Sign in

Philipp Engel

@pengellab.bsky.social
1.3K followers 609 following 46 posts

Microbiologist at UNIL Switzerland, interested in Microbiota-host interactions, symbiosis, evolution and genomics, and social bees engelbeelab.com

PostsRepliesMedia
Reposted by Philipp Engel
PLOS Biology @plosbiology.org · 18/09/2026
In a prior #PLOSBiology study, @yschaerli.bsky.social @pengellab.bsky.social &co engineered #bee gut bacteria to sense their microenvironment. plos.io/3P8ioWJ In their new study, they engineer a native honey bee symbiont into a living #biosensor for arabinose. plos.io/4gXz0Pt 🧪
Macro photograph of a honeybee. Image credit: Bart Zijlstra, UNIL
192
Reposted by Philipp Engel
fbm-unil.bsky.social @fbm-unil.bsky.social · 26/05/2026
Congratulations @acabirol.bsky.social from @pengellab.bsky.social @dmf-unil.bsky.social @fbm-unil.bsky.social @unil.bsky.social on this new publication @pnas.org 👏
151
Reposted by Philipp Engel
Amélie Cabirol @acabirol.bsky.social · 21/05/2026
Really happy to see our paper finally published in PNAS 🎉 We used honey bees to study how gut microbiota shape cognition and found that learning benefits only appear when the full microbial community is present — not with individual bacterial species alone. www.pnas.org/doi/10.1073/...
2205
Reposted by Philipp Engel
Mizrahi Lab @mizrahilab.bsky.social · 30/03/2026
New study on honeybee gut microbiota! It shows how priority effects allow first-arriving strains to dominate their niche, creating unique microbial profiles even in identical environments. Cool Study! @aiswarya.bsky.social, @pengellab.bsky.social, @dmf-unil.bsky.social doi.org/10.1093/isme...
doi.org
Priority effects drive strain-level community composition of honeybee gut microbiota
Abstract. Gut microbial communities often differ at the strain level among individual hosts, but the mechanisms driving this variation remain poorly unders
0136
Reposted by Philipp Engel
fbm-unil.bsky.social @fbm-unil.bsky.social · 23/03/2026
🦠 Who gets there first... wins? 🐝 A new study on #honeybee #gut #microbiota shows that microbiome assembly isn’t just about who is present, but when they arrive. Published by @aiswarya.bsky.social @pengellab.bsky.social @dmf-unil.bsky.social 👉 Read the paper: academic.oup.com/ismej/advanc...
academic.oup.com
Priority effects drive strain-level community composition of honeybee gut microbiota
Abstract. Gut microbial communities often differ at the strain level among individual hosts, but the mechanisms driving this variation remain poorly unders
173
Reposted by Philipp Engel
Yolanda Schaerli @yschaerli.bsky.social · 17/12/2025
New preprint! 🐝 We engineered a bacterial biosensor to reveal micron-scale arabinose gradients in the honeybee gut. Congratulations to Audam and all co-authors. Great collaboration with @pengellab.bsky.social as part of the NCCR Microbiomes at @fbm-unil.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
Engineered symbiont biosensor maps micron-scale sugar gradients in the honeybee gut
The honeybee gut microbiota plays a key role in shaping host health and susceptibility to disease. Yet, the nutrient environment it experiences within the gut remains poorly characterized. In particul...
0219
Philipp Engel @pengellab.bsky.social · 25/11/2025
New preprint from our lab! www.biorxiv.org/content/10.1... @aiswarya.bsky.social tested the role of priority effects in shaping the honeybee gut microbiota using an elegant combinatorial experimental design. A thread🧵....
biorxiv.org
| bioRxiv
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
1188
Philipp Engel @pengellab.bsky.social · 04/11/2025
🐝🦠 New paper: rdcu.be/eOf7A Phages may drive microbial diversity, yet we often don’t even know how phages & bacteria correlate in nature. Our new study tackles this in the honeybee gut, thanks to the great work of PhD student @malickndiaye.bsky.social at @dmf-unil.bsky.social @fbm-unil.bsky.social
nature.com
Phage diversity mirrors bacterial strain diversity in the honey bee gut microbiota - Nature Communications
Authors analyse paired viral and bacterial shotgun metagenomics data from individual honeybee guts, revealing modular, nested phage–bacteria networks, with viral diversity mirroring bacterial strain c...
15623
Philipp Engel @pengellab.bsky.social · 14/10/2025
Happy to announce that our comparative metagenomic analysis of the gut microbiota of five honeybee species - spearheaded by @aiswarya.bsky.social - is finally published in a peer-reviewed journal! rdcu.be/eKMCs @fbm-unil.bsky.social @dmf-unil.bsky.social 🧵👇
rdcu.be
Evolution of gut microbiota across honeybee species revealed by comparative metagenomics
Nature Communications - Here, the authors perform metagenomic analysis of honeybee gut microbes, uncovering many previously unidentified species and host specific differences in composition and...
16422
Reposted by Philipp Engel
Benjamin Wolfe @benwolfe.bsky.social · 16/09/2025
Such a delight to share our work on the evolution of a cheese rind fungus in @currentbiology.bsky.social. This is the fantastic PhD work of @nicolasleonlouw.bsky.social and resulted from amazing collaborations, a wedding proposal(!), an undergrad course, & more! 🧵 www.cell.com/current-biol...
cell.com
Long-term monitoring of a North American cheese cave reveals mechanisms and consequences of fungal adaptation
Using a unique longitudinal sampling approach, Louw et al. demonstrate how a cheese-associated Penicillium population has adapted in an artisan cheese production facility in Vermont, USA. Adaptation i...
311848
Reposted by Philipp Engel
Snorre Sulheim @sulheim.bsky.social · 20/08/2025
Excited to share the first results from my postdoc at @dmf-unil.bsky.social with @saramitri.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
Microbes release lower-value metabolites at higher rates
Microbes release a wide range of metabolites into their environment, yet the reasons for this release and the factors that influence release rates are not well understood. Here, using a combination of...
12812
Philipp Engel @pengellab.bsky.social · 18/02/2025
We are looking for a bioinformatician with expertise in microbiome data analysis join our team at the University of Lausanne. The successful candidate will lead and support research projects within nccr-microbiomes.ch. More details here: shorturl.at/mC46o . Please share with potential candidates.
shorturl.at
Opportunités de carrière : Research Associate position in bioinformatics support (22124)
11321
Philipp Engel @pengellab.bsky.social · 05/02/2025
We are looking for a postdoc in bioinformatics interested in broad questions about the ecology and evolution of host-associated microbiomes using social bees as model. Please share with potential candidates and if interested apply here: career5.successfactors.eu/career?caree...
career5.successfactors.eu
Career Opportunities: Postdoctoral position in bioinformatics/gut microbiota ecology and evolution (22087)
02624
Reposted by Philipp Engel
Ran Blekhman @blekhman.bsky.social · 19/11/2024
New perspective with a comprehensive overview of the microbiome heritability concept www.nature.com/articles/s41...
nature.com
Estimates of microbiome heritability across hosts - Nature Microbiology
In this Perspective, Morris and Bohannan discuss heritability of microbiome-mediated traits across hosts and future research questions with implications for animal and plant breeding.
03514
Reposted by Philipp Engel
Mark A. Hanson @hansonmark.bsky.social · 13/11/2024
I am hiring! PhD studentship available through the SWbio DTP. The interested student will investigate the evolution of innate immune signalling in a model species group. Infection biology & #Drosophila genetics combined! #ImmunoSky #AcademicSky More info: mahansonresearch.weebly.com/blog/phd-stu...
mahansonresearch.weebly.com
PhD studentship! Deadline Dec 11th 2024
SWbio application link: https://www.swbio.ac.uk/biomolecular-and-biophysical-studies/ For inquiries, please email: m.hanson@exeter.ac.uk Based in: University of Exeter, Penryn, Cornwall, UK....
13128
Reposted by Philipp Engel
Jack A Gilbert @gilbertjacka.bsky.social · 11/11/2024
CALL TO ACTION: By publishing this Editorial concurrently across journals, we are demanding immediate, tangible steps that harness the power of microbiology and the expertise of researchers and policymakers to safeguard the planet for future generations. doi.org/10.1128/msys...
doi.org
Microbial solutions must be deployed against climate catastrophe | mSystems
This paper is a call to action. By publishing concurrently across journals like an emergency bulletin, we are not merely making a plea for awareness about climate change. Instead, we are demanding imm...
11818
Philipp Engel @pengellab.bsky.social · 06/11/2024
PhD position available in our lab in 🇨🇭! Interested in microbial ecology and evolution in the context of #Symbiosis, #Microbiota, #Bees? Like to analyze shotgun metagenomics data with the possibility for fieldwork and experiments? This is for you. Apply here: shorturl.at/swHf1 #SymbioSky
shorturl.at
Opportunités de carrière : PhD position in gut microbiota ecology and evolution (21945)
04245
Reposted by Philipp Engel
Alejandro Manzano Marín @amanzanom.bsky.social · 08/05/2024
Today in our #Symbiosis and #Evolution seminar series: @andrewhq9.bsky.social on the #HoneyBee #microbiota and the metabolic crosstalk between and among host and symbionts @dome-vienna.bsky.social @pengellab.bsky.social #SymbioSky
051
Reposted by Philipp Engel
Yolanda Schaerli @yschaerli.bsky.social · 05/03/2024
Very happy to see this published! 🤩Congratulations to Audam and all co-authors. This is the result of a very nice collaboration with the @pengellab.bsky.social as part of the NCCR Microbiomes.
094
Reposted by Philipp Engel
Luis Teixeira @lmvteixeira.bsky.social · 21/02/2024
Join us in the south of Portugal for the SymbNET International Conference on Host-Microbe Symbiosis. 10-13 June. Registration is open until 15th March. More details at igc.idloom.events/symbnet-conf... #SymbioSky
076
Reposted by Philipp Engel
Alejandro Manzano Marín @amanzanom.bsky.social · 18/02/2024
#SymbNET International Conference on Host-Microbe #Symbiosis. June 10 - 13, 2024. Olhão, Portugal igc.idloom.events/symbnet-conf... #SymbioSky
igc.idloom.events
SymbNET International Conference on Host-Microbe Symbiosis
SymbNET International Conference on Host-Microbe Symbiosis Olhão, Portugal   About Hosts and microbes form long-term symbiotic interactions that shape their biology at multiple levels, from physiology...
167
Philipp Engel @pengellab.bsky.social · 26/01/2024
Don't miss this opportunity! Few days left to apply to the Tenure-track assistant professor position in our Department at the University of Lausanne and with the NCCR Microbiomes. Topics: microbial interactions, microbiome research, microbial symbiosis (...) Deadline: Jan 31! tinyurl.com/4k2mevax
0914
Philipp Engel @pengellab.bsky.social · 16/01/2024
Two PhD positions available in our lab @FBM_UNIL. We are looking for microbiologists interested in microbiota-host interactions, symbiosis, metabolomics, and social bees! Lausanne is amazing: Vibrant scientific environment & high quality of life 🇨🇭🚞🏂🌄🧪🐝🦠 shorturl.at/ptyOT shorturl.at/dipvA
21421
Philipp Engel @pengellab.bsky.social · 15/01/2024
Finally published! We show that host metabolites facilitate gutcolonization of a symbiont of social bees. Huge congrats to co-lead authors @andrewhq9.bsky.social & Yassine El Chazli. Super collabo with NanoSIMS expert Anders Meibom EPFL and our Electron Microscopy Facility FBM_UNIL 🐝 🧪
nature.com
Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi - Na...
Comparative metabolomics and NanoSIMs reveal that the honey bee symbiont Snodgrassella alvi uses host-derived metabolites to colonize the gut, indicating adaptation to a specific metabolic niche in it...
12514
Philipp Engel @pengellab.bsky.social · 15/01/2024
We have a ‘new’ preprint spearheaded by @joanitoliberti.bsky.social It is not an easy one to get pass the editorial desk of journals, may be because we challenge previous findings. However, IMO it is an important contribution to our field & will help improving future gnotobiotic bee experiments 👇🧪
072
Philipp Engel @pengellab.bsky.social · 08/12/2023
Our Department at University of Lausanne is recruiting a tenure-track Assist. Prof. on microbial interactions linked to the nccr-microbiomes.ch Don't miss this opportunity to join a friendly, dynamic department in a city with hard-to-beat quality of life. Apply tinyurl.com/4k2mevax by Jan 31! 🧪
03443
Philipp Engel @pengellab.bsky.social · 08/12/2023
A new preprint from our collabo with the Schaerli lab at UNIL. Amélie Cabirol and Audam Chhun teamed up with others from the two labs to investigate fecal sampling and transplantation in honey bees 🦠 🤓 🐝 to better understand gut microbiota transmission. 🧪 www.biorxiv.org/content/10.1...
030
Philipp Engel @pengellab.bsky.social · 08/12/2023
After two long incubation periods at the journal's desk, our #metagenomics study on #strain level differences in the bee gut microbiota has been published. Big thank you to 1st author Gilles Baud, Kirsten Ellegaard, & @aiswarya.bsky.social l who pushed the paper across the finish line. 🧪 🐝 🦠
link.springer.com
Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome betwee...
Background Strain-level diversity is widespread among bacterial species and can expand the functional potential of natural microbial communities. However, to what extent communities undergo consistent...
192
Reposted by Philipp Engel
Sean Gibbons 🦠💩 @gibbological.bsky.social · 08/12/2023
The course lectures & symposium talks from the 2023 @isbsci.bsky.social Virtual Microbiome Series are now edited & posted to YouTube! If you have students who need a crash course in 16S data analysis or community-scale metabolic modeling, send them here: www.youtube.com/playlist?lis...
youtube.com
2023 ISB Microbiome Series
Share your videos with friends, family, and the world
12820
Reposted by Philipp Engel
Ákos T Kovács @evolvedbiofilm.bsky.social · 24/11/2023
Metabolic exchanges are ubiquitous in natural microbial communities Nature Microbiology perspective by @kostchristian.bsky.social et al @sarilog.bsky.social www.nature.com/articles/s41...
14630
Reposted by Philipp Engel
Jan-Willem Veening @veeninglab.com · 27/09/2023
Almost time for our annual, in person, Impromptu symposium! November 24 in the Biophore at UNIL in Lausanne. This year's topic ‘The many sides of microbial evolution’ with 7 fantastic speakers. Registration is free at: forms.gle/NnLkTXbFTmLE...
162
Reposted by Philipp Engel
Mark A. Hanson @hansonmark.bsky.social · 29/09/2023
The strain on scientific publishing 📄: We've got issues. Scientists overwhelmed, editors overworked, constant special issue invites, mass article retractions, journal delistings… JUST WHAT IS GOING ON!? See: arxiv.org/abs/2309.15884 A 🧵1/n #AcademicChatter #PublishOrPerish #PhDAdvice #PhDChat
16368241
Reposted by Philipp Engel
Marianne Alleyne @cotesia.bsky.social · 21/09/2023
For the INSECT MICROBIOME crowd: The Department of Entomology at the University of Illinois will be hiring an Assistant Professor in Insect Microbiomes. Please share this ad with any one working in this area. (Application deadline = October 6th) illinois.csod.com/ux/ats/caree...
Aerial picture of the University of Illinois at Urbana-Champaign Quad, showing multiple buildings. Including the Illini Union in the foreground and Foellinger Hall at the other end of the main quad.
12930
Philipp Engel @pengellab.bsky.social · 18/09/2023
SymbNET is a EU-funded network for research on host-microbe symbiosis symbnet.eu. We participated in a SymbNET workshop with the labs of Luis Teixeira and Hinrich Schulenburg. We had fruitful discussions about recent results, novel approaches and challenges in studying animal-microbe symbiosis.
012
Reposted by Philipp Engel
Ákos T Kovács @evolvedbiofilm.bsky.social · 18/09/2023
Neuroactive metabolites modulated by the gut microbiota in honey bees MolMicro Mini Review from Engel lab onlinelibrary.wiley.com/doi/10.1111/...
042
Reposted by Philipp Engel
Nils Rädecker @radecker.bsky.social · 13/09/2023
That feeling when you spent three weeks on a NanoSIMS mosaic just to falsify your initial hypothesis… At least 15N-ammonium uptake in the Hydra-Chlorella symbiosis looks pretty. #microsky #evosky 🧫🦠🔬
Mosaic of 120+ NanoSIMS images showing 15N-ammonium uptake in Green Hydra.
1143
Reposted by Philipp Engel
Brett Baker @archaeal.bsky.social · 14/09/2023
Eukaryotic immunity in Asgard archaea! Excited to share preprint looking at viral defense systems in Asgard archaea! We found that archaea played roles in the origin of immunity in eukaryotes. www.biorxiv.org/content/10.1...
biorxiv.org
Asgard archaea defense systems and their roles in the origin of immunity in eukaryotes
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
0132
Reposted by Philipp Engel
Abby Dernburg @adernburg.bsky.social · 08/09/2023
Our department mcb.berkeley.edu is soliciting applications for an Assistant Professor position studying fundamental aspects of genetics, genomics, evolution, and/or developmental biology. Bring it on! aprecruit.berkeley.edu/JPF04110
aprecruit.berkeley.edu
Assistant Professor - Genetics, Genomics, Evolution and Development - Department of Molecular and Ce...
University of California, Berkeley is hiring. Apply now!
482102
Reposted by Philipp Engel
Sean Gibbons 🦠💩 @gibbological.bsky.social · 08/09/2023
I'm really excited to announce that the 2023 ISB Virtual Microbiome Series registration site is live! 🥳 We will host a 2-day bioinformatic course and a 1-day symposium Oct. 11-13. This year's theme is 'how the ecology of our guts protects us from pathogens' 🛡️ isbscience.org/microbiome20...
12627
Reposted by Philipp Engel
STCmicrobeblog @stcmicrobeblog.bsky.social · 05/09/2023
phage aficionadas y aficionados take note 👇 twitter.com/MicrobesInfe... www.nature.com/articles/s41...
twitter.com
Tweet by @MicrobesInfect
Identification of the #bacteriophage nucleus protein interaction network https://t.co/hHk8QO2Tna #phage
053
Philipp Engel @pengellab.bsky.social · 05/09/2023
Great article by Claudia Lange, Martin Kaltenpoth and co-authors on the impact of intraspecies diversity in insect microbioms on host phenotypes and evolution www.nature.com/articles/s41... 🧪
021
Philipp Engel @pengellab.bsky.social · 31/08/2023
@pengellab.bsky.social This is a really nice, thought-provoking piece by Toby Hammer. Deficiency of microbiota-free hosts: lack of microbial benefits (as the field usually assumes) or evolutionary addiction (mostly neglected in the field)? www.cell.com/trends/micro... 🧪🦠🐁🐝👫
021
Philipp Engel @pengellab.bsky.social · 31/08/2023
Hey Bsky! It is about time for a first post from the Engellab! Our group works on the bee gut microbiota to study evolution and ecology of microbiota-host interactions and symbiosis. We are currently on a 3-days SymbNET symposium with the labs of Luis Teixeira and Hinrich Schulenburg in Portugal.
Back: Philipp, Andrew, Garance, Jérome, Giulia, Malick, Gonçalo, Front: Aurélien, Joanito, Aiswarya, Lucie
0120