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Charles Bayly-Jones

@charlesbj.bsky.social
1.5K followers 991 following 387 posts

Investigating protein nanomachines and their dynamics. Laboratory head at Monash University 🇦🇺. ARC DECRA Fellow. Structural biologist. Author of WIGGLE. He/Him. 🏳️‍🌈

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Charles Bayly-Jones @charlesbj.bsky.social · 28/09/2026
Chlamy spotted in the wild @cellarchlab.com
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Charles Bayly-Jones @charlesbj.bsky.social · 23/09/2026
Amazing structure
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Charles Bayly-Jones @charlesbj.bsky.social · 21/09/2026
Nice review covering AFM state-of-the-art
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Jesse Felder @jessefelder.com · 16/09/2026
“It is unprecedented. We have two major waterways obstructed, active attacks, Iran escalating attacks, proxies being active and no signs of diplomatic talks. It’s a disastrous situation when you’re looking at it from an energy security angle.” www.nytimes.com/2026/09/16/b...
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Milot Mirdita @milot.bsky.social · 16/09/2026
ColabFold 1.6.3 is out! 2.5x faster, pip-installable, ipSAE+pDockQ2 scores. Thanks Choonghwan Lee, Marielle Russo, Gyuri Kim 🐍pip install colabfold[alphafold] CF2 Sneak Peak with AF3/Boltz/Protenix/ESMFold2… 🐍pip install "colabfold[alphafold3]@git+https://github.com/sokrypton/ColabFold@af3-preview"
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Beckmann Lab @beckmannlab.bsky.social · 14/09/2026
New preprint! 👀RNAse activity has to be tightly regulated.✂️🧬Here, we present the dynamic architecture of the conserved Rixosome complex – a major player in ribosome maturation and heterochromatin maintenance. Our results give insights into its mode of activation.👇 #cryoEM #Ribosome #RNA
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Nature Structural & Molecular Biology @natsmb.nature.com · 14/09/2026
New online: Cryo-EM structure, enzymatic activity and genome targeting of canonical PRC1
dlvr.it
Cryo-EM structure, enzymatic activity and genome targeting of canonical PRC1
Nature Structural & Molecular Biology, Published online: 14 September 2026; doi:10.1038/s41594-026-01885-6Ciapponi et al. determine the cryo-electron microscopy structure of the canonical Polycomb repressive complex 1 holocomplex and show how its architecture coordinates complex assembly, H2A monoubiquitination and genomic targeting.
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bioRxivpreprint @biorxivpreprint.bsky.social · 15/08/2026
De novo design of autocatalytically forming intra- and intermolecular isopeptide bonds to construct rigid covalent protein assemblies www.biorxiv.org/content/10.64898/20…
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Dr Monique Ryan @mon4kooyong.bsky.social · 11/08/2026
It’s Census night! For all the unconventional and conventional households out there - let’s stand up and be counted. Every answer matters. Every Australian matters.
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Charles Bayly-Jones @charlesbj.bsky.social · 04/08/2026
Binders for all!
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Charles Bayly-Jones @charlesbj.bsky.social · 02/08/2026
Amazing, well done Bronte!
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Misha Kudryashev @mishakudryashev.bsky.social · 01/08/2026
Take a look at our new paper on the structure of the EHD2 that, upon oligomerization, forms rings that remodel the plasma membrane and form caveolae. Beautiful work by Elena, Vasya @vasiliimikirtumov.bsky.social, Jeff & Oliver Dumke's team; take a look: www.nature.com/articles/s41...
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Martin Vögele @martinvoegele.bsky.social · 31/07/2026
Sometimes I really miss the old Science Twitter that fizzled out around 2023. 🥺
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drug doc @pkpd-babe.bsky.social · 27/07/2026
My 4yo came home from his first day at STEM summer camp and said, “There are a lot more boys than girls there. I think science is for everyone.” 🥺 🧪
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Bradley Spicer @bradleyspicer.bsky.social · 06/07/2026
Very excited to see this work, on our insecticidal pore forming protein come out. This was an enormous amount of work and outstanding collaboration between Monash and Cardiff Uni. first put together by Prof Colin Berry. www.nature.com/articles/s41...
nature.com
Structural basis for independent pore function of Vpb4 from Bacillus thuringiensis - Nature Communications
Bacterial Exotoxin B proteins are typically binary pore-forming toxins. Here, authors characterise Vpb4, a homologue from entomopathogenic Bacillus thuringiensis, and reveal the structural basis enabl...
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ARC Tracker @arc-tracker.bsky.social · 22/06/2026
#DiscoveryProjects #DP27 Detailed assessor reports should be released in ARC's RMS tomorrow (23 Jun). Normally about 11am, Canberra time (but it varies). Remember the #ARC3DayRule: Think an assessment is "inappropriate"? You've only got 3 days to lodge a "request for review" 👇
researchgrants.gov.au
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Charles Bayly-Jones @charlesbj.bsky.social · 09/06/2026
Oooooh I'm feeling inspired
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Dimitry Tegunov @dtegunov.bsky.social · 03/05/2026
We're super excited to share MissAlignment: a new ML-based approach to reference-free tilt series alignment, spearheaded by @martenchaillet.bsky.social. We think it's going to make your cryo-ET life a lot better. Preprint: www.biorxiv.org/content/10.6... Code: github.com/warpem/miss-... 🧶 Thread:
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Charles Bayly-Jones @charlesbj.bsky.social · 24/04/2026
Well done! Congratulation Jordan! 🍾🎉
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Brian Cook @bcryo.bsky.social · 23/03/2026
1) The Herzik lab is excited to announce our newest preprint in collaboration with the Grotjahn lab! We have developed a surfactant cocktail that seeks to overcome one of the more nefarious problems in #cryoEM, Air-water interface (AWI)-induced damage and preferred orientation (PO).
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Charles Bayly-Jones @charlesbj.bsky.social · 23/03/2026
Sad news coming from our colleagues in the US. A friendly reminder to those who have missed out that we have grad school positions available and we value you! Maybe this is an opportunity to make Melbourne, Australia your new home. Please boost.
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Tatta Bio @tattabio.bsky.social · 05/03/2026
FlashPPI is our new proteome-wide protein-protein interaction prediction model. If you haven't had a chance to try FlashPPI yet, here's what the end-to-end flow looks like in SeqHub:
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Luca Troman @lucatroman.bsky.social · 06/02/2026
🌀 We solved the structure for T. denticola periplasmic flagella! I'm very happy to finally showcase this work. A huge collaborative effort between myself, @bindusmitapaul.bsky.social, @debnathghosal.bsky.social, Jack Kim, @banfieldlab.bsky.social, Eric Reynolds and the Chris Fenno lab. 🦠 Enjoy!
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matt-dejong.bsky.social @matt-dejong.bsky.social · 27/02/2026
To learn more, you can find our new preprint here! 13/13 www.biorxiv.org/content/10.6...
biorxiv.org
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matt-dejong.bsky.social @matt-dejong.bsky.social · 27/02/2026
We developed a single-molecule, multiplexed, microfluidic force spectroscopy (SM3FS) assay that arrays many flow chambers in one FOV. Additional multiplexing enabled library-scale experiments. 4/13
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Zhicheng Cui | 崔志成 @chen3dem.bsky.social · 24/02/2026
At #BPS2026? 🧬 Come talk structural biology & mTORC1 signaling! I'll be at Poster B220 this Tuesday, 2:45–3:45 PM. I’m also building the Cui Lab at CU Anschutz and looking for postdocs/students interested in Cryo-EM and ML. Let's chat! 🧪🏔️ #Biophysics #CryoEM #StructuralBiology
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Charles Bayly-Jones @charlesbj.bsky.social · 23/02/2026
www.nature.com/articles/s41...
nature.com
Laser writing in glass for dense, fast and efficient archival data storage - Nature
An optical archival storage technology based on femtosecond laser direct writing in glass addresses the practical demands of archival storage.
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Philip Romero @philromero.bsky.social · 19/02/2026
Introducing AlphaFast 🚀. AF3 is transformative but too slow for large-scale protein design. My students Ben and Jeonghyeon made it 10-100x faster using GPU-accelerated sequence search. Preprint: www.biorxiv.org/content/10.6...  Code: github.com/RomeroLab/al...
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Cell - a Cell Press journal @cp-cell.bsky.social · 19/02/2026
New issue alert 👉 www.cell.com/cell/current On the cover, McCallum et al. depict a fluorescent micrograph showing a engineered biosensor strain in the mouse colon, illustrating how commensal bacteria can serve as in situ reporters of dynamic gut physiology.
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Charles Bayly-Jones @charlesbj.bsky.social · 18/02/2026
I’ve officially started my lab at Monash University! 🎉 We’re diving into #cellgrowth and #lysosome biology, through the lens of molecular #structure and mechanism. I’m thrilled to say that PhD student scholarships are available—so please share widely and get in touch if you’re interested. 🤩
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Charles Bayly-Jones @charlesbj.bsky.social · 17/02/2026
Tried it. Its awesome. Shame the code isn't available. Webserver only, how long will it last??
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Kevin Zollman @kevinzollman.com · 16/02/2026
I've heard this position articulated by a lot of people, but I think this is hard to make precise. Much of this tracks a problem we already know in science: standards of authorship are not stable and there are many difficult edge cases. Consider these cases...
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cryoEM papers @cryoempapers.bsky.social · 16/02/2026
Physically Grounded Generative Modeling of All-Atom Biomolecular Dynamics www.biorxiv.org/content/10.64898/2026.02.15.705956v1 #cryoEM
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Diego del Alamo @delalamo.xyz · 15/02/2026
Metadynamics meets diffusion-based structure prediction: the same trick that drives enhance sampling of MD trajectories can be adapted and applied as steering terms during generation to sample diverse conformations. Seems obvious in hindsight!
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Edoardo Gianni @edogia.bsky.social · 13/02/2026
How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller? Excited to share our latest work in @science.org on a new small polymerase. 1/n
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
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Nature Structural & Molecular Biology @natsmb.nature.com · 13/02/2026
New online: Structure and function of the yeast amino acid-sensing SEAC–EGOC supercomplex
dlvr.it
Structure and function of the yeast amino acid-sensing SEAC–EGOC supercomplex
Nature Structural & Molecular Biology, Published online: 12 February 2026; doi:10.1038/s41594-026-01746-2Tafur et al. determined the cryo-electron microscopy structure of the SEA complex (GATOR) bound to its substrate, the EGO complex (Ragulator–Rag), and showed that its GAP activity is essential for both rapid inactivation and reactivation of TORC1.
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Michael J. Robertson @biophysicsguy.bsky.social · 27/01/2026
New preprint from the Robertson Lab! We used AF ensemble generation for rigidity filtering with generative design to make cryoEM fiducials, enabling rapid inactive states of four drug targets and a beta2 extracellular fiducial to study GPCR activation! www.biorxiv.org/content/10.6...
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Nature @nature.com · 21/01/2026
Nature research paper: Construction of complex and diverse DNA sequences using DNA three-way junctions go.nature.com/4qu2ExZ
go.nature.com
Construction of complex and diverse DNA sequences using DNA three-way junctions - Nature
Sidewinder enables high-fidelity DNA assembly by separating the information that guides assembly from the final assembled sequence.
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Charles Bayly-Jones @charlesbj.bsky.social · 17/01/2026
Not just biomedicine! Chemistry, physics, computer science, climate? Both ARC and NHMRC massively under funded. Success rates abysmal. Skeptical of claim re budget increase by 250%? Aus R&D expenditure (%GDP) is stagnant, significantly below OECD average. Inflation. Rising costs. USA exit. ?!?
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Charles Bayly-Jones @charlesbj.bsky.social · 13/01/2026
First steps toward magnetic-elution affinity chromatographies, easily pattern surfaces, microfluidics, also probably cheaper than mag beads for robotic pipelines. Keen to see the data!
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Dr Michelle L Halls @drmlhalls.bsky.social · 13/01/2026
The latest research from our team is out in Cell @cp-cell.bsky.social! We used #cryo-EM, #imaging, #BRET, and #biosensors targeted to the lysosome to understand how the KICSTOR-GATOR1 complex turns off #mTORC1 in response to low levels of amino acids.
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Andrew Ellisdon @drellisdon.bsky.social · 09/01/2026
Excited to share our latest research, out today in Cell (@cellpress.bsky.social) Using cryo-EM and cell-based studies, we reveal how large nutrient sensing protein complexes form at the lysosomal membrane to turn off mTORC1 and halt anabolic signalling. Read the paper here: doi.org/10.1016/j.ce...
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Dr Monique Ryan @mon4kooyong.bsky.social · 03/01/2026
The government can’t claim that medical research is a priority while failing to treat it as one. Nine in 10 leading researchers in Australia are missing out on government support for world‑class proposals, leaving exceptional talent uncertain about their future.
theage.com.au
Most researchers miss out on innovation grants while medical fund sits on $25b
Nine in 10 Australian researchers had their “ideas grant” applications rejected last year, even as Australia’s medical investment fund sits on $5 billion more than it was designed to hold.
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Cell - a Cell Press journal @cp-cell.bsky.social · 08/01/2026
Now online! Structure of the lysosomal KICSTOR-GATOR1-SAMTOR nutrient-sensing supercomplex
dlvr.it
Structure of the lysosomal KICSTOR-GATOR1-SAMTOR nutrient-sensing supercomplex
This study reveals how KICSTOR and GATOR1 assemble into a crescent-shaped lysosomal complex that regulates mTORC1 during amino acid starvation and how SAMTOR binds KICSTOR in an S-adenosylmethionine-incompatible conformation to couple methionine sensing to mTORC1 regulation.
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Charles Bayly-Jones @charlesbj.bsky.social · 08/01/2026
Here's an overview of the structure... doi.org/10.1016/j.ce...
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Charles Bayly-Jones @charlesbj.bsky.social · 08/01/2026
Thrilled to share our latest work @luptoncj.bsky.social @drellisdon.bsky.social @drmlhalls.bsky.social. Structure of the lysosomal KICSTOR-GATOR1-SAMTOR nutrient-sensing supercomplex. 🧪🔬#cryoEM Now online @cellpress.bsky.social. doi.org/10.1016/j.ce...
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Charles Bayly-Jones @charlesbj.bsky.social · 28/12/2025
Crowd sourcing request!! I'm trialling some dev software and I'm looking for nice public tomograms to use as case studies. Downloading all tomos and looking for good examples is tedious. Can anyone recommend specific tomos from EMPIAR/CZI that have multiple STA targets? #teamtomo #cryoEM
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Hanjin Liu @liu-hanjin.bsky.social · 23/12/2025
CryoEM folks, If you want to handle huge STAR file efficiently in Python, please try starfile-rs! github.com/hanjinliu/star… Reading a motion data of a particle from a 15 MB file is just like this ↓🤩
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Charles Bayly-Jones @charlesbj.bsky.social · 18/12/2025
Interesting discussion. Pros/cons of PDFs vs digital objects. As our standards increase, the burden of evidence will so too. These monster figs are a consequence. Why are we still held to prehistoric paper press page limits? Why not have as many ext. data figs as necessary? A PDF can be 100 pgs.
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cryoEM papers @cryoempapers.bsky.social · 12/12/2025
IsoNet2 determines cellular structures at submolecular resolution without averaging www.biorxiv.org/content/10.64898/2025.12.09.693325v1 #cryoEM
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