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Matt Doyle

@doylemt1.bsky.social
907 followers 749 following 72 posts

🇦🇺 Senior Lecturer at @sydneyuni.bsky.social and former NIHer. Research: Bacterial outer membrane biogenesis - membrane protein folding - protein translocation across membranes - novel antibiotics. He/him.

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Reposted by Matt Doyle
Helen Czerski @helenczerski.bsky.social · 10/09/2026
I'd vote for the future where there's the option of a box that pops up when lazy nonsense appears and says "this looks like AI slop. Would you like me to find a piece written by a thoughtful human on this topic - something that's valued by other humans and is actually worth reading?"
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Kedrov Lab @ HHU @kedrov-lab.bsky.social · 23/08/2026
Preprint🚨: Exopolysaccharide export complex PelBC of Pseudomonas aeruginosa attenuates the dynamics of the surrounding outer membrane. Longer in preparation than in actual making. Blame summer time and perfectionism 🫠 A brief tour, to keep the feed alive over the wknd www.biorxiv.org/content/10.6...
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Kate Michie @kmichie.bsky.social · 10/08/2026
This is a great opportunity to present your work! Please send your abstracts to secure a spot. 🤩 Anything in computational structural biology fits the remit.
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Australian BioCommons @ausbiocommons.bsky.social · 10/08/2026
Calling all #EMCR in #StructuralBiology The ASBC is inviting Australian EMCRs to share their work at a special edition of their quarterly community meeting on 4 November 2026 @kmichie.bsky.social Find out more 🔗
biocommons.org.au
Invitation to present your structural biology research — Australian BioCommons
The Australian Structural Biology Computing Community is seeking Australian EMCR researchers in structural biology to share their work at a special online meeting.
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ARC Tracker @arc-tracker.bsky.social · 15/07/2026
So, @arc-gov-au.bsky.social: Why would the UK want to do this? Could it be that much shorter grant processing times are … a good thing? Could there be a competitive disadvantage in taking 4.8 times longer to process grants? What do you think, Minister @jasonclaremp.bsky.social?
Two-panel meme image of Principal Skinner from The Simpsons (wondering if he’s out of touch but ends up concluding that it’s the children who are wrong) but adapted here to mock the Australian Government’s recent massive increase to research grant processing times, contrary to the ambitions of other countries and the impact it has on researchers and universities.
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ARC Tracker @arc-tracker.bsky.social · 15/07/2026
The UK government’s research grant agency wants to cut grant processing times from 195 days to 90. Meanwhile, the Australian equivalent, has increased it from 195 days to at least 435 (DP26 vs. DP27). This is for comparable, “applicant led grants”. Make it make sense.
researchprofessionalnews.com
UKRI pledges to cut grant processing time in half - Research Professional News
Funder’s new five-year strategy aims to boost national priority fields, while backing curiosity-driven research
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Katherine Fenn @katherinefenn.bsky.social · 10/07/2026
Read our new paper! We show how the protease BepA binds the BAM complex and undergoes striking conformational changes, embedding its water-soluble lid into the membrane to cleave outer membrane proteins. www.nature.com/articles/s41... #cryoEM #astburycentre
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Debnath Ghosal @debnathghosal.bsky.social · 06/07/2026
Had an amazing day at the @Sydney_Uni, presenting our work at the SABA BacChats Seminar Series! Great scientific discussions throughout the day. Thanks again for the warm hospitality, I thoroughly enjoyed the visit! @doylemt1.bsky.social and @BilgeErcan, thank you both for everything.
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Vanni Lab at UNIFR, Switzerland @labvanni.bsky.social · 12/06/2026
This amazing work by @danialv.bsky.social and Bodan Hu is now out in peer-reviewed form at @cp-cell.bsky.social with a lot of new simulations! Check it out if interested in lipid transport!
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Brady Johnston @bradyajohnston.bsky.social · 28/05/2026
Some very cool simulations, look at those little guys climb that ladder! #MolecularNodes
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Jenny Martin @jennymartin-ccc.bsky.social · 01/06/2026
why would anyone vote ON, we would end up like the USA: ruled by incompetents, politicians lining their pockets, grifting for mega billionaires, cost of living skyrockets, science and facts ignored to detriment of health and community. If you cant vote labour or lib vote green or independent
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corrylab.bsky.social @corrylab.bsky.social · 27/05/2026
Excited to share this paper from @yiechanglin.bsky.social showing how lipids can move between bacterial membranes along the bridge like protein TamB. Also happy to be able to post the cool movie. 🎥🌟 #MDsimulations #StructuralBiology doi.org/10.1016/j.bp...
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Dmitry Shvarev @dmitryshvarev.bsky.social · 20/05/2026
This has been a long journey and it's exiting to see our story about the Atg2-18 lipid transfer complex, headed by Sabrina Chumpen, published in @embojournal.org! Great teamwork of the labs @arnemoeller.bsky.social, Stefano Vanni, Fulvio Reggiori and Christian Ungermann! #cryoEM #autophagy #membrane
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Antibiotic Steward 🅱️C🆔🅿️🌟 @absteward.bsky.social · 06/05/2026
Static vs. cidal: it’s not complex; it’s simply incorrect @bradspellberg.bsky.social et Al Honored to be part of this amazing group who challenges dogmas and debunk ID myths #idsky #microsky journals.asm.org/doi/10.1128/...
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Kedrov Lab @ HHU @kedrov-lab.bsky.social · 29/03/2026
What a fascinating story is hiding in bioRxiv!! An elaborate work of @doylemt1.bsky.social an co-workers to understand the function of the bacterial TAM machinery ❤️‍🔥 and here it is, a rich body of evidence for the "ancient" bridge for the lipid transfer 👇 www.biorxiv.org/content/10.6...
biorxiv.org
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ANU Research School of Biology @biologyanu.bsky.social · 16/03/2026
Join us on campus on Thursday, 26 March 2026 at 1pm for a seminar by Dr Matthew Doyle @doylemt1.bsky.social, Senior Lecturer from the Faculty of Medicine and Health, The University of Sydney. Details: rb.gy/4uw4uz
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Shu-Sin Chng @figlegend.bsky.social · 03/03/2026
And now published as an Observation! Many congrats to @weeboont.bsky.social for discovering that AsmA superfamily proteins, YhdP/TamB/YdbH, localize to the cell poles in E. coli, curiously AFTER division has occurred! 1/3 #MicroSky journals.asm.org/doi/10.1128/...
journals.asm.org
Polar localization of putative phospholipid transporters in Escherichia coli | mBio
The outer membrane (OM) of Gram-negative bacteria serves as an effective permeability barrier and confers intrinsic antibiotic resistance. This barrier function requires distinct distribution of lipid...
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The Tattooed Professor @schwessinger.bsky.social · 17/02/2026
My predictions are that grant delays have a much more severe impact on Australia's productivity than any real foreign interference enabled by any ARC grants.... maybe the delay was always the intended interference.
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Danny Kingsley @dannykay68.bsky.social · 17/02/2026
DELAY: the work associated with protecting Australian research from foreign interference are causing hold ups and issues for grant applications. www.timeshighereducation.com/news/grant-d... “The requirements we now have to go through…are more extensive and time-consuming than we had imagined,”
timeshighereducation.com
Grant delays feared as ARC ramps up ‘due diligence’
Researchers brace for renewed funding uncertainty as security checks prove ‘more time-consuming than imagined’
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Debnath Ghosal @debnathghosal.bsky.social · 12/02/2026
A. baumannii is one of the most notorious multidrug-resistant pathogens, capable of forming drug-tolerant biofilms that make infections exceptionally difficult to treat. But how are these complex microbial fortresses built? Just published in Nat Comms. pubmed.ncbi.nlm.nih.gov/41654547/
pubmed.ncbi.nlm.nih.gov
Antiparallel stacking of Csu pili drives Acinetobacter baumannii 3D biofilm assembly - PubMed
Many Gram-negative nosocomial pathogens rely on adhesive filaments, known as archaic chaperone-usher pili, to establish stress- and drug-resistant, multi-layered biofilms. Here, we uncover the mechanism by which these pili build three-dimensional (3D) biofilm architectures. In situ analyses of Acine …
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Kate Michie @kmichie.bsky.social · 12/02/2026
Beautiful work Deb! Check out these structures? Biofilms are very interesting. 🧶🧬
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Lorne Proteins @lorneproteins.bsky.social · 08/02/2026
Fabien Munder - New strategies to fight AMR. Bacterial competition via L-type pyocins; targeting (1) BamA EC loop 6, (2) beta-strand 1. Inhibit beta barrel assembly by blocking the BAM barrel lumen. Increase cell permeability - holes in the OM. 👏 (EMReady post-processing) 🤓 #lorneproteins2026
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Brett Collins @brettcollins.bsky.social · 08/02/2026
Really beautiful cryoET of periplasmic flagella structures and amazing animations
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Brett Collins @brettcollins.bsky.social · 09/02/2026
Kate Michie talking about her work on archaeal cytoskeleton. @lorneproteins.bsky.social
Kate Michaels at Lorne Protein
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Lorne Proteins @lorneproteins.bsky.social · 09/02/2026
Neg charged lactate binds pocket when His positively charged. Lactate binds favourably, but only lactic acid can leave. Proton enters to charge His, attracts negative lactate, proton neutralises lactate to lactic acid, then LA leaves.
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Brett Collins @brettcollins.bsky.social · 09/02/2026
First speaker Ashleigh Kropp of the most fun session of the Lorne Protein Meeting the Anders Young Investigators session. @lorneproteins.bsky.social
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Brett Collins @brettcollins.bsky.social · 09/02/2026
Yan Jiang is the next Anders session speaker presenting her work on the SLC1A transporter. @lorneproteins.bsky.social
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Brett Collins @brettcollins.bsky.social · 09/02/2026
Emily Furlong (UQ alumnus 😄) talking about her new work on ABC transporters. @emfurlong.bsky.social @lorneproteins.bsky.social
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Lorne Proteins @lorneproteins.bsky.social · 10/02/2026
Session 7 ⚡️🌩 talks time!! Jack Zeng Unravelling Promiscuity - OCT1 gating - structures of ligand bound states. Interrogating binding and transport specificity and mechanism. #lorneproteins2026
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ARC Tracker @arc-tracker.bsky.social · 05/02/2026
No, I was wrong. The ARC just posted on X – you know, the platform that whose offices have been raided by French police because it produces and hosts child exploitation materials? Yes, that X.
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ARC Tracker @arc-tracker.bsky.social · 15/01/2026
Just noting that ARC is still on X/Twitter. Despite it now being clear that that platform produces child exploitation materials, they remain active there. If you interact with ARC staff, I really think they need to answer this question. It's moved being simply "disconnected from researchers" to … 🤢
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Hannah Pugh @hannahpugh.bsky.social · 12/01/2026
The coolest finding of my PhD is finally out! E. coli has a 7th RND pump that is present in phylogroups B2/D/E/F but absent in A/B1/C. As a result EefABC has been absent in all K-12 RND studies! Co-authored by the very talented Dr. Lizzy Darby. @jessicamablair.bsky.social doi.org/10.1099/mgen...
doi.org
The Resistance-Nodulation-Division efflux pump EefABC is highly conserved within lineages of E. coli commonly associated with infection
Resistance-nodulation-division (RND) efflux pumps confer multidrug resistance in Gram-negative bacteria and are critical for many physiological functions including virulence and biofilm formation. The...
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Matt Doyle @doylemt1.bsky.social · 13/01/2026
💊 We are excited to share our preprint that describes an inhibitor of the widespread and highly conserved Two-Partner Secretion (TPS) system that is critical for Gram-negative pathogens to export a multitude of diverse virulence factors. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
First inhibitor of a bacterial two-partner secretion system.
Two-partner secretion system transporter proteins (TpsB) are widely conserved across Gram-negative pathogens. TpsB family proteins secrete exoprotein virulence factors that perform a myriad of functions such as adhesion and immune modulation. Despite their incredible importance in bacterial infectious disease, TpsB inhibitors have not yet been discovered. Here, we describe a potent inhibitor of FhaC, a TpsB protein produced by Bordetella spp . FhaC secretes the exoprotein FhaB that is essential for the establishment of whooping cough. We designed a peptide called P1 that we predicted would prevent substrate binding and lock FhaC in a secretion-inactive state. Simulations and biochemical assays supported our hypothesis and identified interactions important for P1 binding to FhaC. Strikingly, we observed that the peptide strongly inhibited FhaB secretion from clinical isolates and broadly reduced correlates of virulence. Together, this work provides a strong case for further development of a novel class of anti-TpsB anti-virulence compounds. ### Competing Interest Statement The authors have declared no competing interest. National Institute of Allergy and Infectious Diseases, R21AI180112
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Vanni Lab at UNIFR, Switzerland @labvanni.bsky.social · 12/01/2026
Happy to finally share the amazing results of our long-term collaboration with Karin Reinisch’s lab on how bridge lipid-transfer proteins (BLTPs) cooperate with partner proteins to orchestrate lipid delivery. A quick thread (1/7) www.biorxiv.org/content/10.6...
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ARC Tracker @arc-tracker.bsky.social · 12/01/2026
#ARCschedule Jan26 update ARC announced huge delays & 3-month announcement windows (used to be 2 weeks). Delay in months per scheme: 🔹LP25: 1–4 🔹IC/IH26: 1–4 🔹FT26: 1–3 🔹LP26: 2.5–5.5 🔹LE27: 2–5 🔹DE27: 1.5–4.5 🔹DP27: 3–6 Just … appalling. Unworkable. Data ▶️ docs.google.com/spreadsheets...
ARC grant scheme timetable, including open, close and anticipated outcome announcement dates for Expressions Of Interest and full applications, plus rejoinder periods and selection meeting dates.
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ARC Tracker @arc-tracker.bsky.social · 12/01/2026
⁉️The ARC has delayed outcomes of ALL grants 1–4 months & increased scheduled outcome windows from 2 weeks to 3 months! This reverses 4 years of progress in providing greater certainty & ability to plan for researchers, their families & unis. Their excuse? Security checks under new ARC legislation👇
Black text on white background. Screenshot of ARC’s Network Message regarding delays to grant announcements because of new security arrangements.
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ARC Tracker @arc-tracker.bsky.social · 12/01/2026
The ARC’s processes are back to being farcical, @jasonclaremp.bsky.social You advocated for a streamlined, efficient, faster ARC, but all that progress has been undone. How can they claim to fund “innovation” with more than a year between initial proposal & outcomes? It should be 6 months, not 16!
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ARC Tracker @arc-tracker.bsky.social · 12/01/2026
ARC’s new schedule is at www.arc.gov.au/funding-rese... It will now take A YEAR, or more, for researchers to know whether their grants are successful or not. For example, early-career researchers are to submit DECRA proposals 11 March this year but they may not be announced 'til 9 March NEXT YEAR!
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James Davies @james-s-davies.bsky.social · 08/01/2026
Our paper on the human carnitine transporter OCTN2 (SLC22A5) is out in @natcomms.nature.com! We solved structures of OCTN2 in multiple states and explored how carnitine transport is Na⁺-dependent, providing a framework for understanding SPCD disease causing variants and drug interactions.
rdcu.be
Structural basis of sodium ion-dependent carnitine transport by OCTN2
Nature Communications - Carnitine uptake by OCTN2 supports fatty acid metabolism. Here, authors report cryo-EM structures of human OCTN2, revealing the mechanism of sodium ion-dependent carnitine...
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USyd Core Research Facilities @sydney-crf.bsky.social · 12/11/2025
Congrats to #USYD's A/Prof Yu Heng Lau for landing a $958,564 ARC Discovery grant to develop tiny protein cages to improve how plants use carbon, water & nutrients + boost crop yields. Sydney Analytical + Sydney Mass Spectrometry look forward to continuing our collaboration. @yuhenglau.bsky.social
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Dutchscientist (the real one) @dutchscientist.bsky.social · 26/10/2025
The scientific process #science
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WHO @who.int · 15/10/2025
Between 2018–2023, antibiotic resistance increased in over 40% of the pathogen–antibiotic combinations monitored, with an average annual rise of 5–15%. Resistance is highest in the WHO South-East Asian & Eastern Mediterranean Regions, where 1 in 3 reported infections were resistant 👉 bit.ly/438Ta1u
Text reads “Antibiotic resistance is rising,” with an upward arrow and a “40%” warning icon. Below, a text box says: “Between 2018 and 2023, resistance increased in over 40% of the monitored pathogen–antibiotic combinations, with an annual rise of 5–15%.”
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Augustinas Silale @augustsilale.bsky.social · 02/10/2025
Our paper on the Bacteroidota BAM complex is out in @natmicrobiol.nature.com! With @madejmar.bsky.social We found that BAM in Bacteroides and Porphyromonas gingivalis has a distinct architecture from BAM in Proteobacteria. doi.org/10.1038/s415...
doi.org
Structure of a distinct β-barrel assembly machinery complex in the Bacteroidota - Nature Microbiology
Structural and functional characterization of the β-barrel assembly machinery complex in Bacteroidota reveals a distinct, seven-component complex with a large extracellular domain that may enable β-barrel–surface lipoprotein complex assembly.
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Michael Landsberg @dr-berger.bsky.social · 01/10/2025
Thanks for coming Doyle lab! It was great to have you here.
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Australian Society for Biochemistry and Molecular Biology - 2025 @asbmbaus.bsky.social · 01/10/2025
Congratulations to all our poster and speaker prize winners!! 🏆🏆🏆
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Australian Society for Biochemistry and Molecular Biology - 2025 @asbmbaus.bsky.social · 01/10/2025
And that's a wrap! A huge shout out goes to our conference chair Michael Landsberg @dr-berger.bsky.social and the rest of the organizing committee for putting together such a vibrant #ASBMB2025! See you all at #ComBio2026!
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Matt Doyle @doylemt1.bsky.social · 01/10/2025
Very proud of both my students @itzfredz.bsky.social (Alfred Hartojo) and @alanaheisenhuth.bsky.social (Alanah Eisenhuth) for presenting their research at ASBMB2025. Also congrats to Alfred for his poster prize! 👏🏆
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Rhys Grinter @rhyswg.bsky.social · 20/09/2025
The outer membrane of Gram-negative bacteria blocks many antibiotics. Our latest work reveals that L-type pyocins bypass this barrier by inactivating the BAM complex, killing Pseudomonas aeruginosa without entering the cell, providing a new blueprint for beating antibiotic resistance.
biorxiv.org
A Protein Antibiotic Inhibits the BAM Complex to Kill Without Cell Entry
Many antibiotics are ineffective against Gram-negative pathogens such as Pseudomonas aeruginosa because they cannot penetrate the bacterial outer membrane. Here, we show that protein antibiotics calle...
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Brett Collins @brettcollins.bsky.social · 20/09/2025
This is an amazing paper led by the Grinter lab on bacterial protein antibiotics called pyocins and the mechanism by which they inhibit the BAM outer membrane complex. @rhyswg.bsky.social, @knottrna.bsky.social, @debnathghosal.bsky.social, @doylemt1.bsky.social, @fabianmunder.bsky.social
biorxiv.org
A Protein Antibiotic Inhibits the BAM Complex to Kill Without Cell Entry
Many antibiotics are ineffective against Gram-negative pathogens such as Pseudomonas aeruginosa because they cannot penetrate the bacterial outer membrane. Here, we show that protein antibiotics calle...
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Debnath Ghosal @debnathghosal.bsky.social · 02/08/2025
📣 New paper alert! Just out in Cell Reports! pubmed.ncbi.nlm.nih.gov/40644298/ Thrilled to share that we have discovered a brand-new anti-phage defense system! Bacteria have evolved various defense strategies (CRISPR etc) to counter phage attacks. We found a new one - fascinating and dramatic ⚔️🦠❄️🔬
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