Reposted by Zeynep BaharogluSTCmicrobeblog @stcmicrobeblog.bsky.social · 27/09/2026#RNASky #MicroSky 0143
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 27/09/2026Loss of restriction-modification methyltransferases drives persistence to fluoroquinolones in Pseudomonas aeruginosa www.biorxiv.org/content/10.6...biorxiv.orgLoss of restriction-modification methyltransferases drives persistence to fluoroquinolones in Pseudomonas aeruginosaThe resurgence of phage therapy has renewed interest in the interplay between phage resistance and antibiotic susceptibility and has stimulated research in the emergent field of non-canonical cellular... 051
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026Sparsomycin inhibits translation through a conserved mechanism across all domains of life academic.oup.com/nar/article/...academic.oup.comSparsomycin inhibits translation through a conserved mechanism across all domains of lifeAbstract. Sparsomycin (SPA) is a broad-spectrum inhibitor of protein synthesis with activity across all three domains of life. Although SPA has long been k 044
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026An RNA Language Model trained on sequence alone reveals the structural logic of Internal Ribosome Entry Sites www.biorxiv.org/content/10.6...biorxiv.orgAn RNA Language Model trained on sequence alone reveals the structural logic of Internal Ribosome Entry SitesMillions of RNA sequences are readily available, but the structures that determine their function are not. Picornaviruses initiate translation through Internal Ribosome Entry Sites (IRESes), RNA eleme... 043
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026Fluorescent proteins misreport ribosome abundance under translation inhibition www.biorxiv.org/content/10.6...biorxiv.orgFluorescent proteins misreport ribosome abundance under translation inhibitionFluorescent proteins are widely used as quantitative reporters of protein abundance in living cells. Here we show that this relationship can break down under translation inhibition: the cellular ribos... 021
Reposted by Zeynep BaharogluInstitut Pasteur Education @pasteuredu.bsky.social · 17/09/2026𝗝𝗼𝗶𝗻 𝘁𝗵𝗲 𝗠𝗢𝗢𝗖 Resistance to Antibacterial Agents, 𝗲𝗻𝗿𝗼𝗹𝗹𝗺𝗲𝗻𝘁 𝗶𝘀 𝗻𝗼𝘄 𝗼𝗽𝗲𝗻! 👉 Register here: www.fun-mooc.fr/en/courses/r... 💬 Course in English with subtitles (English/French/Spanish) 📆 Course access starts: November 3, 2026 🎓 100% free and self-paced. Paid Certificate Option @amazeld.bsky.social 034
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 20/09/2026Bacterial growth rate in populations and single cells 🦠💫 www.nature.com/articles/s41... beautiful review by Petra Levin and Jue Wangnature.comBacterial growth rate in populations and single cells - Nature MicrobiologyIn this Perspective, Levin and Wang give a brief history of bacterial growth rate and discuss how it is connected to nutrient availability and macromolecule synthesis, with a focus on (p)ppGpp as a ce... 083
Reposted by Zeynep BaharogluSTCmicrobeblog @stcmicrobeblog.bsky.social · 19/09/2026ribosomologists take note👇 just button up your CsdA coat if you get too cold... #MicroSky 0134
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/09/202616S rRNA Modifications Are Dispensable for Viability but Collectively Optimize Ribosome Biogenesis and Translation Initiation in Escherichia coli www.biorxiv.org/content/10.6...biorxiv.org16S rRNA Modifications Are Dispensable for Viability but Collectively Optimize Ribosome Biogenesis and Translation Initiation in Escherichia coliRibosomal RNAs contain numerous conserved nucleotide modifications, yet the functional importance of most of these modifications remains unclear. In Escherichia coli , deletion of individual 16S rRNA ... 043
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/09/2026Ribosome profiling reveals translational dynamics between an archaeal virus and its host www.biorxiv.org/content/10.6...biorxiv.orgRibosome profiling reveals translational dynamics between an archaeal virus and its hostHost-virus interactions remain poorly understood in archaea, whose information processing systems harbor a mosaic of bacterial and eukaryotic features. Here, we used complementary multiomics to invest... 011
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/09/2026Single-molecule nanopore sequencing reveals spatial coordination of rRNA modifications in human ribosomes www.biorxiv.org/content/10.6...biorxiv.orgSingle-molecule nanopore sequencing reveals spatial coordination of rRNA modifications in human ribosomesRibosomal RNA has a high density of epitranscriptomic modifications essential for faithful translation, and their levels vary across cell types and in disease. Typically, rRNA modifications are quanti... 041
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 15/09/2026Circular-pre-rRNA-dependent and -independent rRNA maturation pathways in Archaea rnajournal.cshlp.org/content/earl...rnajournal.cshlp.orgCircular-pre-rRNA-dependent and -independent rRNA maturation pathways in Archaea A monthly journal publishing high-quality, peer-reviewed research on all topics related to RNA and its metabolism in all organisms 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 12/09/2026Pyridoxal-phosphate-dependent biosynthesis of aminovaleramide by AvaS in tRNA 🦠💫 Discovery of AvaS, the enzyme cqtqlyzing ava2C modificqtion on tRNA-ile www.nature.com/articles/s41...nature.comPyridoxal-phosphate-dependent biosynthesis of aminovaleramide by AvaS in tRNA - Nature Chemical BiologySun, Wu et al. identify AvaS as a pyridoxal-phosphate-dependent RNA-modifying enzyme, producing the tRNA modification ava2C from k2C in bacteria and plants and linking RNA chemistry to translational r... 031
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 12/09/2026Acquisition and erosion of toxin-antitoxin systems in bacterial chromosomes 🦠 academic.oup.com/mbe/advance-...academic.oup.comValidate User 0104
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 12/09/2026Actuation of CRP activating region 3 by formylation modulates the Vibrio cholerae response to oxidative DNA damage 🦠 www.pnas.org/doi/10.1073/...pnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 11/09/2026Atlas of stress-induced changes in yeast tRNA modification levels www.biorxiv.org/content/10.6... with a major impact of pH on U34 modificationbiorxiv.orgAtlas of stress-induced changes in yeast tRNA modification levelsTransfer RNA (tRNA) modifications are essential for accurate translation and cellular adaptation to environmental changes. Although short-term modification dynamics are well documented, the impact of ... 042
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 11/09/2026Resistance to antibacterial peptide nucleic acids through altered ribosome function 🦠 www.biorxiv.org/content/10.6...biorxiv.orgResistance to antibacterial peptide nucleic acids through altered ribosome functionWhen used as antibacterial agents, Peptide Nucleic Acid (PNAs) are generally designed to base-pair with complementary sequences of an essential mRNA and block translation initiation. Although bacteria... 068
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 11/09/2026Full-length transcriptomics and proteomics reveal how genome minimization reshapes gene expression in synthetic bacteria 🦠 www.biorxiv.org/content/10.6...biorxiv.orgFull-length transcriptomics and proteomics reveal how genome minimization reshapes gene expression in synthetic bacteriaJCVI-syn1.0 (Syn1.0) and JCVI-syn3A (Syn3A), genetically synthetic and genome-reduced versions of the naturally occurring bacterium Mycoplasma mycoides, are landmark platforms for defining the gene se... 011
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 08/09/2026N4-Acetylcytidine enhances synthetic mRNA translation yield and fidelity www.nature.com/articles/s41... and the original papernature.comN4-Acetylcytidine enhances synthetic mRNA translation yield and fidelity - NatureDifferent RNA modifications elicit different translation elongation rates for in vitro transcribed mRNAs that result in disparate translation outputs and fidelity, as shown here for N4-acetylcytidine ... 021
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 08/09/2026Ac4C adds a new letter to the mRNA medicine lexicon bu Kristin Koutmou, www.cell.com/molecular-ce...cell.comAc4C adds a new letter to the mRNA medicine lexiconTherapeutic mRNAs rely heavily on the incorporation of the RNA modification N1- methylpseudouridine for their efficacy. Schiffers et al. present N4-acetylcytidine as a robust alternative that further ... 034
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 06/09/2026☀️ 🌘 RNA Modifications Newsletter -End of summer reading for people who find modified nucleosides relaxing. Highlights: anticodon-loop crosstalk, MiaA/tryptophan attenuation, ribosomes missing >10 rRNA modifications causing wrong conformations, and growth-dependent remodeling of the tRNA pool.rnamodifupdates.substack.com☀️ 🌘 RNA Modifications Newsletter - End of summer 2026 editionIssue #13 062
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 06/09/2026High-throughput recovery of integron cassettes for gene discovery screens 🦠💫 tool for discovering new genes www.nature.com/articles/s41...nature.comHigh-throughput recovery of integron cassettes for gene discovery screens - Nature MicrobiologyIntegron insertion sites engineered into counterselection markers allow large-scale and high-throughput capture of integron-encoded genes from genetically tractable bacteria or DNA samples. 060
Reposted by Zeynep BaharogluSTCmicrobeblog @stcmicrobeblog.bsky.social · 28/08/2026(pneumococcus) cell divisionists take note👇 a super 🧵 for #MicroSky 0155
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 26/08/2026A generalized growth law for translation- and transcription-targeting antibiotics captures drug interactions 🦠💊 www.biorxiv.org/content/10.6...biorxiv.orgA generalized growth law for translation- and transcription-targeting antibiotics captures drug interactionsBacterial growth laws quantitatively connect intracellular resource allocation to growth rate, enabling accurate predictions of physiology and antibiotic responses. Yet these laws have been rigorously... 032
Reposted by Zeynep BaharogluSebastian Baumgarten @sebbaumgarten.bsky.social · 19/08/2026The singular job of all known ribosomes: synthesizing protein. Enter the malaria parasite. In our new work, we show that Plasmodium evolved an entire new kind that does just the opposite - inhibit mRNA translation. www.biorxiv.org/content/10.6...biorxiv.org 18439
Reposted by Zeynep BaharogluRonald Breaker @ronbreaker.bsky.social · 25/08/2026Our new paper in PNAS reports the presence of Na+ and Li+ #aptamer RNAs in mammals. The latter hints at natural roles for #lithium in humans and provides direct links to #BipolarDisorder. Now seeking funding to study Li+ biology and create new therapeutics. 0168
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 24/08/202616S ribosomal RNA modification drives transcript-specific translation efficiency 🦠 with RsmH/MraW in B. subtilis www.sciencedirect.com/science/arti...sciencedirect.comhttps://www.sciencedirect.com/science/article/pii/S2211124726009654 051
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 24/08/2026Nicotinamide-Based Covalent Inhibitors of tRNA (m1G37) Methyltransferase (TrmD) to Increase Antibacterial Activity 🦠 pubs.acs.org/amclct/artic...pubs.acs.orgNicotinamide-Based Covalent Inhibitors of tRNA (m1G37) Methyltransferase (TrmD) to Increase Antibacterial ActivityAbstract. Bacterial tRNA (m1G37) methyltransferase (TrmD) is an essential enzyme required for accurate translation and represents an attractive antibacteri 020
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/202628% resistant infections to last resort antibiotics... www.pasteur.fr/en/home/rese...pasteur.frAntibiotic Resistance: in Africa, urinary tract infections may become untreatableA study by the Institut Pasteur and Pasteur Network Institutes, published in JAMA Network Open, reveals a rapid decline in the effectiveness of antibiotics against urinary tract infections in six Afri... 052
Reposted by Zeynep BaharogluSpringer Nature @springernature.com · 19/08/2026The world’s oceans are on the brink of setting an all-time heat record, reaching temperatures that could roil marine ecosystems and sap the ocean’s ability to take up carbon dioxide from the air. spklr.io/63329ERgzW 🧪spklr.ioOcean temperatures set to break all-time record: what’s next?High sea surface temperatures are expected to weaken ocean carbon sinks and damage coral reefs. 096
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Structural adaptations for enhanced translation kinetics in evolved ribosomes academic.oup.com/nar/article/...academic.oup.comStructural adaptations for enhanced translation kinetics in evolved ribosomesAbstract. The ribosomal RNA sequence governs translation dynamics, yet understanding how changes beyond the conserved catalytic centers influence kinetics 011
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Short-chain fatty acids activate the glutamate-dependent acid resistance system via the tRNA-modifying Mnm pathway in Escherichia coli journals.asm.org/doi/10.1128/...journals.asm.orgShort-chain fatty acids activate the glutamate-dependent acid resistance system via the tRNA-modifying Mnm pathway in Escherichia coli | Journal of BacteriologySurvival of enteric bacteria in the gastrointestinal tract depends on their ability to sense and respond to diverse forms of acid stress. This study identifies oxygen limitation, growth phase,… 010
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Cryo-EM reveals that Escherichia coli tRNA-transglycosylase can bind and act upon two tRNAs doi.org/10.1073/pnas...doi.orghttps://doi.org/10.1073/pnas.260189512 010
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Selective Reprogramming of Ribosome Assembly and Translational Control during Bacterial Growth Phase Transitions doi.org/10.1021/acso...doi.orgSelective Reprogramming of Ribosome Assembly and Translational Control during Bacterial Growth Phase TransitionsAbstract. Most bacteria in natural environments experience prolonged nutrient limitation resembling the stationary phase and only intermittently encounter 031
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Harmonized nucleoside mass spectrometry enables reproducible cross-platform RNA modification quantification www.biorxiv.org/content/10.6...biorxiv.orghttps://www.biorxiv.org/content/10.64898/2026.07.17.739095v1 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026A variant rRNA serves as a translational repressor in Plasmodium falciparum www.biorxiv.org/content/10.6...biorxiv.orghttps://www.biorxiv.org/content/10.64898/2026.06.17.732804v2 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Selective dissociation of vacant 70S ribosomes by RsfS promotes bacterial adaptation to nutrient starvation www.biorxiv.org/content/10.1...biorxiv.orghttps://www.biorxiv.org/content/10.1101/2024.03.23.586405v2 001
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Quantitative profiling of basal and stress-induced ribosome collisions www.biorxiv.org/content/10.6...biorxiv.orghttps://www.biorxiv.org/content/10.64898/2026.07.21.739814v1 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection www.biorxiv.org/content/10.1...biorxiv.orghttps://www.biorxiv.org/content/10.1101/2024.04.04.588121v2 001
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Atlas of stress-induced changes in yeast tRNA modification levels www.biorxiv.org/content/10.6...biorxiv.orghttps://www.biorxiv.org/content/10.64898/2026.08.17.745200v1 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Anticodon nucleotide modifications affect translational tuning by the ribosomal CAR surface www.biorxiv.org/content/10.6...biorxiv.orghttps://www.biorxiv.org/content/10.64898/2026.07.29.740946v1 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026A revised genome annotation of the model cyanobacterium Synechocystis based on start and stop codon-enriched ribosome profiling and proteogenomics www.biorxiv.org/content/10.6...biorxiv.orghttps://www.biorxiv.org/content/10.64898/2025.12.20.695498v3 021
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 19/08/2026Queuosine tRNA modification regulates translational adaptation and virulence of Leishmania mexicana journals.plos.org/plosbiology/...journals.plos.orgQueuosine tRNA modification regulates translational adaptation and virulence of Leishmania mexicanaRegulation of gene expression in the protozoan parasite Leishmania mexicana is known to be largely post-transcriptional, but the control of these processes is still not fully understood. This study… 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 18/08/2026academic.oup.com/nar/article/... 🦠academic.oup.comThe leading region of many plasmids is adapted for translational efficiencyAbstract. To successfully transfer, conjugative plasmids must overcome a recipient cell’s defence mechanisms. The leading region of many plasmids—the first 02316
Reposted by Zeynep BaharogluFrances Yap @ribo1214.bsky.social · 18/08/2026#RNASky @zeynepbaharoglu.bsky.social 031
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/08/2026stress ribosomes? 🦠 Deletion of the ribosomal protein gene rpmJ activates zntA transcription through a translation-dependent mechanism in Escherichia coli doi.org/10.64898/202...doi.orghttps://doi.org/10.64898/2026.08.06.743257 023
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/08/2026academic.oup.com/nar/article/...academic.oup.comComprehensive post-transcriptional modification profiles in individual Staphylococcus aureus tRNA speciesAbstract. Post-transcriptional modifications modulate transfer RNA (tRNA) structure, stability, and codon decoding properties, contributing to translation 010
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/08/2026academic.oup.com/nar/article/... 🦠academic.oup.comMiaA-mediated tRNA modifications couple tryptophan attenuation and changes in tRNA abundance to complex phenotypes in Pseudomonas aeruginosaAbstract. Transfer RNA (tRNA)-modifying enzymes are emerging as key regulators of bacterial physiology. MiaA, a tRNA isopentenyltransferase, is well studie 010
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/08/2026A detailed molecular picture of protein folding during active translation doi.org/10.64898/202...doi.orghttps://doi.org/10.64898/2026.07.03.736445 000
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/08/2026Climate change and AMR 🦠https://www.nature.com/articles/s41579-026-01285-znature.comClimate change and antimicrobial resistance - Nature Reviews MicrobiologyIn this work, Kalanxhi and Laxminarayan review the evidence supporting the links between climate change and antimicrobial resistance, highlight opportunities for action and identify areas wherein furt... 012