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Wilson Lab

@wilsonlab.bsky.social
600 followers 131 following 42 posts

Ribosomes & Translation Regulation; Antibiotics & Resistance Mechanisms; Structural Biology & Cryo-EM; University of Hamburg.

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Karousis Lab @karousislab.bsky.social · 24/09/2026
We report a human cell-free translation screen that identified NT-2, a Fusarium mycotoxin that blocks human ribosomes. The surprise: NT-2 does binds the ribosome and pushes them into a dormant state. www.nature.com/articles/s42...
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Structura Biotechnology @structurabio.bsky.social · 23/09/2026
🔎 A classic #cryoEM particle curation conundrum: 2D or 3D classification? "Decoy Classification" using Heterogeneous Refinement in #CryoSPARC curates particles directly in 3D, helping remove junk particles while preserving valuable views. Read more in the CryoSPARC Blog 👉 bit.ly/3SXfwS0
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Beckmann Lab @beckmannlab.bsky.social · 23/09/2026
Frank Nijpels from VitriMatics paid us a visit today. Not only did he repair our broken VitroBot Mark IV and returned it in person, he also brought some extremely cool tools ❄️ for reliable cryo-EM grid freezing 🔬. Check out the VitriClip and the SupraBlot at vitrimatics.com. #cryoEM #cryoET
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Elodie Carmen Leroy @ecleroy.bsky.social · 21/09/2026
How can a single antibiotic halt translation across all domains of life? 🧬 Our new study in Nucleic Acids Research reveals how Sparsomycin traps active ribosomes through a conserved mechanism. academic.oup.com/nar/article/... #Ribosome #Translation #StructuralBiology #Antibiotics #RNA #iTPseq
Graphical representation of the T. thermophilus 70S ribosome showing the 30S and 50S subunits, mRNA, and P-site tRNA. Sparsomycin (yellow) binds in the peptidyl transferase center at the interface between the A and P sites. The enlarged view shows sparsomycin occupying the A-site cleft adjacent to the P-site fMet-tRNA, closely contacting its 3′ CCA end (C74, C75 and A76) and the attached fMet.
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Max Planck Institute of Biochemistry @mpibiochem.bsky.social · 18/09/2026
Our director, F.-Ulrich Hartl, is receiving this year’s “Keio Medical Science Prize”. We extend our warmest congratulations to him and to the other awardee, Seishi Ogawa. ❕Press release: www.biochem.mpg.de/f-ulrich-har...
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Digital Brain @yourdigitalbrain.bsky.social · 15/09/2026
An international team of crystallographers determined the structure of a protein at 0.43 Ångstrom resolution, the highest ever achieved for a biological macromolecule.
sinapti.ca
X-ray crystallography achieves the highest resolution ever reached in a protein - Sinaptica
An international team of crystallographers determined the structure of a protein at 0.43 Ångstrom resolution, the highest ever achieved for a biological macromo
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Reposted by Wilson Lab
Beckmann Lab @beckmannlab.bsky.social · 14/09/2026
New preprint! 👀RNAse activity has to be tightly regulated.✂️🧬Here, we present the dynamic architecture of the conserved Rixosome complex – a major player in ribosome maturation and heterochromatin maintenance. Our results give insights into its mode of activation.👇 #cryoEM #Ribosome #RNA
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Beckmann Lab @beckmannlab.bsky.social · 10/09/2026
📰Happy to share our preprint.🥳Here we investigate🔬, the essential role of the conserved RNA helicase Drs1. We show that its engagement and activity license timely incorporation of 25S rRNA domain III into maturing nucleolar pre-60S subunits.👇 doi.org/10.64898/2026.09.05.749353 #cryoEM #ribosome #RNA
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Wilson Lab @wilsonlab.bsky.social · 03/09/2026
www.nature.com/articles/s41...
nature.com
Rewiring the ribosome to translate proteins encoded in its own RNA - Nature
Bacterial ribosomes can synthesize proteins encoded within their own RNA.
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Reposted by Wilson Lab
Beckmann Lab @beckmannlab.bsky.social · 01/09/2026
Preprint alert: a helicase watching the ribosomal A-site 👀🧬 Our cryo-EM structure reveals how yeast Dhx29 senses mRNA hairpins forming in the A-site and positions its helicase at the mRNA entry channel to resolve them during translation elongation: doi.org/10.64898/202... #cryoEM #ribosome #RNA
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Weizmann Institute of Science @weizmann.ac.il · 31/08/2026
We, the Weizmann Institute of Science community, deeply mourn the passing of Prof. Ada Yonath - Nobel Laureate and a Model of Scientific Perseverance. May her memory be a blessing. bit.ly/ada-yonath-eng
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Itai Yanai @itaiyanai.bsky.social · 31/08/2026
Nobel Prize winner Ada Yonath sadly passed away today. She was a legend for her pioneering work on the structure of ribosomes.
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Stella Hurtley @smhsci.bsky.social · 28/08/2026
Out now in @science.org Nonviral delivery of chemically modified tRNA rescues nonsense mutations in cystic fibrosis | Science www.science.org/doi/10.1126/...
science.org
Nonviral delivery of chemically modified tRNA rescues nonsense mutations in cystic fibrosis
Suppressor transfer RNAs (sup-tRNAs) can rescue disease-causing nonsense mutations by promoting readthrough of premature termination codons (PTCs). Their clinical translation is limited by suboptimal ...
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Fusion Conferences @fusionconf.bsky.social · 27/08/2026
Our speaker line-up is almost complete for #TCCO, do you wish to be a part of it? There are several presentation opportunities available at this meeting, send your abstract to amy@fusion-conferences.com before 19 November to be considered. Sign up for updates here - bit.ly/4yAFomu
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Fadel Fakih @fakih98.bsky.social · 28/08/2026
Nonviral delivery of chemically modified tRNA rescues nonsense mutations in cystic fibrosis www.science.org/doi/10.1126/...
science.org
Nonviral delivery of chemically modified tRNA rescues nonsense mutations in cystic fibrosis
Suppressor transfer RNAs (sup-tRNAs) can rescue disease-causing nonsense mutations by promoting readthrough of premature termination codons (PTCs). Their clinical translation is limited by suboptimal ...
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Reposted by Wilson Lab
Jamie Cate @jhdcate.bsky.social · 27/08/2026
And work from the labs of Nicolas Leulliot and Alexandre Smirnov here. 6/ www.biorxiv.org/content/10.6...
biorxiv.org
Universally conserved isoasparylation sustains ribosome biogenesis and function
All living beings use ribosomes to synthesize proteins from α-amino acids. Inherited from our common ancestor, a few universally conserved ribosome biogenesis steps, introducing essential ribosomal RN...
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Reposted by Wilson Lab
Jamie Cate @jhdcate.bsky.social · 27/08/2026
Congrats to the authors of the two teams who discovered these enzymes! Ours here. 5/ www.biorxiv.org/content/10.6...
biorxiv.org
Enzymatic formation of a conserved isoaspartate in ribosomal protein uS11
Isoaspartate (isoAsp) formation is typically viewed as a "molecular clock" through nonenzymatic degradation of aspartate or asparagine during protein aging. Here we report a nearly universal enzymatic...
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Chris H. Hill @chillzaa.bsky.social · 24/08/2026
Thrilled to share that our paper describing protein-dependent frameshifting is now out in Molecular Cell @cellpress.bsky.social. Huge congratulations to @jemmabetts.bsky.social for publishing the first research paper from her PhD 🧬🧪🥳 www.sciencedirect.com/science/arti... 1/8
sciencedirect.com
A protein-dependent riboswitch activates ribosomal frameshifting in cardioviruses
Programmed −1 ribosomal frameshifting (PRF) is a translational control mechanism used by RNA viruses to regulate the relative abundance of proteins en…
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Reposted by Wilson Lab
Ivana Bukvin @ivanabukvin.bsky.social · 27/07/2026
Very happy to share a new preprint characterising the unfolded state of a folding-competent domain at the cusp of folding initiation on the ribosome. Co-led by @julianstreit.bsky.social from my PhD in John Christodoulou's lab. Many thanks to all the co-authors!
biorxiv.org
The initiation of de novo protein folding on the ribosome
How the earliest structure within the unfolded state is formed during biosynthesis on the ribosome and whether it has any consequences for downstream folding remain open questions. Here, we combine 15...
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Reposted by Wilson Lab
Florent Waltz @florentwaltz.bsky.social · 27/07/2026
This story is now published in @natplants.nature.com ! 🎉🎩 Check out the final article here: nature.com/articles/s41477-026-02361-1 Very similar to the original bioRxiv preprint, with the addition of some cool polysome analysis (in the supplementals)! Thanks and congrats to everyone involved! 🙏
nature.com
Chloroplast-encoded small subunit extensions reshape the Chlamydomonas chlororibosome - Nature Plants
Using in situ cryo-electron tomography, researchers found a unique ‘arm’ domain on the small subunit of Chlamydomonas chlororibosomes. This discovery suggests that chlororibosome structure is more evo...
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Nature Plants @natplants.nature.com · 28/07/2026
New OA Article: "Chloroplast-encoded small subunit extensions reshape the Chlamydomonas chlororibosome" rdcu.be/fwoSj In situ cryo-electron tomography reveals a unique ‘arm’ domain on the small subunit of Chlamydomonas chlororibosomes. #PlantScience
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Evelina Tutucci @anilevetu.bsky.social · 28/07/2026
A new article from Jeff Coller's lab. www.cell.com/molecular-ce...
cell.com
Nascent chain folding status modulates ribosome dynamics and mRNA stability through the ribosome-associated chaperone Zuo1
Chang et al. show that co-translational protein misfolding feeds back to ribosomes, slowing translation elongation and triggering mRNA decay. The ribosome-associated chaperone Zuo1 mediates this respo...
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Meg Mindlin @invertebabe.bsky.social · 29/07/2026
New research just dropped today that makes octopuses even weirder than they already are… let me explain🧵🧪🐙🐡🦑
OCTOPUSES JUST GOT WEIRDER
Featuring an illustration of a two spot octopus with a blue and purple ribosome behind it
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 29/07/2026
journals.asm.org/doi/10.1128/... comprehensive review of bacterial RNA modifications 🦠
journals.asm.org
Compendium of RNA modifications for bacterial stress adaptation | Microbiology and Molecular Biology Reviews
SUMMARYRNA modifications in the tRNA, rRNA, and mRNA constitute a widespread layer of post-transcriptional gene regulation, commonly known as the epitranscriptome. In bacteria, tRNA and rRNA modifications are well documented and play essential roles in tRNA folding, rRNA maturation, translation, and peptidyl transfer. Although mRNA modifications have been extensively characterized in eukaryotes, their functional implications for mRNA fate in prokaryotes remain uncertain, and their identities and locations are the subject of an emerging field of research. Importantly, RNA modification is a dynamic process, and variation in the presence and abundance of these modifications has significant consequences for bacterial physiology. Here, we discuss current knowledge of modified RNA nucleotides in bacteria, with a particular focus on their roles in bacterial adaptation to environmental stress.
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Cees Dekker @ceesdekker.bsky.social · 22/07/2026
We built a a self-dividing synthetic cell ! Check out this #CDlab preprint on BioRxiv: www.biorxiv.org/content/10.6... Great work by 1st author Charu Sharma who encoded dynaminA in a genome and expressed that in liposomes that then divide into daughter cells! Collaboration with Koenderink lab!
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Green Lab JHMI @greenlab.bsky.social · 24/07/2026
Wait, what?! This isn’t about ribosomes? Check out our new work where we find that a #Legionella effector thought to target host translation instead targets metabolism by modifying a host glycolytic metabolite. Led by @drjoshblack.bsky.social www.cell.com/molecular-ce...
cell.com
The Legionella pneumophila effector SidL is an adenylyltransferase that modifies the glycolytic intermediate 3-phosphoglycerate
Black et al. identify the L. pneumophila effector SidL as an adenylyltransferase that targets host glycolysis. SidL covalently modifies the glycolytic intermediate 3-phosphoglycerate (3PG) with AMP, g...
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Kurianlab @kurianlab.bsky.social · 10/07/2026
How cool!!
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 10/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Mechanism of nucleolytic degradation of human ribosomes
Stresses like starvation trigger degradation of mature 40S ribosomes, requiring the coordinated breakdown of large and stable RNA-protein complexes. The atypical kinase RIOK3 orchestrates degradation ...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 10/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Conformational diversity of collided ribosomes determines stress signaling
Translating ribosomes are stalled by amino acid starvation and by chemical damage of the mRNA template, leading to ribosome collisions. These collisions serve as signaling platforms that promote quali...
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Di Jiang @dijiang319.bsky.social · 09/07/2026
In print today @science.org Laser phase plate improves structure determination of small proteins by cryo-EM | Science www.science.org/doi/10.1126/...
science.org
Laser phase plate improves structure determination of small proteins by cryo-EM
Phase plates can, in principle, overcome the poor image contrast in cryo–electron microscopy (cryo-EM) and the resulting limits on the structural reconstruction of small proteins. However, previous de...
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Osterman Ilya @ostermanilya.bsky.social · 09/07/2026
Excited to share that our Metis story is now published in Science! 🎉 Bacteria can sense phage-induced degradation of their genome and activate immunity. Many thanks to everyone who contributed to this work. 📄 www.science.org/doi/10.1126/... More details in my earlier thread 🧵⬇️
science.org
Bacteria sense virus-induced genome degradation via methylated mononucleotides
Phages often degrade the genome of their bacterial host to individual nucleotides. Here we describe Metis, a bacterial defense system that directly senses phage-mediated host genome degradation. Metis...
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Misha Kudryashev @mishakudryashev.bsky.social · 05/07/2026
New paper from the group! We were curious if the longevity of naked mole-rats has anything to do with their protein synthesis machinery. It was shown that the ribosomal 28S is split into 3 subunits Our cryo-EM study of the NMR ribosomes by @mehmetguel.bsky.social etal www.nature.com/articles/s41...
nature.com
Cryo-EM structure of the naked mole-rat ribosome reveals a stabilized split 28S rRNA - Nature Communications
The long-living rodent naked mole-rat has a distinct break in its 28S ribosomal RNA. Here, the authors present cryo-EM structures showing this cleavage is stabilized by surrounding ribosomal proteins,...
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EMBL @embl.org · 06/07/2026
Congratulations, Matthias Hentze! The EMBL Director has been awarded the German Order of Merit for his outstanding achievements in life science research and in building scientific structures across Germany and beyond. www.embl.org/news/awards-...
Matthias Hentze after receiving the Bundesverdienstkreuz at a ceremony on 2 July 2026. Also pictured are his wife Sabine Hentze, BIAC member and EMBL alumna, and Eckart Würzner, Lord Mayor of Heidelberg, who presented the award. ©Philipp Rothe
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Nature Reviews Microbiology @natrevmicro.nature.com · 26/06/2026
ICYMI: New online! A new antibiotic scaffold hits a new target
dlvr.it
A new antibiotic scaffold hits a new target
Nature Reviews Microbiology, Published online: 19 June 2026; doi:10.1038/s41579-026-01336-5This study describes the discovery of a new antibiotic with a previously unknown mode of action.
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 04/07/2026
Conformational diversity of collided ribosomes determines stress signaling www.biorxiv.org/content/10.6...
biorxiv.org
Conformational diversity of collided ribosomes determines stress signaling
Translating ribosomes are stalled by amino acid starvation and by chemical damage of the mRNA template, leading to ribosome collisions. These collisions serve as signaling platforms that promote quali...
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Reposted by Wilson Lab
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 04/07/2026
AMaNITA: an end-to-end workflow for native tRNA nanopore sequencing data analysis www.biorxiv.org/content/10.6...
biorxiv.org
AMaNITA: an end-to-end workflow for native tRNA nanopore sequencing data analysis
Transfer RNA (tRNA) molecules serve as essential adapters during protein translation. While direct RNA sequencing (DRS) via Oxford Nanopore Technologies has emerged as a powerful platform for systemat...
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The EMBO Journal @embojournal.org · 29/06/2026
Substrate-induced assembly and functional mechanism of the membrane protein insertase SecYEG-YidC @kedrov-lab.bsky.social, Roland Beckmann and coworkers link.springer.com/article/10.1...
link.springer.com
Substrate-induced assembly and functional mechanism of the membrane protein insertase SecYEG-YidC - The EMBO Journal
The Sec translocon and the YidC/Oxa1-type insertases universally mediate biogenesis of α-helical membrane proteins, but the molecular basis of their cooperation has remained disputed. Recent discovery...
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Asaf Levy @asaflevylab.bsky.social · 25/06/2026
the 2nd paper in Nature *this month* by Gerard D. Wright! that's the 1st one www.nature.com/articles/s41...
nature.com
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
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Kedrov Lab @ HHU @kedrov-lab.bsky.social · 26/06/2026
We are on air! Congratulations to everyone behind the story ❤️‍🔥 and thanks to @embojournal.org for providing the stage! link.springer.com/article/10.1...
link.springer.com
Substrate-induced assembly and functional mechanism of the membrane protein insertase SecYEG-YidC - The EMBO Journal
The Sec translocon and the YidC/Oxa1-type insertases universally mediate biogenesis of α-helical membrane proteins, but the molecular basis of their cooperation has remained disputed. Recent discovery...
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Ruben Gonzalez @rubenlgonzalez.bsky.social · 24/06/2026
Preprint alert! Using smFRET, we define the only essential ATP hydrolysis step in translation initiation. We show that eIF3 and eIF4B stimulate ATP-hydrolysis-dependent recycling of cap-stalled eIF4F, coupling eIF4F recycling to PIC loading onto an mRNA.🔬 doi.org/10.64898/202...
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Itai Yanai @itaiyanai.bsky.social · 24/06/2026
🔥 Published today, and just in time for summer conferences, here are your guidelines for presenting badly www.nature.com/articles/s41... rdcu.be/fqa92
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BejaLabTechnion @bejalab.bsky.social · 25/06/2026
A Streptomyces megacluster encodes synergistic biotin-targeting antibiotics www.nature.com/articles/s41...
nature.com
A Streptomyces megacluster encodes synergistic biotin-targeting antibiotics - Nature
In Streptomyces spp., a conserved biosynthetic gene megacluster produces an arsenal of distinct antimicrobials that converge on bacterial biotin biosynthesis as a naturally evolved combination therapy...
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Nature @nature.com · 24/06/2026
A 'megacluster' of genes found in a common soil bacterium can produce a range of antibiotics that can act against multi-drug-resistant bacteria go.nature.com/4xObGKf
go.nature.com
Antibiotic cocktail made by soil bacteria can kill superbugs
Four antibiotic compounds produced in Streptomyces bacteria attack multiple parts of an essential metabolic pathway.
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Marc Veldhoen @marcveld.bsky.social · 20/06/2026
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome Very important! A new antibiotic working in a very different way. www.nature.com/artic... 1/5
nature.com
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome
Nature - Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting...
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Phira @phira603.bsky.social · 20/06/2026
This is such a big fucking deal and it's also so cool!!!
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Shicheng Guo @shihcheng.bsky.social · 22/06/2026
Tetracyclines target both the mRNA decoding center in the 30S subunit and the NPET in the 50S subunit of bacterial ribosomes. Unique to doxycycline: it dimerizes! PMID:42156748, Nat Commun 2026, @NatureComms doi.org/10.1038/s41467-026-72788-9 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
doi.org
Dual site targeting of the bacterial 70S ribosome by tetracyclines | Nature Communications
The tetracycline class of antibiotics is widely used for treating bacterial diseases including Lyme disease, anthrax, acne vulgaris, and pneumonia. Using a series of high-resolution cryo-electron microscopy (cryo-EM) structures, we show that tetracyclines can simultaneously target the mRNA decoding center in the 30S subunit and the nascent peptide exit tunnel (NPET) in the 50S subunit of the bacterial ribosome. Among the tested tetracyclines, Doxycycline was distinct in its ability to dimerize and bind the NPET at multiple locations. Structural comparison of Doxycycline, Minocycline, and Sarecycline bound to the Escherichia coli and Cutibacterium acnes 70S ribosome revealed species-specific differences affecting drug interaction and occupancy. Our results reveal a dual site mechanism of action for tetracyclines and provide a structural basis for rational design of narrow spectrum tetracyclines to overcome the rising threat of antibiotic resistance. Tetracyclines are among the most wide
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Tominaga K. (tomiken) @pacyc184.bsky.social · 03/06/2026
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome | Nature Communications www.nature.com/articles/s41467-026-…
nature.com
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termination to halting initiation - revealing a possible host strategy against evolving pathogens.
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Science X / Phys.org @sciencex.bsky.social · 08/06/2026
A narrow ribosome tunnel can act as a checkpoint for bacterial protein production. Some peptides block it directly, while another can trigger a temporary pause under specific stress. doi.org/hb62q9
phys.org
Ribosome tunnel interactions reveal how bacteria can pause protein production
How do bacteria regulate the production of their proteins? Researchers at the University of Hamburg, in collaboration with international partners, have now demonstrated how small protein building blocks, known as peptides, specifically influence bacterial protein production.
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Wilson Lab @wilsonlab.bsky.social · 20/06/2026
www.nature.com/articles/s41...
nature.com
A new antibiotic scaffold hits a new target - Nature Reviews Microbiology
This study describes the discovery of a new antibiotic with a previously unknown mode of action.
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Haaris Ahsan Safdari @haarissafdari.bsky.social · 19/06/2026
🚨 Nature Reviews Microbiology highlights our Nature paper on Manikomycin. A new antibiotic scaffold targeting the ribosomal E-site → new mechanism against drug-resistant bacteria. www.nature.com/articles/s41...
nature.com
A new antibiotic scaffold hits a new target - Nature Reviews Microbiology
This study describes the discovery of a new antibiotic with a previously unknown mode of action.
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