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Nellie Kwang

@nelliekwang.bsky.social
40 followers 32 following 6 posts

MD-PhD student at UCI, bioinformatician in training, potter, chorister, runner, cat mother

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Nellie Kwang @nelliekwang.bsky.social · 27/08/2026
My PI @vivekswarup.bsky.social recently got a 3D printer. I had an fMRI done in 2023 for a research study, so I asked them to send me the imaging data, then I used brain2print by Chris Rorden and team to create a 3D printable model of my brain*! 😁🧠 www.nature.com/articles/s41... *NOT to scale...
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Nellie Kwang @nelliekwang.bsky.social · 25/08/2026
Got the NoA for my F30 last night- still can't believe it!! This was a resubmission from April 2025, and after over a year of waiting I assumed I didn't have a shot anymore. Then my PO reached out two months ago asking for a response to reviewers, and I got this in my inbox last night! 🥳
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Soyon Hong @soyonhonglab.bsky.social · 10/07/2026
Thrilled to share: we show that neuronal hyperactivity drives C1q-mediated synapse loss via brain-recruited B cell/IgM, revealing unexpected neuroimmune crosstalk in the adult brain. Congrats to Gerard Crowley who led this w/ resilience & creativity & our whole team! www.science.org/doi/10.1126/...
science.org
C1q and immunoglobulins mediate activity-dependent synapse loss in the adult brain
Complement component 1q (C1q), the initiator of the classical complement cascade, mediates synaptic elimination in development and disease, yet the triggers for its deposition on synapses remain uncle...
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Rosa Paolicelli @paolicellilab.bsky.social · 08/07/2026
Our work on #Microglia and #TDP-43 in early #brain development is finally out @natneuro.nature.com! Congrats to the brilliant Anne-Claire Compagnion 🎉 and thanks to the many collaborators!!! Enjoy the read!! @fbm-unil.bsky.social www.nature.com/articles/s41...
nature.com
Microglial TDP-43 mediates myelin refinement and represses Tyrobp cryptic exon inclusion in mice - Nature Neuroscience
Compagnion et al. show that TDP-43 loss in microglia causes myelin defects, oligodendrocyte precursor cell imbalance and motor deficits in mice. They identify TDP-43 as a regulator of the TREM2-DAP12 ...
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Jason Shepherd @jasonsynaptic.bsky.social · 29/06/2026
Very excited for our new paper, now out in @cellcellpress.bsky.social! /🧵 The protein Tau forms intracellular toxic tangles in neurons in Alzheimer’s disease and Tauopathies. Tau pathology slowly spreads from cell-to-cell but the mechanisms are not clear /1 authors.elsevier.com/sd/article/S...
authors.elsevier.com
Arc mediates intercellular tau transmission via extracellular vesicles
Tau pathology spreads cell to cell, but the mechanisms of intercellular tau transmission remain unclear. We find that the neuronal gene Arc is critica…
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Misha Zilberter @mzilberter.bsky.social · 03/04/2026
Our paper is now online at @nataging.nature.com! Alzheimer’s disease begins decades before symptoms—but what drives those earliest changes is still not well understood. We set out to understand how APOE4 disrupts neuronal and network function across aging. 🧵: 1/15 www.nature.com/articles/s43...
nature.com
Neuronal APOE4-induced early hippocampal network hyperexcitability in Alzheimer’s disease pathogenesis - Nature Aging
Young, cognitively normal APOE4 mice display hippocampal network hyperactivity that predicts later memory decline. This phenotype is driven by neuronal APOE4 expression, which causes hyperexcitability...
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Cell - a Cell Press journal @cp-cell.bsky.social · 14/04/2026
Now online! Electromagnetic field-inducible in vivo gene switch for remote spatiotemporal control of gene expression
dlvr.it
Electromagnetic field-inducible in vivo gene switch for remote spatiotemporal control of gene expression
The EMF-inducible gene switch (Ei) platform provides precise spatiotemporal control of gene expression through Cyb5b-mediated calcium oscillations. This system enables Ei-OSK-driven in vivo rejuvenation reprogramming, Ei-mutant APP expression in the context of Alzheimer’s disease, and behavioral rescue in depression through Ei-Tph2-mediated neuromodulation.
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Melissa Cooper, PhD @melcooperphd.bsky.social · 22/04/2026
Astrocytes do so much more than any of us thought - they even communicate among specific brain regions across hemispheres! The journey to this paper spanned nearly a decade, but I'm most excited to see what everyone else does with the tools we've built. There's so much for all of us to explore!
nature.com
Astrocytes connect specific brain regions through plastic networks - Nature
Communication between distant brain regions is mediated by plastic networks of gap junction-coupled astrocytes.
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Keri Martinowich @martinowk.bsky.social · 22/12/2025
I really liked this paper - data supporting super interesting idea that Alzheimer's disease pathology may have evolved as part of an innate immune defense response to microbial infection. www.nature.com/articles/s41...
nature.com
Phosphorylated tau exhibits antimicrobial activity capable of neutralizing herpes simplex virus 1 infectivity in human neurons - Nature Neuroscience
The authors found that the Alzheimer’s disease-associated protein tau, widely considered pathogenic when hyperphosphorylated, has a natural function as part of the innate immune system in the brain an...
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Subhojit Roy MD, PhD @roylab-ucsd.bsky.social · 24/10/2025
Incredible by @odedrechavi.bsky.social...an AI-thingy that reviews your manuscript with a very high bar and takes no prisoners. But you can do this in your pajamas and no one gets to see it. Takes a while but once you get the results you'll know why: www.qedscience.com
qedscience.com
q.e.d Science
Critical Thinking AI for constructive criticism and science evaluation
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Ian Kremer @wolverinebear.bsky.social · 23/09/2025
New landscape of the diagnosis of Alzheimer's disease www.thelancet.com/journals/lan... by @thelancet.com #Alzheimers #dementia #biomarkers #neuroscience #NeuroSkyence
thelancet.com
New landscape of the diagnosis of Alzheimer's disease
Alzheimer's disease involves a drastic departure from the cognitive, functional, and behavioural trajectory of normal ageing, and is both a dreaded and highly prevalent cause of disability to individu...
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Pluchino lab - Regenerative Neuroimmunology @pluchinolab.bsky.social · 15/07/2025
Response of spatially defined microglia states with distinct chromatin accessibility in a mouse model of Alzheimer’s disease | Nature Neuroscience www.nature.com/articles/s41...
nature.com
Response of spatially defined microglia states with distinct chromatin accessibility in a mouse model of Alzheimer’s disease - Nature Neuroscience
The dynamics of microglia states adjacent to or far from amyloid-beta plaques are unclear. Here the authors show that non-plaque-associated microglia modulate the cell population expansion in response...
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Dr. Jean Fan @jef.works · 10/07/2025
In this blog post, I use #RStats to analyze ICE detention data. #Datavisualization shows record numbers of detainees without any criminal records. Further more/bigger ICE facilities are popping up far from the border. Code along and take a look for yourself: jef.works/blog/2025/07... #CodeTutorial
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Jason Shepherd @jasonsynaptic.bsky.social · 12/07/2025
While I’m a big fan of new technologies that help us study human biology…there’s still no replacement for animal research! See my article in Gen News. www.genengnews.com/topics/trans...
genengnews.com
Why We Still Need Animal Research in a World of AI and Organoids
The portrayal of uncaring scientists without any thought for the animals being used in their research is far from the truth.
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Gan Lab @liganlab.bsky.social · 24/06/2025
🚨Our new paper is out!🚨 We uncover a protective mechanism of the rare APOE3 Christchurch (R136S) mutation against tauopathy—by suppressing microglial cGAS–STING–interferon (IFN) pathway, a key inflammatory axis triggered by tau. www.sciencedirect.com/science/arti...
sciencedirect.com
The R136S mutation in the APOE3 gene confers resilience against tau pathology via inhibition of the cGAS-STING-IFN pathway
The Christchurch mutation (R136S) in the APOE3 (E3S/S) gene is associated with attenuated tau load and cognitive decline despite the presence of a cau…
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Nature Neuroscience @natneuro.nature.com · 20/06/2025
At the myelin-axon interface, axon-glial signaling, paranodal architecture, and β-amyloid aggregation are altered in Alzheimer's disease, implicating myelin-axon disruption in disease progression @jgrutzendler.bsky.social @yifeicai.bsky.social www.nature.com/articles/s41...
nature.com
Myelin–axon interface vulnerability in Alzheimer’s disease revealed by subcellular proteomics and imaging of human and mouse brain - Nature Neuroscience
In Alzheimer’s disease (AD), disruptions in myelin and axonal structures occur, although the underlying mechanisms remain unclear. Here the authors show that, at the myelin–axon interface, axon–glial ...
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Nature Neuroscience @natneuro.nature.com · 23/06/2025
Heat shock proteins function as signaling molecules to mediate neuron–glia communication via extracellular vesicles during aging in C. elegans www.nature.com/articles/s41...
nature.com
Heat shock proteins function as signaling molecules to mediate neuron–glia communication in C. elegans during aging - Nature Neuroscience
Glia–neuron interactions are highly complex. Glial cells can sense and modulate different aspects of neuronal activity. Here in Caenorhabditis elegans, the authors show that early aged sensory neurons...
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John Lukens @lukensjohnr.bsky.social · 26/06/2025
Mutations in the human CSF1R gene impact microglia’s maintenance of brain white matter integrity www.nature.com/articles/s41...
nature.com
Mutations in the human CSF1R gene impact microglia’s maintenance of brain white matter integrity - Nature Immunology
Adult-onset leukoencephalopathy with axonal spheroids and pigmented glia is a neurodegenerative disorder caused by pathogenic CSF1R mutations. Here the authors find that microglial loss is linked to r...
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Andrew Octavian Sasmita @aosasmita.bsky.social · 02/07/2025
Emerging connections between myelin and Alzheimer’s disease www.nature.com/articles/s41...
nature.com
Emerging connections between myelin and Alzheimer’s disease - Nature Cell Biology
Recent literature has explored the contributions of oligodendrocytes and myelin dysfunction to Alzheimer’s disease. Here, we discuss emerging evidence that oligodendrocytes may directly contribute to ...
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Lindsay Hohsfield, Ph.D. @lindsayhohsfield.bsky.social · 03/06/2025
Excited to share our new paper out in @cp-neuron.bsky.social today! We discovered the neuroanatomical route that myeloid cells use to enter the brain parenchyma. Check it out here: authors.elsevier.com/c/1lCYs3BtfH...
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Andrew Octavian Sasmita @aosasmita.bsky.social · 08/06/2025
Exploring Iron Deposition Patterns Using Light and Electron Microscopy in the Mouse Brain Across Aging and Alzheimer's Disease Pathology Conditions onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Exploring Iron Deposition Patterns Using Light and Electron Microscopy in the Mouse Brain Across Aging and Alzheimer's Disease Pathology Conditions
(Figure created with Biorender.com. Publication license has been obtained with Biorender).
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Hadley Wickham @hadley.nz · 11/06/2025
Happy 18th birthday ggplot2! #rstats
Balloon wall art inspired by the ggplot2 hex sticker. The display features a hexagonal frame made of black balloons, filled with white balloons inside and surrounded by a background of light and dark blue balloons. A line graph with black balloon segments and round coloured nodes runs across the centre, and the word “ggplot2” is spelled out in black balloon letters below the chart.
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Pailin Chiaranunt @phagocyticpai.bsky.social · 24/05/2025
We're now appreciating how the immune and nervous systems communicate across body & brain, and there's still more to explore! Had a fun time co-writing this with some amazing immunologists and neuroscientists @nickmroz.bsky.social @arimolofskylab.bsky.social @annamolofskylab.bsky.social 😎🧠
science.org
Cross-regulation between the nervous system and type 2 immunity
The nervous and type 2 immune systems regulate each other via cytokines and neurotransmitters, suggesting previously unidentified therapeutic avenues.
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Lance Johnson @johnsonlab.bsky.social · 03/06/2025
What does the APOE 'lipid droplet-ome' look like??? Check out our new paper to find out! www.sciencedirect.com/science/arti... Thanks to first authors @cassifriday.bsky.social and @iostephens.bsky.social +help from Scott Gordon @morganti.bsky.social and @cohenlaboratory.bsky.social labs
sciencedirect.com
APOE4 reshapes the lipid droplet proteome and modulates microglial inflammatory responses
Excess lipid droplet (LD) accumulation is implicated in various diseases, including Alzheimer's disease (AD), yet the mechanisms underlying this accum…
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Andrew Octavian Sasmita @aosasmita.bsky.social · 09/05/2025
Evidence suggesting that microglia make amyloid from neuronally expressed APP: a hypothesis molecularneurodegeneration.biomedcentral.com/articles/10....
molecularneurodegeneration.biomedcentral.com
Evidence suggesting that microglia make amyloid from neuronally expressed APP: a hypothesis - Molecular Neurodegeneration
While APP is largely neuonally expressed, Aβ amyloid is largely produced by microglia as the clearance mechanisms for damaged membranes becomes overwhelmed.
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alexlish.bsky.social @alexlish.bsky.social · 30/04/2025
Thrilled to share my first first-author paper is out @cp-neuron.bsky.social! We show that Alzheimer's disease protective CLU alleles upregulate CLU in response to neuropathology, dampening inflammatory signaling between microglia and astrocytes. Read here www.sciencedirect.com/science/arti...
sciencedirect.com
CLU alleviates Alzheimer’s disease-relevant processes by modulating astrocyte reactivity and microglia-dependent synaptic density
Genetic studies implicate clusterin (CLU) in the pathogenesis of Alzheimer’s disease (AD), yet its precise molecular impact remains unclear. Through u…
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Ryan Flynn @raflynn5.bsky.social · 18/04/2025
Exciting work from @blurtonjoneslab.bsky.social + Spitale labs -- new examples of how iPSC-microglia can be used as a long-term, in vivo platform for a therapeutic protein payload in models of Alzheimer’s disease @cp-cellstemcell.bsky.social sciencedirect.com/science/article/pii/S1934590925000992
sciencedirect.com
Harnessing human iPSC-microglia for CNS-wide delivery of disease-modifying proteins
Widespread delivery of therapeutic proteins to the brain remains challenging. To determine whether human induced pluripotent stem cell (iPSC)-microgli…
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Nature Neuroscience @natneuro.nature.com · 17/04/2025
A Review on #microglia heterogeneity, modeling and cell-state annotation in development and neurodegeneration www.nature.com/articles/s41...
nature.com
Microglia heterogeneity, modeling and cell-state annotation in development and neurodegeneration - Nature Neuroscience
Microglia have key roles in CNS development and neurodegeneration. Here, the authors provide an overview of microglia heterogeneity, cell-state annotation and model systems.
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Dena Dubal @denadubal.bsky.social · 17/04/2025
"We have far to go and more to do" - thanks Katherine Bourzac @bourzac.bsky.social at @nature.com for including me in this thoughtful piece and highlighting our work on the X chromosome. Why women experience #Alzheimer’s disease differently from men www.nature.com/articles/d41...
nature.com
Why women experience Alzheimer’s disease differently from men
Sex and gender research could lead to better, more equitable treatments — if it is allowed to continue without political interference.
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Nature Reviews Neurology @natrevneurol.nature.com · 14/04/2025
New online! Alzheimer disease seen through the lens of sex and gender
bit.ly
Alzheimer disease seen through the lens of sex and gender
Nature Reviews Neurology, Published online: 14 April 2025; doi:10.1038/s41582-025-01071-0Sex and gender influence the entire healthcare ecosystem of Alzheimer disease (AD). In this Review, Castro-Aldrete et al. present a holistic view of sex and gender in AD, and discuss how these factors affect research and policy efforts to improve AD prevention, diagnosis and treatment.
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Rachael Ott @rachaelott.bsky.social · 11/04/2025
For #FluorescenceFriday, tau (cyan) and neurofilament proteins (fire) are shown in these primary hippocampal neurons 🔬 #Neuroscience #Microscopy
Neurofilament proteins (fire) and tau (cyan) are shown in two primary hippocampal neurons.
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Adam Kinzinger @adamkinzinger.substack.com · 31/03/2025
The Trump administration’s war on science is slashing funding, shutting down labs, and driving top researchers overseas. The cost? Medical breakthroughs, technological innovation, and America’s future. My latest adamkinzinger.substack.com/p/the-scienc...
adamkinzinger.substack.com
The Science Brain Drain
How Trump's Cuts Are Crippling American Innovation and Ceding the Future
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ASM @asm.org · 01/04/2025
Removing the top leadership at NIAID, NIH and other health agencies, including the CDC and FDA, will damage America’s position as a leader in groundbreaking research in disease prevention and treatment. That puts us all at risk. Read our statement: asm.org/Press-Releas...
asm.org
ASM Statement on Removal of NIH & NIAID Leadership
Removing the top leadership at NIAID, NIH and other health agencies including CDC and FDA will damage America’s position as a leader in groundbreaking research in disease prevention and treatment.
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Eric Topol @erictopol.bsky.social · 01/04/2025
How I will remember April Fools' Day 2025. Reckless. My heart is out for these dedicated folks at NIH, FDA and CDC www.statnews.com/2025/04/01/h...
statnews.com
HHS starts layoffs of thousands of workers across its agencies
Layoff notices began arriving early Tuesday for thousands of employees of HHS and its subsidiary agencies, with as many 10,000 workers potentially expected to be hit by the cuts.
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Leah Feiger @leahfeiger.bsky.social · 01/04/2025
NEW: The CDC has been gutted this morning. Thousands of CDC employees who worked on things like preventing HIV and lead poisoning have been told they were subject to a reduction in force. Experts say people will die. from me, @makenakelly.bsky.social, @knibbs.bsky.social:
wired.com
The CDC Has Been Gutted
Thousands of CDC employees who worked on things like preventing HIV and lead poisoning have been told they were subject to a reduction in force. Experts say people will die.
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David Corn @davidcorn.bsky.social · 02/04/2025
It’s stunning to me that the New York Times did not put the story on the bloodbath at the NIH, CDC, and FDA on its front page this morning.
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Nellie Kwang @nelliekwang.bsky.social · 12/03/2025
Here's another great talk on #FlowSig, a useful tool for inferring pattern-driving intercellular flows from #scRNA-seq and #spatial-transcriptomics data. This talk was given by Axel Almet, postdoc from the Nie lab, whose work was published in Nature Methods. www.nature.com/articles/s41...
youtu.be
UCI GenPALS 01/23/25 FlowSig for single-cell and spatial transcriptomics
YouTube video by UCI GenPALS
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Nellie Kwang @nelliekwang.bsky.social · 12/03/2025
A plug for the UC Irvine Genomics Practical Applications and Learning Seminar (GenPALS) YouTube channel- lots of useful gems here for fellow bioinformaticians. It's been awesome getting to organize these talks for the #omics researchers at UCI! www.youtube.com/@ucigenpals4...
youtube.com
UCI GenPALS
UCI GenPALS (Genomics Practical Applications and Learning Seminar) is a community of genomics researchers at the University of California, Irvine. We upload videos of our interactive seminars that we ...
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Alexandria Ocasio-Cortez @aoc.bsky.social · 12/11/2024
Earnest post, but: a thing I like here is it’s okay to have moments of happiness in public without being broadly scolded, and I believe that sustaining this kind of humanity will be very important as we resist fascism. We have to sustain each other. Making joy isn’t denial, it’s how we will survive
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Dena Dubal @denadubal.bsky.social · 06/03/2025
"We could all use a little more X!" Thrilled our new study is out. Aging "wakes up" the silent X chromosome in the female brain - and this contributes cognitive resilience. Spearheaded by @margaretgadek.bsky.social in Science Advances. www.science.org/doi/10.1126/...
science.org
Aging activates escape of the silent X chromosome in the female mouse hippocampus
Aging activates the silent X chromosome, increasing escape expression, and potentially cognitive resilience, in the female mouse.
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Andrew Octavian Sasmita @aosasmita.bsky.social · 27/02/2025
Generation of an Inducible Destabilized-Domain Cre Mouse Line to Target Disease Associated Microglia onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com
Generation of an Inducible Destabilized‐Domain Cre Mouse Line to Target Disease Associated Microglia
We developed two mouse strains enabling loxP recombination in either all myeloid cells or inducibly in disease-associated microglia (DAMs). DAMs are a subset of plaque-associated microglia (PAMs)...
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Elizabeth Head, Ph.D. @elizabethhead.bsky.social · 01/03/2025
NIH is rescinding grants focusing on factors related to Alzheimer disease (risk, caregiving, etc) in LGBTQ populations. lgbtqcaregivers.org/rise-registry/. Brilliant scientists and people they care about are being devastated @schiff.senate.gov @altnih4science.bsky.social @jaceflatt.bsky.social
lgbtqcaregivers.org
RISE Registry - LGBTQ Caregiver Center
What is RISE? RISE is a research study being conducted by Emory University, the University of Nevada, Las Vegas, and the University of Tennessee, Knoxville. RISE includes a registry created […]
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Holly Gildea @hollygildea.bsky.social · 21/02/2025
Excited to share our review on astrocyte aging, out today! Hopefully the only Friday surprises this week are Liddelow lab publications! 🧪 #neuroskyence @liddelowsa.bsky.social
molecularneurodegeneration.biomedcentral.com
Mechanisms of astrocyte aging in reactivity and disease - Molecular Neurodegeneration
Normal aging alters brain functions and phenotypes. However, it is not well understood how astrocytes are impacted by aging, nor how they contribute to neuronal dysfunction and disease risk as organis...
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Keri Martinowich @martinowk.bsky.social · 22/02/2025
Updated from the preprint, our paper, "Spatiotemporal analysis of gene expression in the human dentate gyrus reveals age-associated changes in cellular maturation and neuroinflammation" is now published. www.cell.com/cell-reports...
Graphical abstract from the paper depicting the overall study design
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Nature Neuroscience @natneuro.nature.com · 24/02/2025
White matter (WM) #astrocytes differ significantly from grey matter (GM) astrocytes, with WM astrocytes in the forebrain exhibiting unique proliferation capacity 🧪🧠 www.nature.com/articles/s41...
nature.com
Astrocyte heterogeneity reveals region-specific astrogenesis in the white matter - Nature Neuroscience
White matter (WM) astrocytes differ significantly from gray matter astrocytes, with WM astrocytes in the forebrain exhibiting unique proliferation capacity, which is absent in cerebellar WM, suggestin...
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Bonnie Lee @bonniee-leee.bsky.social · 11/02/2025
New publication from my PhD research looking at influences of sex on brain health outcomes in a rodent model of Alzheimer’s disease (AD) risk 🎉: link.springer.com/article/10.1... Big thank you to the best co-authors, @liisagalea.bsky.social, Melike Cevizci, and Stephanie Lieblich 🙏
link.springer.com
Sex-specific influences of APOEε4 genotype on hippocampal neurogenesis and progenitor cells in middle-aged rats - Biology of Sex Differences
Background Alzheimer’s disease (AD) disproportionately and uniquely affects females, and these sex differences are further exacerbated by the presence of Apolipoprotein (APOE) ε4 alleles, the top gene...
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e.w. niedermeyer @niedermeyer.online · 16/02/2025
I feel like I'm going insane every time I see a media story about DOGE that doesn't also mention the fact that the Government Accountability Office exists and performs the exact function that DOGE pretends to, only in a credibly constitutional, non-partisan, and conflict-of-interest-free manner
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Andrew Octavian Sasmita @aosasmita.bsky.social · 18/02/2025
Exquisite study characterizing morphological differences between plaque-associated microglia and coffin-like microglia and their association with astrocytes in AD 😳 link.springer.com/article/10.1...
link.springer.com
Microglia aggregates define distinct immune and neurodegenerative niches in Alzheimer's disease hippocampus - Acta Neuropathologica
In Alzheimer’s disease (AD), microglia form distinct cellular aggregates that play critical roles in disease progression, including Aβ plaque-associated microglia (PaM) and the newly identified coffin...
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