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Jan-Willem Veening

@veeninglab.com
2.2K followers 1.7K following 166 posts

Professor and director at the Department of Fundamental Microbiology, University of Lausanne, veeninglab.com. Interested in antibiotic resistance, bacterial cell biology, host-microbe interactions.

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Reposted by Jan-Willem Veening
Kate Baker @ksbakes.bsky.social · 25/09/2026
We have an open Assistant/Associate Professor position in Pathogen Biology at the Department of Genetics - come and join us! 🦠 🧫 🧬https://www.cam.ac.uk/jobs/assistantassociate-professor-in-pathogen-genetics-pc51175
cam.ac.uk
Assistant/Associate Professor in Pathogen Genetics
Applications are invited for an Assistant or Associate Professorship in Pathogen Genetics to be held in the Department of Genetics. We are searching for a talented individual with a track record of fu...
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Brian D. Wade @astrobrian.bsky.social · 28/09/2026
Bacterial chromosomal gene positioning is likely shaped by selection on both mean and growth-dependent expression #genomes #genetics #genes #evolution #evoSky #scienceSky journals.plos.org/plosgenetics...
journals.plos.org
Bacterial chromosomal gene positioning is likely shaped by selection on both mean and growth-dependent expression
Author summary Bacterial gene positioning affects gene expression because genes near the origin of chromosomal replication are replicated earlier than those near the terminus and thus have higher gene...
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Dorentina Humolli @humollidorentina.bsky.social · 25/09/2026
Very happy to share that HIDEN-SEQ is now out in @natmicrobiol.nature.com! Using this technique, we recapitulated decades of established phage genetics and uncovered new gene functions, including previously unknown anti-defense factors against several defense systems. www.nature.com/articles/s41...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 25/09/2026
Here it is online, a week after the teaser talk at #EMBOBacNet... @natmicrobiol.nature.com by @humollidorentina.bsky.social et al from @aharms485.bsky.social with @veeninglab.com Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ www.nature.com/articles/s41...
nature.com
Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ - Nature Microbiology
HIDEN-SEQ (hidden Acr-enabled transposon-insertion sequencing) is a transposon-insertion sequencing method for phages that systematically links their genes to selectable phenotypes.
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Thomas Ipoutcha @tomipou.bsky.social · 16/09/2026
Finally out! 🎉 After 3 years of postdoc in London, here is my main work, now published in Nature Comm. (and as co-corresponding author!) Using a combination of bioinformatic and experimental approaches, we propose a model of plasmid evolution in Staphylococcus. www.nature.com/articles/s41... ⬇️ 1/4
nature.com
Mobile genetic elements drive a plasmid fusion and deletion lifecycle shaping evolution and antimicrobial resistance - Nature Communications
Plasmids drive bacterial adaptation, but how their diversity arises has remained unclear. Here, they show that in Staphylococcus aureus, mobile genetic elements repeatedly fuse and delete plasmids, re...
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Dirk-Jan Scheffers 🟥 @dirkscheffers.bsky.social · 22/09/2026
Statements about attractiveness and excellence from @vonderleyen.ec.europa.eu and others in this article notwithstanding I’d like to add some critique 1/ marie-sklodowska-curie-actions.ec.europa.eu/whats-new/ne...
marie-sklodowska-curie-actions.ec.europa.eu
MSCA Postdoctoral Fellowships 2026 receives record number of applications
The 2026 call has attracted considerable interest from the research community with 21,627 applications submitted.
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Jan-Willem Veening @veeninglab.com · 18/09/2026
Assessment of the impact of manual curation in BioCyc #MicroSky doi.org/10.3389/fbin...
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Nature Microbiology @natmicrobiol.nature.com · 17/09/2026
Out Now! Bacterial growth rate in populations and single cells #MicroSky
go.nature.com
Bacterial growth rate in populations and single cells
Nature Microbiology, Published online: 17 September 2026; doi:10.1038/s41564-026-02449-6In this Perspective, Levin and Wang give a brief history of bacterial growth rate and discuss how it is connected to nutrient availability and macromolecule synthesis, with a focus on (p)ppGpp as a central hub regulating resource allocation and, indirectly, growth rate at the single-cell level.
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Pedro Beltrao @pedrobeltrao.bsky.social · 04/09/2026
I used Fable 5.1 to run an AI research project given a bioinformatics research idea (cross links +AlphafoldDB), with the objective of producing a submission folder (manuscript, figures, code, supplementary files, cover letter). It did so in about 7h with still fairly poor results. The process:
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Jan-Willem Veening @veeninglab.com · 03/09/2026
Clonal does not mean uniform. #MicroSky Our new review explores how genetically identical bacteria adopt different cell states, and how that diversity shapes survival, cooperation, antibiotic responses and gene transfer. 🧵 doi.org/10.1146/annu...
doi.org
Decoding Bistability and Drivers of Phenotypic Variation in Bacteria
In a process known as phenotypic heterogeneity or phenotypic variation, bacteria can produce distinct phenotypes within an isogenic population in response to shifting environmental conditions. Noise i...
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Yolanda Schaerli @yschaerli.bsky.social · 02/09/2026
Excited to share our latest preprint! 🧫 We move beyond observing bacterial Voronoi patterns to actively controlling gaps, anti-gaps, curved boundaries, asymmetric structures, seedless regions, and complex composites. @dmf-unil.bsky.social @fbm-unil.bsky.social www.biorxiv.org/content/10.6...
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Seth Dickey @dickeylab.bsky.social · 28/08/2026
So @thesbhowmick.bsky.social adopted a dual-CRISPRi approach to silence two genes per cell in a highly diverse heterogenous pool. This was done similarly for B. subtilis and S. pneumo by the labs of Carol Gross and @veeninglab.com. 3/10
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Seth Dickey @dickeylab.bsky.social · 28/08/2026
I’m thrilled to share our newest study in which @thesbhowmick.bsky.social y.social developed and applied a genome-wide platform to uncover genetic interactions in Staphylococcus aureus and MRSA. www.biorxiv.org/content/10.6... 1/10
biorxiv.org
A genome-wide genetic interaction platform for MRSA reveals connections between cell division and the cell envelope
The bacterial cell cycle is an ensemble of integrated pathways that coordinates cell growth and division. Although these pathways contain a suite of promising antimicrobial targets, their functional o...
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Jan-Willem Veening @veeninglab.com · 28/08/2026
I hadn't thought about the problem of division site selection in a long time. Really cool to see these new studies shining fresh light on such a fundamental question. Especially checkout this work by @aducret.bsky.social & Christophe Grangeasse: doi.org/10.1038/s415...
doi.org
Local peptidoglycan composition defines division site selection in Streptococcus pneumoniae - Nature Microbiology
Sequential peptidoglycan carboxylase activity of DacA and DacB generates a local peptidoglycan signature that recruits MapZ and establishes the division site at the Streptococcus pneumoniae cell equat...
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Renske van Raaphorst 🟥 @vrrenske.bsky.social · 26/08/2026
figure 1 looks very familiar to me 😅
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Jan-Willem Veening @veeninglab.com · 26/08/2026
Great to see an independent validation of our 2017 PNAS work on MapZ. Less great to not see it even mentioned nor cited.. #MicroSky www.pnas.org/doi/full/10.... febs.onlinelibrary.wiley.com/doi/abs/10.1...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 23/08/2026
Decoding Bistability and Drivers of Phenotypic Variation in Bacteria Annual Reviews in Microbiology by Jesús Cámara-Almirón, Milena Jaskólska, and @veeninglab.com at @dmf-unil.bsky.social www.annualreviews.org/content/jour...
annualreviews.org
Decoding Bistability and Drivers of Phenotypic Variation in Bacteria
In a process known as phenotypic heterogeneity or phenotypic variation, bacteria can produce distinct phenotypes within an isogenic population in response to shifting environmental conditions. Noise i...
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Kumaran Ramamurthi @ramamurthilab.bsky.social · 20/08/2026
@felixrl.bsky.social told us previously *how* #Staph aureus does orthogonal cell division. In his latest paper he tells us *why*: to arrange cell surface proteins required to form staphylococcal abscess colonies. (Videos S1-S2 are amazing!). 🤯 www.cell.com/cell-reports...
cell.com
Orthogonal cell division mediated by PcdA organizes surface virulence factors to drive staphylococcal abscess community formation
Staphylococcus aureus divides along sequential orthogonal planes, but the function of this geometry has remained unclear. Ramos-León et al. show that orthogonal division promotes uniform deployment of...
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Johanna Joyce @johannajoyce.bsky.social · 19/08/2026
A fun collection of ideas in #Nature today on how to make lab meetings more engaging, inclusive & useful! Thanks for including our lab’s “flashlight” round in the tips - a simple ritual to give everyone a voice & stay connected to what’s happening across the group 🧪 www.nature.com/articles/d41...
nature.com
Twenty-two easy ways to power up your lab meetings
Scientists share help and advice on how they got their research discussions flowing.
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Dr. Michael D. L. Johnson @copperbae.bsky.social · 12/08/2026
Check it out!
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Jan-Willem Veening @veeninglab.com · 11/08/2026
Looks cool! New work by @elowitzlab.bsky.social: Engineered protein circuits for cancer therapy www.biorxiv.org/content/10.1...
biorxiv.org
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Charles Mullon @charlesmullon.bsky.social · 03/08/2026
Looking for an Associate Prof position? Interested in behavioural ecology & cultural evolution? Come join us at the Dpt of Ecology and Evolution in Lausanne🇨🇭 @dee-unil.bsky.social @unil.bsky.social! Great department & great place to live. Pls RP. Apply here: wwwfbm.unil.ch/releve/appli...
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Jan-Willem Veening @veeninglab.com · 04/08/2026
New preprint! #MicroSky Led by @ayaiizuka.bsky.social & Maria Vittoria Mazzuoli, we ask what helps Staphylococcus aureus enter, survive inside and evade treatment in human monocytes. www.biorxiv.org/content/10.6...
biorxiv.org
Staphylococcus aureus Mnh1 cation–proton antiporter promotes phagocytic uptake and intracellular survival in human monocytes
While Staphylococcus aureus is predominantly an extracellular human commensal, it can also exhibit an intracellular lifestyle that enables its persistence within diverse host cell types, including mon...
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MEEhubs @meehubs.bsky.social · 29/07/2026
Registration for MEEHubs2026 taking place Aug 3-5 is closing this Friday (July 31, 2026)!! There's still time to join us in Montreal, Ann Arbor, Irvine, Morelia, Zurich, Manchester, Chernihiv, or online. Register here: meehubs.org
meehubs.org
Home
Abstract submission now closed but we now invite all poster presenters to upload their posters to our platform using the above link by July 31, 2026.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 28/07/2026
Join us at Institute of Biology Leiden (IBL) as an Assistant/Associate/Full Professor in Mechanisms of Disease Apply before 31st August, 2026: careers.universiteitleiden.nl/job/Assistan...
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Vaughn Cooper @vscooper.micropopbio.org · 26/07/2026
In 2014, Jason Rosch and I met at a GRC in Tuscany and sketched an idea on a cocktail napkin: what if we evolved S.pneumo in mice, treated them with antibiotics, varied their immune systems and watched what won? 11 years and a huge team effort later, it's out in @cp-cellhostmicrobe.bsky.social 🧵
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Ákos T Kovács @evolvedbiofilm.bsky.social · 23/07/2026
The adaptive landscapes of three global Escherichia coli transcriptional regulators @elife.bsky.social by @cauawest.bsky.social et al elifesciences.org/articles/103...
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Rob Waterhouse @rmwaterhouse.bsky.social · 21/07/2026
#GenevaLovesData Geneva's heart beats to the rhythm of life-science data Léman Bleu interview with @sib.swiss director @dessimoz.bsky.social www.lemanbleu.ch/fr/Actualite...
lemanbleu.ch
#GenevaLovesData: Genève comme carrefour mondial des données
Pour Christophe Dessimoz, la cité internationale possède des atouts uniques.
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Emma Slack @mucosalimmunology.bsky.social · 01/07/2026
We are recruiting a lab manager for my group in Oxford. This is a lovely team doing great things, and you could be an important part of it! See here: www.path.ox.ac.uk/vacancy/lab-... Please spread the word!
path.ox.ac.uk
Lab Manager - Molecular Immunology - Dunn School
Laboratory Manager/Senior Scientist position in the Molecular Mucosal Immunology group at Oxford
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Typas Lab @typaslab.bsky.social · 29/06/2026
How can we harness the vast functional diversity of microbes on our planet? Join us at EMBL Heidelberg from 8–10 December 2026 to hear about ongoing efforts to decode gene function and organisation in human gut microbes, and to present your own research. www.embl.org/about/info/c...
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Omar El-Halfawy @omarel-halfawy.bsky.social · 27/06/2026
Thrilled to share our recent paper at @cellpress.bsky.social's @cp-iscience.bsky.social studying the antibiotic responses of MRSA, one of the most common wound pathogens, under wound infection-like conditions vs. standard lab test conditions. www.cell.com/iscience/ful...
cell.com
Uncovering the mechanisms of clinically relevant altered antibiotic responses of Staphylococcus aureus under wound infection-mimetic conditions
Biophysics; Clinical microbiology; Microbiology; Molecular biology; Systems biology
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Waggoner Lab @labwaggoner.bsky.social · 25/06/2026
Cell-to-cell cooperation through membrane vesicles enhances antibiotic persistence @science.org @bcmfromthelabs.bsky.social www.science.org/doi/10.1126/... www.science.org/doi/10.1126/...
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Jan-Willem Veening @veeninglab.com · 26/06/2026
Interesting thread ⬇️
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Gerry Wright @gdwantibiotics.bsky.social · 24/06/2026
Latest from the lab and a fantastic collaboration with Eric Brown's team at @mcmasteriidr.bsky.social. Screening for new antibiotics from actinomycete extracts under nutrient-deprived conditions identifies a megacluster of synergistic antibiotics that target biotin biosynthesis. rdcu.be/fqejG
rdcu.be
A Streptomyces megacluster encodes synergistic biotin-targeting antibiotics
Nature - In Streptomyces spp., a conserved biosynthetic gene megacluster produces an arsenal of distinct antimicrobials that converge on bacterial biotin biosynthesis as a naturally evolved...
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anna brogan @apbrogan.bsky.social · 23/06/2026
Another chapter of my thesis is out! We asked whether we could pair proteome-wide AlphaFold screening with Tn-seq to identify biologically relevant protein-protein interactions. We identify ClcR (formerly YerH) as a component of the Rod complex in Gram-positive bacteria. www.pnas.org/doi/10.1073/...
pnas.org
A broadly conserved gram-positive lipoprotein regulates cell elongation | PNAS
The cell wall peptidoglycan (PG) protects virtually all bacteria from osmotic lysis and specifies cell shape. Synthesis of this exoskeleton is carr...
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STCmicrobeblog @stcmicrobeblog.bsky.social · 16/06/2026
NAPs anybody? it's H-NS again – @jayhinton.bsky.social you will like it, I assume 😊 #MicroSky #PhageSky
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 19/06/2026
Enterococcus faecalis biofilm rewires neutrophil metabolism to suppress antimicrobial functions www.biorxiv.org/content/10.64898/20…
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Jan-Willem Veening @veeninglab.com · 17/06/2026
Beautiful work by @kkjimbsky.bsky.social in collaboration with @nvastenhouw.bsky.social @pengellab.bsky.social where we used CRISPRi-seq in a zebrafish meningitis model of pneumococcal infection coupled with metabolomics. #MicroSky www.biorxiv.org/content/10.1...
biorxiv.org
In vivo genome-wide CRISPRi-Seq in Streptococcus pneumoniae reveals host-adaptive pathways essential for meningitis and identifies new therapeutic targets
Streptococcus pneumoniae is an important human pathogen that causes invasive diseases and remains the leading cause of bacterial meningitis. However, the bacterial determinants required for survival w...
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Jan-Willem Veening @veeninglab.com · 11/06/2026
New preprint led by Vik Minhas that shows that only a small subset of epithelial cells actually respond to pneumococcal infection and activate innate immune genes. Great collaboration with @bartdeplancke.bsky.social @roi1avraham.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Epithelial innate immune sensing of pneumococci is inherently restricted to a small cellular minority across species and infection niches
Streptococcus pneumoniae colonises the nasopharynx asymptomatically yet causes life-threatening invasive disease. How it navigates early epithelial immune surveillance to cause disease remains unclear...
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Cascales Lab @cascaleslab.bsky.social · 08/06/2026
Happy to share the last publication of @bobytaillefer.bsky.social, showing that #T6SS heterogeneity is an attenuation strategy to optimizes the trade-off between competitive killing and survival.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 11/05/2026
See a brief review summarizing the use of synthetic microbial communities (SynComs) for revealing the ecology of specialized metabolites [my holiday break writing exercise] portlandpress.com/essaysbioche... #MicrobiomeEcology at Institute of Biology Leiden (IBL)
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Teresa O'Meara @teresaomeara.bsky.social · 11/05/2026
We are hiring @umichmicroimmuno.bsky.social ! Tenure-track assistant professor position in our Microbiology and Immunology department. We are especially looking for someone working in bacterial pathogenesis
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Tung Le @tunglejic.bsky.social · 07/05/2026
@biorxiv-microbiol.bsky.social Who knew ParB-CTPase fold can kill!!! A protein fold best known for segregating chromosomes…can be transformed into a potent antibacterial toxin in some plant and animal pathogens. www.biorxiv.org/content/10.6...
biorxiv.org
Repurposing a chromosome segregation ParB-CTPase fold into an ATPase toxin for contact-dependent growth inhibition in plant and animal pathogens
Bacterial competition drives the evolution of antibacterial mechanisms, yet how new activities arise remains poorly understood. A major route to innovation is the reuse of pre-existing genetic systems, whereby conserved protein modules are repurposed in new biological contexts to generate new capabilities. Here, we show that the ParB-CTPase fold, a conserved nucleotide-binding module best known for its role in chromosome segregation, can be functionally repurposed as an antibacterial toxin. We identify ToxB, a ParB-like domain embedded within the polymorphic toxin region of contact-dependent inhibition systems and show that it functions as a potent antibacterial effector. Structural and biochemical analyses reveal that ToxB retains the core architecture of the ParB-CTPase fold but lacks DNA-binding capability and preferentially binds ATP. This shift in nucleotide specificity underpins a distinct mode of action, in which ATP binding and hydrolysis trigger rapid nucleoid compaction, chromosome segregation defects, oxidative stress, cell chaining, and ultimately cell lysis. ToxB also exhibits toxic activity in plant cells, suggesting that it targets conserved cellular processes. Together, these findings provide direct experimental evidence that the ParB-NTPase fold is biologically versatile and can be repurposed for biological roles fundamentally distinct from its ancestral function in DNA segregation. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 221776/Z/2/Z, 227755/Z/23/Z Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/X01097X/1 Diamond Light Source, MX32728
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Jan-Willem Veening @veeninglab.com · 04/05/2026
Pretty cool, 2 different PREreviews @prereview.bsky.social on our (mainly @camiloperezc6h6.bsky.social's lab) preprint of the structure of the pneumococcal teichoic acid flippase TacF: www.biorxiv.org/content/10.6...
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Willem van Schaik @wvschaik.bsky.social · 04/05/2026
Interesting paper 'Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes' academic.oup.com/mbe/article/...
academic.oup.com
Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes
Abstract. Pathogenic multidrug-resistant bacteria with hybrid chromosomes have emerged as a significant global healthcare threat. These include the pandemi
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Jan-Willem Veening @veeninglab.com · 01/05/2026
Congratulations to Jessica for a fantastic PhD defense with maximum score 6/6! Many thanks also to the committee @hingmer.bsky.social Petr Broz Richard Benton @unil.bsky.social @fbm-unil.bsky.social @dmf-unil.bsky.social
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European Research Council (ERC) @erc.europa.eu · 29/04/2026
NEWS: The ERC Scientific Council has listened to the concerns from members of the research community about changes to the re-submission rules, intended to manage the surge in demand for grants. The Scientific Council will readjust some of the changes: link.europa.eu/TBqRQJ
link.europa.eu
ERC Scientific Council readjusts rules for reapplication
The ERC Scientific Council has listened to the concerns from members of the research community about the recent announcement on changes to the re-submission rules. The changes, intended to manage the ...
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Jan-Willem Veening @veeninglab.com · 24/04/2026
Spring beers with @gruberlab.bsky.social @mblokesch.bsky.social @justinecollier.bsky.social
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