Sign in

Dorentina Humolli

@humollidorentina.bsky.social
187 followers 157 following 19 posts

PhD student studying phage-host interactions at ETH Zürich | Lab of Molecular Phage Biology

PostsRepliesMedia
Dorentina Humolli @humollidorentina.bsky.social · 06/10/2026
We wrote a short “Behind the Paper” post about our HIDEN-SEQ journey together with @aharms485.bsky.social. Check it out: go.nature.com/4yBHsdy Special to share it with the @natmicrobiol.nature.com cover, featuring the amazing art of the great scientist and artist Sophia Zimmermann from our lab!
0182
Dorentina Humolli @humollidorentina.bsky.social · 25/09/2026
Very happy to share that HIDEN-SEQ is now out in @natmicrobiol.nature.com! Using this technique, we recapitulated decades of established phage genetics and uncovered new gene functions, including previously unknown anti-defense factors against several defense systems. www.nature.com/articles/s41...
38443
Reposted by Dorentina Humolli
Vivek Mutalik @vivekmutalik.bsky.social · 19/09/2026
Preprint here: Please let us know if we have missed any references to cite. This is like looking at past 60 years of work with a small window. www.biorxiv.org/content/10.6...
biorxiv.org
Genome-wide characterization of host factors involved in single-stranded RNA and DNA phage infection pathways
Single stranded RNA (ssRNA) and single stranded DNA (ssDNA) bacteriophages represent a key component of the global virome, yet the host genetic networks supporting their infection cycles remain poorly...
12010
Reposted by Dorentina Humolli
Doudna Lab @doudna-lab.bsky.social · 19/09/2026
Out now in Science: Two papers from our lab reveal VIPR, an RNA-guided DNA-targeting system in bacteriophages, providing clues to the origins of CRISPR www.science.org/doi/10.1126/... www.science.org/doi/10.1126/... Congrats to Peter Yoon, @kenjmloi.bsky.social @terryzzy.bsky.social, T.Docter & team
science.org
A noncontiguous code for RNA-guided DNA recognition at the origin of CRISPR-Cas
CRISPR-Cas provides RNA-mediated adaptive immunity, but how its first RNA-guided effector arose is unclear. In this study, we report the discovery of Viral Interference Programmable Repeat (VIPR) syst...
217771
Reposted by Dorentina Humolli
Alexander Harms @aharms485.bsky.social · 09/06/2026
The "Research Day" at our department D-HEST is always caleidoscope of exciting science from food over health to medicine. Phage biotechnology was well represented with Dorentina @humollidorentina.bsky.social and Enea @phagemuffin.bsky.social from our group and the lab of Martin Loessner. 🧫🧬🍻
194
Reposted by Dorentina Humolli
Enea Maffei @phagemuffin.bsky.social · 18/05/2026
1/6 👻 Something strange in your liquid agar? Who you gonna call? Thermophile hunters. Our new @asm.org #MRA paper reports the complete genome sequence of Geobacillus stearothermophilus strain CS7089 isolated from a commercial agar preparation.
22912
Reposted by Dorentina Humolli
Luuk Loeff @lloeff.bsky.social · 14/05/2026
Happy to share our latest pre-print on the Druantia defense system. We find that Type III Druantia uses a cooperative helicase-nuclease mechanism to sense and degrade replication-associated forked DNA structures. www.biorxiv.org/content/10.6... A🧵
biorxiv.org
55329
Reposted by Dorentina Humolli
Nature Microbiology @natmicrobiol.nature.com · 10/03/2026
Out Now! Conditional activation of Cas13 enforces lysogeny in a native type VI-A CRISPR host #MicroSky
go.nature.com
Conditional activation of Cas13 enforces lysogeny in a native type VI-A CRISPR host
Nature Microbiology, Published online: 10 March 2026; doi:10.1038/s41564-026-02288-5RNA-targeting CRISPR in Listeria seeligeri restricts the lytic cycle of temperate phages but tolerates prophage acquisition while also preventing induction—a system that enables acquisition of beneficial prophages while mitigating the risks of lysis.
0117
Reposted by Dorentina Humolli
Aritz Roa-Eguiara @aritz-roa.bsky.social · 07/03/2026
🚨Preprint! Happy to share the research from my PhD “Genome delivery of a contractile tailed phage and its superinfection exclusion mechanism”. We use cryoEM to study the genome ejection of the phage T4, revealing how the tape measure protein regulates the process. www.biorxiv.org/content/10.6...
610640
Reposted by Dorentina Humolli
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 24/02/2026
Phage-encoded CasPRs transcriptionally silence diverse CRISPR-Cas systems www.biorxiv.org/content/10.64898/20…
021
Reposted by Dorentina Humolli
Alexander Harms @aharms485.bsky.social · 20/11/2025
🚨Preprint alert - this is a big one! We transfer the revolutionary power of TnSeq to bacteriophages. Our HIDEN-SEQ links the "dark matter" genes of your favorite phage to any selectable phenotype, guiding the path from fun observations to molecular mechanisms. A thread 1/8
1121290
Dorentina Humolli @humollidorentina.bsky.social · 20/11/2025
🚀New preprint from our lab! I am very excited to finally share what has been the main focus of my PhD for the past almost 3 years! It is about viral dark matter and a powerful tool we built to shed light on it. 🧬💡 Continue reading (🧵)
412954
Reposted by Dorentina Humolli
Emmanuele Severi @emmseveri.bsky.social · 02/11/2025
#mycrosky #synbio www.biorxiv.org/content/10.1...
biorxiv.org
Adapting CRISPR-associated transposons for rapid and high-throughput reverse genetics
CRISPR-associated transposons (CAST) use guide RNAs to direct their transposition and are being harnessed as tools for programmable genome engineering across diverse bacterial species. However, CAST s...
086
Reposted by Dorentina Humolli
Osterman Ilya @ostermanilya.bsky.social · 06/11/2025
Bacteria can sense when a virus starts shredding their genome — by detecting methylated mononucleotides. Here’s the story of how we discovered the Metis defense system 👇 www.biorxiv.org/content/10.1...
413749
Reposted by Dorentina Humolli
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 15/11/2025
Surviving phage attack dynamically regulates bacterial immunity to defeat counterdefenses www.biorxiv.org/content/10.1101/202…
0186
Reposted by Dorentina Humolli
Nitzan Tal @nitzantal.bsky.social · 13/07/2025
📢Preprint out! Excited to share my final work from the @soreklab.bsky.social! We mined phage dark matter using structural features shared by anti-defense proteins (viral tools that help phages bypass bacterial immunity) to guide discovery. Found 3 new families targeting immune signaling!
39846
Reposted by Dorentina Humolli
Molly Gale (Gale-Hammell Lab) @mollygale.bsky.social · 16/06/2025
Most people fail to appreciate just how groundbreaking McClintock's work truly was. Her transposon work was first presented in 1950 - before we knew, for example, "DNA is the genetic material." Long before most discoveries that we consider fundamental to the question of: "What is a gene?"
Timeline for major discoveries regarding "what is a gene"
32912
Reposted by Dorentina Humolli
PLOS Biology @plosbiology.org · 08/04/2025
The BASEL collection of E. coli #phages is limited by its host strain. @humollidorentina.bsky.social @damienpiel.bsky.social @aharms485.bsky.social &co use a modified host to add 36 new phages, revealing roles of O-antigen in recognition & R-M systems in immunity @plosbiology.org 🧪 plos.io/4jirGvX
A fanciful depiction of BASEL phages on a roadmap. Credit: Fabienne Estermann
06824
Reposted by Dorentina Humolli
Alexander Harms @aharms485.bsky.social · 06/02/2025
🚨 🧬 Updated preprint on the completed BASEL collection - what's new? Some fun with bacterial immunity and a new P22 relative infecting E. coli K-12. A thread 🧵
412248