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Asaf Levy

@asaflevylab.bsky.social
1.8K followers 193 following 537 posts

Interested in computational biology, microbial toxins, plant microbiome, and microbial adaptation to different hosts. PI at the Hebrew University of Jerusalem. www.asaflevylab.com Expressing my personal opinions.

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Asaf Levy @asaflevylab.bsky.social · 11h
In October we are starting year 8 (I think) of the virtual microbiology journal club (on Zoom) with fantatstic speakers, as usual. Most talks are about bacteria. If you (PIs, trainees, anyone interested in science) want to be included in the mailing list - shoot me an email. alevy@mail.huji.ac.il
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Asaf Levy @asaflevylab.bsky.social · 29/09/2026
Our new preprint is out. www.biorxiv.org/content/10.6... We applied an XGBoost algorithm with genomic and biochemical features to detect all T6SS effectors in bacterial genomes. Next, we validated 3 novel effectors that serve as antibacterial or anti-euk toxins. One of the effectors, from
biorxiv.org
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Asaf Levy @asaflevylab.bsky.social · 28/09/2026
I found this paper from 2002 about plant-fungal symbiosis which enables both partners to grow above 45C (!) in geothermal soils in Lassen Volcanic and Yellowstone National Parks. As far as I understand te genetic basis of this thermotolerance is still unknown. www.science.org/doi/10.1126/...
science.org
Thermotolerance Generated by Plant/Fungal Symbiosis
All plants studied in natural ecosystems are symbiotic with fungi (1), which obtain nutrients while either positively, negatively, or neutrally affecting host fitness (2). Plant adaptation to selectiv...
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Yasin Dagdas @plantophagy.bsky.social · 24/09/2026
Congrats @mayavoichek.bsky.social @juliusbrennecke.bsky.social & everyone involved!!!
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 20/09/2026
Experimental evolution of root-associated microbial communities www.biorxiv.org/content/10.64898/20…
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Omri Finkel עמרי عُمري @finkel-lab.bsky.social · 17/09/2026
Michal Breker and I started our labs around the same time. Michal studies Chlamydomonas, and I plant microbiota. We joined forces to see how our bugs interact. This led us down a long and winding road, with 3 amazing PhDs and help from many friends. This is the first product of this collaboration.
biorxiv.org
Conserved inhibitory mechanisms of root-associated bacteria towards Arabidopsis thaliana and Chlamydomonas reinhardtii
Soil bacteria colonize plants without causing visible disease, yet many suppress host growth. The prevalence and evolutionary reach of this cryptic inhibition are unknown, because phenotyping hundreds...
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Asaf Levy @asaflevylab.bsky.social · 16/09/2026
Interesting finding by Dianne Newman's group from a few months ago: Elevated antibiotic resistance in soils under drought www.nature.com/articles/s41...
nature.com
Drought drives elevated antibiotic resistance across soils - Nature Microbiology
Drought conditions in soil systems lead to elevated concentrations of natural antibiotics, as well as the enrichment of antibiotic-resistant microorganisms, highlighting a link between climate and the...
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Asaf Levy @asaflevylab.bsky.social · 13/09/2026
Nice experimental evolution work from @cascaleslab.bsky.social on the mechanisms by which T6SS is lost during evolution when present with T6SS-immune competing bacteria, compared to its maintenance when competitors are T6SS susceptible. www.cell.com/current-biol...
cell.com
Experimental evolution reveals genetic routes for adaptive loss of the antibacterial type VI secretion system
Taillefer et al. show that a bacterial type VI secretion system is lost or attenuated during experimental evolution when it provides no competitive advantage but is maintained in the presence of susceptible competitors. T6SS inactivation arises through diverse regulatory and structural mutations, revealing how ecological context shapes antibacterial weapon evolution.
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Asaf Levy @asaflevylab.bsky.social · 12/09/2026
Happy new Jewish year to the Levy lab friends, collaborators, and Reviewers #2 around the world. May the next one will be much more peaceful. (Pic from lab's bday in Palmachim beach 2 days ago).
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Asaf Levy @asaflevylab.bsky.social · 08/09/2026
PISA results are alarming. (Graph from The Economist).
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Asaf Levy @asaflevylab.bsky.social · 06/09/2026
Our friend the @shlezingerlab.bsky.social is hiring! Highly recommended. Working on the fascinating unknown world of mycoviruses. Her 1st postdoc, Marina Campos Rocha, just started her independent academic position.
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Asaf Levy @asaflevylab.bsky.social · 06/09/2026
Cool stuff from the Sorek lab on the functional connection between anti-phage bacterial immunity and plant immunity and the ways to manipulate these. 1st author: Dr. Ohad Roth @soreklab.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Plant pathogens cleave 2′cADPR to suppress TIR immune signaling
Small molecules produced by TIR (Toll-interleukin-1 receptor) domains are essential for plant immune signaling. A central TIR-derived signal is 2ʹcADPR, a cyclic ADP-ribose (ADPR) molecule that is gen...
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Asaf Levy @asaflevylab.bsky.social · 06/09/2026
journals.plos.org/plospathogen...
journals.plos.org
Acidic and alkaline conditions enhance Staphylococcus aureus α-toxin pore formation and cytotoxicity
Author summary Staphylococcus aureus is a bacterium that can cause severe invasive infections. S. aureus produces many toxins during infection, of which α-toxin (AT) is clinically relevant. AT is a po...
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Asaf Levy @asaflevylab.bsky.social · 01/09/2026
Pretty amazing ecological effect. Microalgae from the Nile river delta are currently clogging Israel's desalination plants in the Mediterranean, disrupting agriculture in desert which is based on desalinated water. @bejalab.bsky.social
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Asaf Levy @asaflevylab.bsky.social · 31/08/2026
RIP
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Asaf Levy @asaflevylab.bsky.social · 29/08/2026
Amazing achievement to Bonnie Bassler. The medal is shared with the most creative scientists ever lived since the 18th century.
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Asaf Levy @asaflevylab.bsky.social · 27/08/2026
A nice ecological story from Nancy Moran's lab. www.nature.com/articles/s41...
nature.com
Colibactin produced by a honeybee gut symbiont mediates pathogen defence - Nature Microbiology
A colibactin-producing symbiont in honeybee guts defends against opportunistic pathogens and confers protection.
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Asaf Levy @asaflevylab.bsky.social · 25/08/2026
For nearly 20 years I have used this pic as my FB profile image and already forgot where it was taken by my wife. But today, while hiking with my kids in Aigüestortes i Estany de Sant Maurici National Park (Spain) I found the exact corner and my sons reproduced it.
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Asaf Levy @asaflevylab.bsky.social · 07/08/2026
Elections are on Oct. "A sane government is required"
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Itai Yanai @itaiyanai.bsky.social · 31/07/2026
Science funding has still not reached gender equality: "Projects led by male PIs received roughly twice the mean funding compared to female PIs." www.sciencedirect.com/science/arti...
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Asaf Levy @asaflevylab.bsky.social · 26/07/2026
The pope promotes people to saints after having evidence for their miracles. Pope Leo already canonized 9 people in his short term. Pope Francis: more than 60. And I am thinking about this graph
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Asaf Levy @asaflevylab.bsky.social · 22/07/2026
The only people who ever loved war for long were profiteers, generals, staff officers, and whores. They all had the best and finest time of their lives and most of them made the most money they had ever made. Hemingway, 1936
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Asaf Levy @asaflevylab.bsky.social · 17/07/2026
The year is 2500 Technology enables sampling of the entire ecosystem at atom resolution within milliseconds. Analysis is done using ImageJ
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Asaf Levy @asaflevylab.bsky.social · 16/07/2026
We're recruiting a fungal biologist to our friendly department at the Hebrew University of Jerusalem, Rehovot, Israel. For details contact our chair. Talented non-Israli applicants are welcome to apply. See below.
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Asaf Levy @asaflevylab.bsky.social · 14/07/2026
GRC toxins: France vs. Spain game
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Asaf Levy @asaflevylab.bsky.social · 11/07/2026
Acadia NP
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Asaf Levy @asaflevylab.bsky.social · 10/07/2026
A cool work from Ilya and Rotem on the 'damage-associated molecular pattern' that bacteria sense to detect phage attack (DNA degradation leading to increase in methylated nucleotides) and the immune response as abortive infection. www.science.org/doi/10.1126/...
science.org
Bacteria sense virus-induced genome degradation via methylated mononucleotides
Phages often degrade the genome of their bacterial host to individual nucleotides. Here we describe Metis, a bacterial defense system that directly senses phage-mediated host genome degradation. Metis...
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Asaf Levy @asaflevylab.bsky.social · 07/07/2026
This God somehow has many hands when it comes to Argentina's football
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Asaf Levy @asaflevylab.bsky.social · 06/07/2026
And all the roads we have to walk are winding And all the lights that lead us there are blinding @proftracypalmer.bsky.social Good luck!!!
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Eric Topol @erictopol.bsky.social · 04/07/2026
On our 250th birthday, celebrating the contribution of immigrants and international collaboration —46% of people with doctoral-level degrees working in US science and engineering fields are foreign-born
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Asaf Levy @asaflevylab.bsky.social · 02/07/2026
From the lead authors of Haimlich S. et al. 2024 and Bograd A. et al. 2025 The lab's best achievement till now!
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Asaf Levy @asaflevylab.bsky.social · 01/07/2026
Anusha Majumder from Sahar Melamed's lab @saharmelamed.bsky.social identified sRNAs in P. putida that affects plant growth.
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Asaf Levy @asaflevylab.bsky.social · 26/06/2026
After this amazing half someone needs to name a new taxonomic group: Dembelearcheota
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Jose Bengoechea @josebengoechea.bsky.social · 26/06/2026
Recruiting a postdoc to join my lab at @lshtm.bsky.social to work in an MRC porgramme grant funded project to dissect the gut colonziation by Klebsiella. In vivo and in vitro models, and new approaches to identify Klebsiella factors involved. jobs.lshtm.ac.uk/vacancy.aspx...
jobs.lshtm.ac.uk
Job Opportunity at LSHTM: Research Fellow
The London School of Hygiene & Tropical Medicine (LSHTM) is one of the world’s leading public health universities. Our mission is to improve health and health equity in the UK and worldwide; working i...
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Asaf Levy @asaflevylab.bsky.social · 25/06/2026
Our new review paper is out: Discovery of novel antimicrobials within microbiomes www.sciencedirect.com/science/arti... A fun collaboration with @delafuentelab.bsky.social and the 1st paper of Erez Weisberg and Aya Friedman
sciencedirect.com
Discovery of novel antimicrobials within microbiomes
Antimicrobial-resistant bacterial and fungal pathogens constitute a severe threat to public health. The pace at which new antimicrobials are being rel…
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Asaf Levy @asaflevylab.bsky.social · 21/06/2026
A relatively recent work with cool finding. Many questions remain open. "A complete DNA repair system assembled by two endosymbionts restores heat tolerance of the insect host" www.pnas.org/doi/10.1073/...
pnas.org
A complete DNA repair system assembled by two endosymbionts restores heat tolerance of the insect host | PNAS
DNA repair systems are essential to maintain genome integrity and stability. Some obligate endosymbionts that experience long-term symbiosis with t...
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Asaf Levy @asaflevylab.bsky.social · 19/06/2026
Meyerowitz, Sundaresan, Dangl, JG Jones, Staskawics and the late Chory received yesterday the 2024 and 2025 Wolf Prize in agriculture in the Knesset. (Among laureates in other natual sciences) 'The founding fathers'
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Asaf Levy @asaflevylab.bsky.social · 17/06/2026
Amazing group of Wolf Prize in Agriculture awardees (2020, 2024,2025) today at the Hebrew Univeristy faculty of agriculture. In the picture: Elliot Meyerowitz Venkatesan Sundaresan Brian Staskawicz Jonathan D. G. Jones Caroline Dean Missing: Jeffery Dangl (presenting from home) The late Joanne Chory
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Asaf Levy @asaflevylab.bsky.social · 17/06/2026
What does change a gene's definition from a 'regulator' to a 'master regulator'? The fact that you are studying it
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Asaf Levy @asaflevylab.bsky.social · 17/06/2026
Messi is a legend
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Asaf Levy @asaflevylab.bsky.social · 15/06/2026
So many brave Iranians lost they lives becaue they believed him.
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Asaf Levy @asaflevylab.bsky.social · 12/06/2026
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Toni Gabaldón @tonigabaldon.bsky.social · 10/06/2026
Our paper "Gene ancestries reveal diverse microbial associations during eukaryogenesis.” is finally out in Nature. Eukaryogenesis was likely a gradual process shaped by multiple microbial partners and virus-mediated gene transfer, rather than a single binary symbiosis. doi.org/10.1038/s415...
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Asaf Levy @asaflevylab.bsky.social · 11/06/2026
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Sholto David @sholtodavid.bsky.social · 02/06/2026
Today I'm posting a new blog about an astonishing scientific own goal. Hundreds of papers have reported using a totally wrong antibody to investigate the tumor suppressor p16. This mistake has happened because scientists have muddled the names of two proteins. forbetterscience.com/2026/06/02/m...
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Asaf Levy @asaflevylab.bsky.social · 09/06/2026
A cool story. www.science.org/doi/10.1126/...
science.org
A plant immune receptor mediates tritrophic interactions by linking caterpillar detection to predator recruitment
A plant receptor detects caterpillar attack and triggers emission of chemical cues to attract predatory wasps.
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Asaf Levy @asaflevylab.bsky.social · 08/06/2026
How your email found me today (by the genious Haim Goldberg)
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Asaf Levy @asaflevylab.bsky.social · 06/06/2026
The Natufian culture lived in the area of today's Israel and Lebanon from 15,000–11,500 Before Present. In the Eynan site people discovered a burial of 45 yo woman and her puppy, which is the oldest physical evidence for dog domestication. Published in Nature in 1978 www.nature.com/articles/276...
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Asaf Levy @asaflevylab.bsky.social · 05/06/2026
www.science.org/doi/10.1126/...
science.org
Molecular mimicry of a pathogen virulence target by a plant immune receptor
Plants and animals respond to pathogen attack by mounting innate immune responses that require intracellular nucleotide-binding leucine-rich repeat (NLR) proteins. These immune receptors detect pathog...
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Asaf Levy @asaflevylab.bsky.social · 04/06/2026
Love parade in Jerusalem
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