinedoherty.bsky.social and my work from @doudna-lab.bsky.social lab here: www.nature.com/articles/s41...nature.comA miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling - NaturePanoptes, an anti-phage defence system against virus-mediated immune suppression, is revealed. 311054
Reposted by Erin DohertyDoudna Lab @doudna-lab.bsky.social · 30/09/2025Congrats to Doudna lab postdoc @erinedoherty.bsky.social! 🎊 0111
Reposted by Erin DohertyAAUP @aaup.org · 12/09/2025The AAUP stands in full solidarity w/HBCU faculty, staff, students, admin, & alumni. We call on law enforcement & governmental authorities to treat these threats w/ the seriousness they deserve, investigate thoroughly, hold responsible parties accountable, & strengthen preventive measures on campus.aaup.orgAAUP Condemns Terrorist Threats to HBCUsThe AAUP condemns unequivocally the recent and recurring bomb and terroristic threats against multiple HBCUs. Threats targeting HBCUs are attacks not only on individuals but on the legacy of resilienc... 212857