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Aakash Grover

@aakashg20.bsky.social
862 followers 729 following 34 posts

Grad Student - University of Pittsburgh Arndt Lab - www.karenarndtlab.com UG - Shiv Nadar University Epigenetics, Gene Expression, & Evolution (He/Him/His) 🏳️‍🌈

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Reposted by Aakash Grover
FragileNucleosome @fnucleosome.bsky.social · 02/10/2026
📢🧬Join us on Wednesday, Oct 7th for the next #FragileNucleosome seminar to hear exciting chromatin stories from Moonmoon and Paul! If you still haven't registered for our series: us06web.zoom.us/webinar/regi...
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Svetlana Dodonova @dodonova-sveta.bsky.social · 30/09/2026
New preprint from Dodonova lab 🔔! Capturing multiple states by cryo-EM❄️, we show for the first time how archaeal RNA Polymerase engages a nucleosome and forms direct contacts with histones! 🧬 Great work by Gabriele & a fantastic collaboration with Dina Grohmann! 🧵 www.biorxiv.org/content/10.6...
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bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 30/09/2026
Structural basis of nucleosome remodeling by archaeal RNA polymerase during transcription elongation www.biorxiv.org/content/10.64898/20…
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The EMBO Journal @embojournal.org · 18/09/2026
What defines limits & regulation of epigenetic inheritance? Florian Steiner et al show altered genomic distribution of histone modification H3K27me3 can be transmitted across C. elegans generations through successive SET-32 & MES-4 action that alters its deposition link.springer.com/article/10.1...
link.springer.com
Transgenerational inheritance of altered H3K27me3 in wild-type Caenorhabditis elegans - The EMBO Journal
Epigenetic inheritance provides mutation-free mechanisms for phenotypic adaptation, including modifications to DNA or DNA-associated proteins that create patterns of heritable gene regulation. However...
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FragileNucleosome @fnucleosome.bsky.social · 17/09/2026
📢🧬join us on Wednesday, Sept 23rd for the next #FNucleosome seminar to hear exciting chromatin/transcription stories from Oscar Campos and @giacomodonatijd.bsky.social! Register here: us06web.zoom.us/webinar/regi...
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Arnaud Krebs @arnaudkr.bsky.social · 14/09/2026
your starter pack for Single Molecule Genomics! Why you should do it (or not) - How you should do it. Collective effort with @vram142.bsky.social @stirlingchurchman.bsky.social @naltemose.bsky.social A Stergachis M Stadler W Greenleaf @embl.org rdcu.be/PmzSEV529GRa
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Seychelle Vos @voslab.org · 08/09/2026
⚡Preprint alert⚡ So proud of @amohamed98.bsky.social! Abdallah determined the cryo-EM structure of BRD4 bound to the kinase P-TEFb, defining the molecular basis of this key transcription interaction — and revealing that BRD4 and AFF4 binding are mutually exclusive to P-TEFb. Lots more inside 👇
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Alessandro Dulja @alessandrodulja.bsky.social · 07/09/2026
🚨Happy to share that the first part of my PhD is out on @cp-devcell.bsky.social! This has been an exciting project in the lab of @eileen-furlong.bsky.social @embl.org, studying the regulation of Pol II pausing across embryogenesis and its impact on gene expression dynamics. tinyurl.com/5n88ykk7
tinyurl.com
Chromatin context shapes SPT5 regulation of promoter-proximal Pol II, fine-tuning gene expression changes during Drosophila embryogenesis
Using rapid SPT5 depletion, Dulja et al. uncover different molecular phenotypes at different embryonic stages. In early embryos, SPT5 depletion shifts Pol II from the pausing site to the +1 nucleosome...
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Piali Sengupta @senguptalab.bsky.social · 03/09/2026
Nothing like hits from a forward genetic screen to send you down multiple rabbit holes from which you may never emerge. But the absolute bestest fun ever!
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FragileNucleosome @fnucleosome.bsky.social · 03/09/2026
🎤 #FragileNucleosome is back next Wednesday! Hope you enjoyed the summer!Join us next 📅Wednesday to hear about 🧬fascinating research from @mpalamin.bsky.social from Krebs lab and @robertovn.bsky.social from Vos lab. To register if you haven't before: us06web.zoom.us/webinar/regi...
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tnyfrontrow.bsky.social @tnyfrontrow.bsky.social · 01/09/2026
Essential streaming: the new restoration of Satyajit Ray's impulsive, empathetic, romantic, yet ferociously critical melodrama Days and Nights in the Forest is now on the @criterionchannl.bsky.social : www.newyorker.com/culture/the-...
newyorker.com
“Days and Nights in the Forest” Emerges from the Shadows
This passionate melodrama by Satyajit Ray, about four middle-class men on a heedless spree in a rural village, is a teeming panorama of social divisions and inequities.
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Nathan Clark @nclark.bsky.social · 01/09/2026
Dr. Hopson’s application of Evolutionary Rate Covariation in malaria discovers functional clusters related to virulence and a new invasion gene!
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Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵
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Aakash Grover @aakashg20.bsky.social · 25/08/2026
ChimeraX is just the best thing ever!
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Aakash Grover @aakashg20.bsky.social · 23/08/2026
Ted Lasso is so good!
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Reposted by Aakash Grover
MichaelMcMurray lab @mcmurraylab.bsky.social · 14/08/2026
A reminder to budding yeast researchers: if you use the "GAPDH" promoter to drive constitutive expression, please be careful about how you describe this. The gene GPD1 encodes glycerol-3-phosphate dehydrogenase, not Glyceraldehyde-3-phosphate dehydrogenase. The TDH3 promoter is probably what you use
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Richard Sever @richardsever.bsky.social · 13/08/2026
bioRxiv/medRxiv have been dealing with endless bot attacks recently (plus usual DDOS stuff, etc). Tricky to address without impacting genuine users - many of you affected. Apologies. We're working with our hosting service on solutions & think we're getting there [he shouts in his Red Queen costume].
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Chhabi Govind, PhD @govindlab.bsky.social · 05/08/2026
A new preprint from our lab: www.biorxiv.org/content/10.6...
biorxiv.org
Genome-wide analysis reveals the importance of histone acetyltransferase Esa1 in transcriptional regulation during nitrogen starvation
Macroautophagy/autophagy is a process that degrades intracellular components and is strongly triggered by nitrogen starvation (-N). Some ATG (autophagy related) genes are activated at the transcriptio...
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Aakash Grover @aakashg20.bsky.social · 08/08/2026
Starting to see Lantern flies again 🤦‍♂️
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PLOS Biology @plosbiology.org · 05/08/2026
Graphing and statistically analyzing data is challenging without coding expertise. This Community Page by @avishenoy.bsky.social introduces grafify online, a free, browser app for generating publication-quality graphs and performing statistical tests and comparisons. 🧪 #AcademicSky plos.io/3RpUg6E
Types of graphs and color schemes available in grafify online.
A. Examples of graphs that can be plotted with grafify online. Box and whiskers and violin plots show a line at the median with a box representing the interquartile range (IQR) and whiskers that show 1.5× IQR. Bar graphs and point and error-bar plots show the mean, and the dispersion can be shown as standard deviation (default), standard error of mean, or 95% confidence intervals. Before–after plots show matched data. Numeric XY graphs have numeric variables on both and X- and Y-axes and require a grouping variable that is either categorical (Numeric XY 1) or numeric (Numeric XY 2). B. Categorical (left) and numeric (right) color palettes that are accessible to colorblind individuals
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Aakash Grover @aakashg20.bsky.social · 04/08/2026
Awesome study on chromatin evolution🤩
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Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 02/08/2026
ICYMI: New Online! Regulation of RNA transcript elongation in metazoans and its relevance to disease
dlvr.it
Regulation of RNA transcript elongation in metazoans and its relevance to disease
Nature Reviews Molecular Cell Biology, Published online: 30 July 2026; doi:10.1038/s41580-026-01003-wThis Review discusses how transcript elongation by RNA polymerase II is regulated and how obstacles such as nucleosomes are overcome. Also discussed are the roles of transcription surveillance machineries, which ensure mRNA integrity and suppress spurious transcription, and how elongation defects contribute to diseases.
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Alexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 30/07/2026
Check out this program! There's even a session dedicated to the Mediator complex 😍 [Meeting] Transcriptional regulation by chromatin and RNA polymerase Oct. 29 – Nov. 2, 2026 Alexandria, Virginia @asbmb.bsky.social www.asbmb.org/meetings-eve...
asbmb.org
Transcriptional regulation by chromatin and RNA polymerase
Oct. 29 – Nov. 2, 2026 | Alexandria, VA
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Vaughn Cooper @vscooper.micropopbio.org · 26/07/2026
In 2014, Jason Rosch and I met at a GRC in Tuscany and sketched an idea on a cocktail napkin: what if we evolved S.pneumo in mice, treated them with antibiotics, varied their immune systems and watched what won? 11 years and a huge team effort later, it's out in @cp-cellhostmicrobe.bsky.social 🧵
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Sarah Hainer @hainerlab.bsky.social · 13/07/2026
The talented @isa-ozdemir.bsky.social wrote a review of CHD remodelers, discussing all 9 family members and their roles in ES cells and early development. dx.doi.org/10.1002/bies... 1/2
dx.doi.org
Molecular Acrobats: How CHD Remodelers Shape the Genetic Playground to License Cell Identity
In eukaryotes, DNA is not a naked repository of genetic information but is tightly wound around histone octamers to form nucleosomes. While this packaging solves the spatial problem of fitting 2 mete...
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Maxim Greenberg @maxvcg.bsky.social · 03/02/2026
During germline epigenetic reprogramming, Polycomb must be restricted in the gametes to ensure proper genome regulation in the fertilized embryo. 2 must-read papers assess what happens when Ezhip (Polycomb antagonist) is lost. They come to highly similar conclusions and should be read in tandem 1/4
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bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 08/07/2026
Molecular determinants of Hrp1-RNA recognition underlying yeast RNA Polymerase II transcription attenuation www.biorxiv.org/content/10.64898/20…
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Nature Structural & Molecular Biology @natsmb.nature.com · 04/07/2026
ICYMI: New online: An asymmetric non-canonical nucleosome shapes the directionality of transcription outcomes
dlvr.it
An asymmetric non-canonical nucleosome shapes the directionality of transcription outcomes
Nature Structural & Molecular Biology, Published online: 03 July 2026; doi:10.1038/s41594-026-01836-1By integrating cryo-electron microscopy structural analysis with biochemical analysis, we demonstrate that an asymmetric non-canonical nucleosome, namely the overlapping dinucleosome, imposes directionality on transcription by RNA polymerase II. This finding demonstrates how non-canonical nucleosomes in the genome might regulate transcription.
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bioRxivpreprint @biorxivpreprint.bsky.social · 04/07/2026
Emergence of histone-based chromatin complexity in Asgard archaea www.biorxiv.org/content/10.64898/20…
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Craig Kaplan @triggerloop.bsky.social · 29/06/2026
The Kaplan Lab at the University of Pittsburgh has received funds to recruit a postdoctoral fellow to establish a multiplexed assay of variant effect for a disease gene. This relates to our studies on RNA Polymerase II. This project requires experience with human cell lines and genomics 1/
cfopitt.taleo.net
Post Doctoral Associate
Click the link provided to see the complete job description.
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Karolin Luger @nucleosomepolice.bsky.social · 25/06/2026
New PARP1 preprintfrom the lab, by Alex Fiorenza and our amazing undergrad Mahika Anand. PARP1 functions in DNA repair, but what about its second gig as a chromatin architectural protein? How does it stay enzymatically quiet? Read all about it here. www.biorxiv.org/content/10.6...
biorxiv.org
PARP1 Exhibits an Enzymatically Inactive Chromatin Binding Mode
Poly (ADP-ribose) Polymerase 1 (PARP1) is an abundant nuclear enzyme that dynamically engages chromatin in diverse cellular scenarios. In the context of DNA repair, PARP1 becomes enzymatically activat...
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Svetlana Dodonova @dodonova-sveta.bsky.social · 19/06/2026
Excited to share our new preprint! 🧬❄️ by brilliant @mdreimann.bsky.social and great collaborators! Using cryo-ET&EM, we reveal archaeal chromatin in a near-native state: variable-beads-on-a-string fibers shaped by growth phase and histone composition #ArchaeaSky www.biorxiv.org/content/10.6...
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Anders Sejr Hansen @andersshansen.bsky.social · 22/06/2026
(1/n) Very excited to share tri-lab collab (Mirny & Zechner) led by Harvey, Henrik & Jack: Q: How do enhancers & promoters interact in space (contact vs. action-at-a-distance) and time (stable vs. transient)? A: Transient E-P contact (~25-42 nm lasting ~10-20 sec): www.biorxiv.org/content/10.6...
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PLOS Biology @plosbiology.org · 16/06/2026
How has #evolution shaped Transcription Elongation Factors, important for #GeneExpression? This study by Alex Francette, Karen Arndt &co traces ten core factors to the last eukaryotic common ancestor, and shows they display both conserved and lineage-specific domains. 🧪#AcademicSky plos.io/4eaCUTJ
The authors' proposed model reflecting the acquisition and putative loss of transcription elongation factor domains across clades in the Tree of Life
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Aakash Grover @aakashg20.bsky.social · 16/06/2026
Check out this thread on our most recent work now out in PLOS Biology. Here, we explore the evolution of some of our favorite transcription elongation factors! This was a close collaboration with @transcribe-or-die.bsky.social , my former bay mate in the Arndt lab.
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Sally G Pasion @sgpombe.bsky.social · 14/06/2026
Congratulations to #KarenArndt #UniversityOfPittsburgh presenting the #Yeast26 Lee Hartwell lecture and sharing the journey from #RTF1 to the #PafComplex (#Paf1C) (leaving me scrambling to learn about #AnchorAway). @genetics-gsa.bsky.social
Woman with short brown hair wearing black sleeveless dress is standing at a podium to the right of a giant white slide. The top left corner has an image labeled Dr. Leland Hartwell, and the image shows a black and white headshot of a man with grey/white hair wearing a white shirt and black tie. The middle of the slide shows a yellow box with text:
From the 2001 Nobel Lecture by Leland Hartwell:
“My research career has been motivated by a desire to understand cancer. Each time I have identified an intriguing aspect of the cancer problem, I have found that it could be approached more effectively in the simpler eukaryotic cell Saccharomyces cerevisiae, than the human cell. Each time the yeast cell has revealed some of its secrets.”
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Aakash Grover @aakashg20.bsky.social · 14/06/2026
Let’s go! #Yeast26
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The bumbling biochemist (Bri Bibel) @bumblingbiochemist.bsky.social · 12/06/2026
Troubleshooting affinity tag protein purification problems such as tagged proteins not binding youtu.be/CHdxwzE0KUs
youtu.be
Troubleshooting affinity tag protein purification problems such as tagged proteins not binding
YouTube video by the bumbling biochemist
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Craig Kaplan @triggerloop.bsky.social · 11/06/2026
Guys - this is not good
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Craig Kaplan @triggerloop.bsky.social · 03/06/2026
Ok this is too complicated for me to summarize but very very cool from Roddy O’Sullivan and Yael Nechemia-Arbely from the Hillman Cancer Center at Pitt. ALT cancers can get centromeric insertions at telomeres that are inportant for telomere integrity in ALT!! www.nature.com/articles/s41...
nature.com
Centromeric footprints preserve telomere integrity in ALT cancers - Nature
Centromeric DNA repeat insertions and CENP-A chromatin assembly are identified as genomic signatures that preserve telomere integrity in ALT cancer cells.
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FragileNucleosome @fnucleosome.bsky.social · 01/06/2026
🧬🧬🧬 Join us this Wednesday, June 3rd for exciting talks from three early career chromatin/transcription researchers: Mark Geisler, @jcornwallscoones.bsky.social, and @sidujain.bsky.social! register here: us06web.zoom.us/webinar/regi...
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cryoEM papers @cryoempapers.bsky.social · 30/05/2026
Molecular mechanisms of the MLL4 complex in H3K4 methylation and p53-dependent transcription activation pubmed.ncbi.nlm.nih.gov/42214331/ #cryoEM
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Seychelle Vos @voslab.org · 29/05/2026
⚡New preprint from the lab⚡: A key early checkpoint in gene expression is promoter proximal pausing of RNA polymerase II. For over 20 years, we as field have not been able to recreate pausing under realistic cellular conditions. @robertovn.bsky.social shows that ELOF1 is the missing piece.
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The bumbling biochemist (Bri Bibel) @bumblingbiochemist.bsky.social · 22/05/2026
Huge thanks to the NCC @getacrystal.bsky.social for providing affordable screening to expand crystallography access to PUIs (Primarily Undergraduate Institutions)! My students are learning so much and it's so great showing them a bit of my past life! youtu.be/F5HtZ2-3d8c
youtu.be
X-ray crystallography overview
YouTube video by the bumbling biochemist
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Reese Richardson @reeserichardson.bsky.social · 21/05/2026
@johanduchene.bsky.social @sholtodavid.bsky.social Spent the last hour looking, found ten more apparently manipulated Western blots in Thermo Fisher's antibody verification data (across eight different catalogued products). Thread below. www.thermofisher.com/antibody/pro...
Apparent manipulation in the antibody verification data in Thermo Fisher's online catalog
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Karolin Luger @nucleosomepolice.bsky.social · 18/05/2026
Out today - structure of the human HIRA histone chaperone complex bound to nucleosomes. Ever wondered how nucleosomes are assembled in the wake of transcription? It takes a 'hulk of a protein complex'. Work by the amazing Wei Tian weetian558.bsky.social. www.biorxiv.org/content/10.6... 🧵
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Nucleic Acids Research @narjournal.bsky.social · 15/05/2026
⭐ #NARBreakthrough! ⭐ New #cryo-EM study reveals how #transcription factor IWS1 promotes #RNApolII #elongation. Its C-terminus contains #modularmotifs that bind elongation components, stabilizing the complex. IWS1 also competes with #RECQL5 for Pol II binding. 📖 Read here: doi.org/10.1093/nar/...
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Craig Kaplan @triggerloop.bsky.social · 15/05/2026
First, I would like to discuss Pratik Basnet’s study. Pratik has just defended his thesis and has some very cool stuff to come out in future, but this nice work is the focus today /7 bsky.app/profile/gene...
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Craig Kaplan @triggerloop.bsky.social · 15/05/2026
We are so pleased to also have Payal Arora’s main thesis work in GENETICS @genetics-gsa.bsky.social /1 bsky.app/profile/gene...
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Andrew Savinov @biosavinov.bsky.social · 13/05/2026
Interested in genetically encodable inhibitors of your favorite biomolecular condensate? Excited to announce our latest work, w/ Jibin Sadasivan, Gene-Wei Li, & Lindsay Case, on protein fragments as generalizable regulators of phase separation. (1/n) www.biorxiv.org/content/10.6...
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