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Petr Skopintsev

@petrskopintsev.bsky.social
194 followers 338 following 8 posts

Postdoc @ UC Berkeley

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Reposted by Petr Skopintsev
Swiss National Science Foundation (SNSF) @snsf.ch · 22/09/2026
🏆 Biochemist Martin Jinek is the winner of the Swiss Science Prize #MarcelBenoist 2026, considered the Swiss #Nobel Prize. He contributed to the development of molecular scissors, namely CRISPR-Cas9 technology. Read more ➡️ sohub.io/3hs4
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Petr Skopintsev @petrskopintsev.bsky.social · 21/09/2026
🔥
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Reposted by Petr Skopintsev
Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Erin Doherty @erinedoherty.bsky.social · 31/08/2026
I'm very excited to share that this January, I’ll be joining Columbia University’s Department of Biological Sciences as a tenure-track Assistant Professor 🏙️🦁🍎 @columbiauniversity.bsky.social 🧬 Learn more: dohertylab.org Thank you to all those who supported me along the way!
dohertylab.org
Doherty lab at Columbia University | immune signaling | Sherman Fairchild Center, 1212 Amsterdam Ave, New York, NY 10027, USA
We treat viral antagonism as a discovery tool for host biology to reveal fundamental mechanisms of immune signaling and new opportunities for therapeutic intervention.
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Conner Langeberg @clangeberg.bsky.social · 05/09/2026
RNA structure prediction lags behind proteins for lack of data. RNASSTR, our new dataset, offers millions of RNA sequence-secondary structure pairs, split structurally to avoid train/test leakage. 📄 doi.org/10.1261/rna.... 📰 innovativegenomics.org/news/ai-mode...
doi.org
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Molecular Cell @cp-molcell.bsky.social · 29/08/2026
Online Now: Oriented binding of transcription factors to nucleosomes remodels chromatin at human promoters Online now:
dlvr.it
Oriented binding of transcription factors to nucleosomes remodels chromatin at human promoters
Transcription factors (TFs) differ in their ability to interact with nucleosomes, and most TFs need other TFs to locate their motifs in the human genome. Here, Xiao et al. show that two ELF2 proteins are able to unwind DNA from nucleosomes and access all of their motifs in the genome.
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Zehan Zhou @zehanzhou.bsky.social · 05/08/2026
We are PUBLISHED!!! Our mechanistic work on how CRISPR-Cas ancestors unwind DNA and how this can be used to engineer hypercompact plant editors can now be found on Mol Cell- if you are interested in what defines a good genome editor, this read is for you 😎 🔗 www.sciencedirect.com/science/arti...
sciencedirect.com
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Petr Skopintsev @petrskopintsev.bsky.social · 05/08/2026
Martin is great, please spread the news
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Ben Lehner @benlehner.bsky.social · 03/08/2026
1st genome sequenced (Sanger 1977), 1st genome synthesised (Venter 2003), 1st genome + proteome fully mutated (Huijin Xiangua 2026!) @crg.eu @sangerinstitute.bsky.social Complete Mutagenesis of the Genome and Proteome of ΦX174 www.biorxiv.org/content/10.6...
biorxiv.org
Complete Mutagenesis of the Genome and Proteome of ΦX174
The bacteriophage ΦX174 was the first genome to be sequenced and the first to be chemically synthesised. Here we present a complete map of the consequences of changing every nucleotide in the ΦX174 ge...
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marialukarska.bsky.social @marialukarska.bsky.social · 24/07/2026
I’m happy to share our pre-print exploring the activity and specificity trade-offs in adenine base editors. Thanks to my amazing co-authors Luke Oltrogge, @hnisonoff.bsky.social, and all the other contributors @jlistgarten.bsky.social @savagecatsonly.bsky.social @innovativegenomics.bsky.social 🧵1/7
biorxiv.org
Activity and specificity trade-offs in adenine base editors
Adenine base editors (ABEs) are CRISPR effectors that introduce A-T to G-C transitions in the genome using a nucleotide deaminase fused to a Cas protein. ABEs have been evolved to have very high editi...
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Reposted by Petr Skopintsev
Nature @nature.com · 17/07/2026
Scientists have harnessed AI models to create synthetic CRISPR proteins that edit the genome more efficiently than those seen in nature go.nature.com/4f8AN3n
go.nature.com
CRISPR gets a power boost from AI-designed ‘molecular scissors’
Researchers used artificial intelligence to design functional CRISPR enzymes not seen in nature.
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Martin Pacesa @martinpacesa.bsky.social · 07/07/2026
We often talk about complex protein folds but what does that really mean? Turns out we don't have a good metric for it. So we made a game to make one! Head over to our website to vote on which fold you think is more complex and why! pacesalab.com/foldcomplexi...
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Petr Skopintsev @petrskopintsev.bsky.social · 17/07/2026
Many thanks to @andymurdock.bsky.social, Glenn Ramit, @hoperhenderson.bsky.social , and @innovativegenomics.bsky.social for this wonderful press release - and for highlighting the previous studies that laid the foundation for this work!
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Petr Skopintsev @petrskopintsev.bsky.social · 17/07/2026
Proud to present our work, published today in @science.org! My deepest gratitude to @isabelesain.bsky.social, @evandeturk.bsky.social, Jennifer and our collaborators in the Doudna, Cate, Banfield, and Jacobsen labs, and the @innovativegenomics.bsky.social! I hope you enjoy reading it! ✨
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Yun S. Song @yun-s-song.bsky.social · 21/02/2026
Can we simulate realistic evolutionary trajectories and “replay the tape of life”? In this work, we propose a flexible, generalizable deep learning framework for modeling how the entire protein sequence evolves over time while capturing complex interactions across sites. 1/n doi.org/10.64898/202...
doi.org
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Nature Structural & Molecular Biology @natsmb.nature.com · 18/02/2026
New online: Structure and mechanism of antiphage retron Eco2
dlvr.it
Structure and mechanism of antiphage retron Eco2
Nature Structural & Molecular Biology, Published online: 18 February 2026; doi:10.1038/s41594-026-01754-2This study shows how the bacterial retron Eco2 defends against viruses. Phage nucleases trigger activation of Eco2, which cuts RNAs, shuts down protein production and stops phage replication.
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Petr Skopintsev @petrskopintsev.bsky.social · 19/02/2026
A beautiful study from the Pausch lab!
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Phil Holliger @philholliger.bsky.social · 13/02/2026
New paper from my group in @science.org : "A small polymerase ribozyme that can synthesise itself and its complementary strand" www.science.org/doi/10.1126/... Outstanding work by @edogia.bsky.social
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Patrick Bryant @patrickbryant1.bsky.social · 07/02/2026
Introducing The Structural History of Eukarya (SHE): The first proteome-scale phylogeny constructed entirely from 3D structure. We computed 300 trillion alignments across 1,542 species to map the tree of life. 🧵👇 (1/5)
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Erin Doherty @erinedoherty.bsky.social · 10/12/2025
A very nice Preview of our work in @cp-cellhostmicrobe.bsky.social this morning from Chrishan Fernando & Nicole D. Marino! www.cell.com/cell-host-mi...
cell.com
Viral enzymes degrade to evade
Across all domains of life, immune systems rely on nucleotide-based signaling molecules to activate defense responses. In a recent Cell Host & Microbe study, Doherty, Nomburg, and colleagues identify ...
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Petr Skopintsev @petrskopintsev.bsky.social · 09/12/2025
Excited to share our first work on protein design! Huge thanks to the entire team, and especially to Bel, Evan, to the Doudna, Jacobsen, Cate, Banfield labs, all co-authors, and my D-lab mates! 💫
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Petr Skopintsev @petrskopintsev.bsky.social · 09/12/2025
My main postdoc paper repost marked as spam - just for the memories. Shame, shame @moderation.bsky.app! 😀
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Petr Skopintsev @petrskopintsev.bsky.social · 09/12/2025
Excited to share our first work on protein design! Huge thanks to the entire team, and especially to @isabelesain.bsky.social, @evandeturk.bsky.social, @doudna-lab.bsky.social, @jacobsenucla.bsky.social, @jhdcate.bsky.social, @banfieldlab.bsky.social, @innovativegenomics.bsky.social!
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