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Miranda

@mfn42.bsky.social
1.7K followers 1.6K following 13 posts

PhD student working on avian influenza | Interested in all things viruses & antiviral immunity | she/her 🔬🧬🦠

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Reposted by Miranda
Colin Carlson @colincarlson.bsky.social · 13h
Very cool new preprint I was very excited to be a VERY small part of, from @viralverity.bsky.social and @nathangrubaugh.bsky.social: "Phylodynamic analysis reveals asymmetric and accelerating global spread of dengue virus" www.biorxiv.org/content/10.6...
Figure 1Figure 4
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Laura Kelley @lauraakelley.bsky.social · 30/09/2026
We used virtual mates and genetic algorithms to ask swordtail fish to design their ideal mate. Males all liked larger females but females did not share a clear preference for male appearance. Led by @kathrynbullough.bsky.social @grahancock.bsky.social in @royalsocietypublishing.org shorturl.at/rCeR2
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Dr George RA Hancock 🦋🦎 @grahancock.bsky.social · 30/09/2026
Woohoo, it's now live! We show, using four lines of evidence, that butterfly wings can create illusory motion effects! @esbriolat.bsky.social, @scienceanna.bsky.social, @lauraakelley.bsky.social, @jtroscianko.bsky.social www.nature.com/articles/s41...
nature.com
Butterfly wing patterns in flight create powerful illusory motion cues - Nature
Butterfly wing patterns and flight dynamics work in tandem to create powerful visual illusions that confuse predators, potentially representing one of the most successful visual defence strategies in ...
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Jolyon Troscianko @jtroscianko.bsky.social · 30/09/2026
🦋 Butterfly wing patterns create motion illusions that protect them from predators! Our new study (8 years in the making) is out in Nature today doi.org/10.1038/s415... @grahancock.bsky.social @esbriolat.bsky.social @scienceanna.bsky.social @lauraakelley.bsky.social @uniexecec.bsky.social
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Daniel Bolnick @danielbolnick.bsky.social · 30/09/2026
We have long known that certain kinds of genes (e.g., immune genes) tend to evolve faster than others. Instead of using gene ontology for this, a new paper by @mariarodgers.bsky.social & team shows that single-cell RNAseq can be a useful way to define gene types for pop gen analyses of selection. /t
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Nucleic Acids Research @narjournal.bsky.social · 29/09/2026
⭐ #NARBreakthrough ⭐ What if we could bring ancient proteins back to life? 🧬 Prof. Stoddard’s lab @fredhutch.org found that ~10% of homing endonucleases remain functional, and ancestral reconstruction reveals how these enzymes evolved new targets. Read the article here: doi.org/10.1093/nar/...
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Jesse Shapiro @bjesseshapiro.bsky.social · 29/09/2026
Our latest, spearheaded by the truly indefatigable @emderrick.bsky.social in which we search for selective sweeps in nature and genetic targets of selection within a species in the context of a diverse background community @isme-microbes.bsky.social doi.org/10.1093/isme... 🧵 1/n
doi.org
Validate User
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Cedric Feschotte @cedricfeschotte.bsky.social · 24/09/2026
Thrilled to see this published today! Truly special because we made the initial discovery >15 yrs ago! We found two copies of a human gene called BC200 embedded in a human poxvirus. BC200 blurs the line between gene & transposon—both functional & mutagenic! www.science.org/doi/10.1126/... 🧵1/n
science.org
Escape of the BC200 gene to a human poxvirus reveals its persistent transposition in primates
Transposable elements mobilize within and occasionally between genomes, including from host to virus. We identified two insertions of the human BC200 noncoding RNA gene in the poxvirus molluscum conta...
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Mike Keesey @tmkeesey.bsky.social · 30/08/2026
We are getting VERY close 13,000 silhouettes! www.phylopic.org/images
phylopic.org
All Silhouette Images on PhyloPic
Browse all the free silhouette images in PhyloPic.
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 24/09/2026
AlphaFold Database is expanding into pandemic preparedness. Together with NVIDIA, DeepMind, EBI et al. we exhaustively predicted ~1.7 million homo- & heterodimers across 2,812 viral proteomes, resulting in 8,028 high-confidence predictions. 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
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Nature @nature.com · 24/09/2026
AlphaFold is being upgraded to better represent some of the least known and deadliest species: viruses go.nature.com/4cZivjx
go.nature.com
AlphaFold 'goes viral': database adds protein complexes of common viruses
AI predictions could help with pandemic preparedness, but they will need experimental confirmation.
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Colin Carlson @colincarlson.bsky.social · 23/09/2026
What's behind this tidal wave of epidemics? In the largest study ever conducted on emerging infectious diseases, we show that the popular explanation - "our relationship with nature is out of balance" - doesn't hold up. Out now in Nature, after half a decade of work: www.nature.com/articles/s41...
nature.com
The anthropogenic fingerprint on emerging infectious diseases - Nature
Emerging infectious disease outbreak risks are ubiquitous worldwide, and highest in landscapes where people, livestock and fragmented natural ecosystems coexist, but detection and data ...
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Louise H. Moncla @lhmoncla.bsky.social · 23/09/2026
Our lab just put out a new preprint! Led by Maria Maltepes, we've been working with @tavisanderson.bsky.social and @alexey-markin.bsky.social to understand how host species impacts the fundamentals of how influenza viruses evolve. TLDR, reassortment and selection rates vary widely across species.
scholar.google.com
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Maya Voichek @mayavoichek.bsky.social · 24/09/2026
Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7)
AI-generated illustration of the soma-to-germline transmission of retrotransposons described in our work
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Anouk Willemsen @willemsenanouk.bsky.social · 24/09/2026
Why did some #viruses #evolve to be giants while others did not? ".. #giantViruses are typical viruses that evolved from smaller ones via accretion of genes recruited from the hosts." doi.org/10.1073/pnas... @mkrupovic.bsky.social & E. Koonin
doi.org
Why did some viruses evolve to be giants while others did not? | PNAS
Viruses are ubiquitous mobile genetic elements that are obligate symbionts of cellular life forms and replicate exclusively within host cells. The ...
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Erik Postma @erikpostma.bsky.social · 23/09/2026
Delighted to see this mammoth effort led by @sevans.bsky.social, together with @mevisser.bsky.social, Arie van Noordwijk and Henri Bouwmeester out in @plosbiology.org.
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Michael Hiller @hillermich.bsky.social · 23/09/2026
Happy to share results of the @bat1kgenomes.bsky.social phase 1, providing reference genomes covering 21 bat families. New insights into bat phylogeny, ancestral genome reconstruction, European origin & ancestral echolocation. Great work by a team of 100+ colleagues www.nature.com/articles/s41...
nature.com
Reference genomes and fossils revise bat family phylogeny and biogeography - Nature
An updated phylogeny of bats is presented, based on new genome assemblies and many ancient fossils and including all known bat families.
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Daniel Fisch @danielhfisch.bsky.social · 23/09/2026
Out now @nature.com! We report a new means of cell communication: receptor-free signal transduction. TLRs engage MyD88 for minutes, yet myddosomes signal for hours. TRAM releases myddosomes from TLRs, letting them mature and sustain signaling in the cytosol. rdcu.be/jGdKxErXyAsa Details below:
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Sonja Vernes @sonjavernes.bsky.social · 23/09/2026
🦇 Bat1K's biggest paper yet is out. Largest bat genome + fossil study ever: 103 genomes, 44 fossils, 137 researchers. We rewrote the bat family tree! Bats likely originated in Europe ~65 million years ago, not Asia, Africa or Americas. @bat1kgenomes.bsky.social doi.org/10.1038/s41586-026-11007-3
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Dimitris Kontopoulos @dgkontopoulos.io · 23/09/2026
Our new Nature paper has just come out! Here, we analyse #genomic and #morphological datasets across all 21 bat families to greatly advance our understanding of how #bats 🦇 evolved. Enjoy! www.nature.com/articles/s41586-026-…
nature.com
Reference genomes and fossils revise bat family phylogeny and biogeography - Nature
An updated phylogeny of bats is presented, based on new genome assemblies and many ancient fossils and including all known bat families.
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Ivan Zanoni @lozanzi.bsky.social · 23/09/2026
#ChangeTheDogma! #TLRpower! @jkagan1.bsky.social @danielhfisch.bsky.social &co show @nature.com that TRAM, so far believed to control endosomal TLR4 signaling & interferon #IFN production, is essential to release the #myddosome from #TIRAP & the plasma membrane allowing full NFkB signaling!
nature.com
TRAM promotes Toll-like-receptor-free myddosome signal transduction - Nature
TRAM is a regulator of myddosome assembly through dissociating MyD88 from the TLR–TIRAP complex to enable myddosome maturation and durable downstream signal transduction.
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Ben Hale @benhale.bsky.social · 21/09/2026
Congrats to Samira Schiefer on her new paper in Science Advances! We analysed 70 natural human IFNB1 variants & found both loss- & gain-of-function IFNβ proteins, revealing unexpected diversity in antiviral immunity. Great effort with Dave Jones & Florence Kwaschik! www.science.org/doi/10.1126/...
science.org
Functional diversity of natural human IFNB1 variants in innate immunity
Human interferon-β (IFN-β), a type I IFN, is critical for effective innate immunity and is also an approved disease-modifying therapeutic. While genetic variations in several components of the type I ...
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Ed Hutchinson @socialinfluenza.bsky.social · 21/09/2026
🚨New paper!🚨 Delighted to have played a small part in this study from Jason Botten's lab (and unusually for us, not on a respiratory virus) on a global map of the Zika virus phosphoproteome
journals.plos.org
A global map of the Zika virus phosphoproteome reveals host-driven regulation of viral particle release and cytopathogenicity
Author summary Zika virus can cause neurological complications and birth defects in humans. The proteins made by viruses are the tools used to hijack human cells to repurpose them into virus productio...
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Daniel Hurdiss @danielhurdiss.bsky.social · 21/09/2026
Excited to share that our norovirus NS3 study is now online in Nature Communications! 🎉 These enzymes, found across an entire order of RNA viruses, have long been molecular motors in search of a function. We think we’ve uncovered their role. (🧵) www.nature.com/articles/s41... #virology #cryoEM
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Ed Hutchinson @socialinfluenza.bsky.social · 21/09/2026
🚨New paper!🚨 As H5N1 #influenza continues to spread among dairy cattle in the USA, we've published a new paper with @prmurcia.bsky.social's group looking at the ability of these viruses to infect bovine mammary epithelia www.microbiologyresearch.org/content/jour...
Immunohistochemistry image showing a section of mammary gland with the epithelial cells stained brown (indicating influenza virus infection) and highlighted with many arrows.
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Sonja Vernes @sonjavernes.bsky.social · 14/09/2026
🦇 One of my favourite reads this week. A study from my brilliant @bat1kgenomes.bsky.social colleague Hannah Frank. Over 500 vesper bat species have TWO sets of antibody genes. Every other mammal only has one. "We've never seen anything like this in a mammal before." www.science.org/doi/10.1126/...
science.org
Immunoglobulin heavy chain locus duplication in bats
Some bats, unlike other mammals, have two functional antibody heavy chain loci that may affect how they respond to pathogens.
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Sonja Vernes @sonjavernes.bsky.social · 07/09/2026
🦇 New Nature paper from @bat1kgenomes.bsky.social colleagues Manny Vazquez & @lauterbur.bsky.social: bat genomes show virus defense, longevity & cancer resistance aren't separate stories — they're part of the same one! Bats really are a roadmap for human health nature.com/articles/s41586-026-10932-7
nature.com
Insights into longevity and virus-driven adaptation from Myotis bat genomes - Nature
Comparative and functional analyses of Myotis bats uncover unique patterns of adaptation in virus-interacting proteins and longevity-associated pathways, linking two hallmarks of bat biology.
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Chuan Ku @chuanku.bsky.social · 15/09/2026
Our new work @fmschu.bsky.social: Giant viruses are widespread environmental pathogens infecting diverse eukaryotes, but most GVs remain uncultured with hosts unknown. GVHoP provides hierarchy-aware host prediction and identifies potential host-determining factors. www.biorxiv.org/content/10.6...
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Daniel Padfield @padpadpadpad.bsky.social · 15/09/2026
I have an MRC-funded PhD project available (gw4biomed.ac.uk/how-does-tem...) on how warming will change the problem of AMR. Join a small and friendly group (padpadpadpad.netlify.app/about) in (sometimes) sunny Cornwall. 🧪🦠 #microsky **Please share** the ad below with anyone who may be interested.
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Chris Ruis @chris3ruis.bsky.social · 14/09/2026
We have a new preprint examining the mutational signatures of hantaviruses: biorxiv.org/content/10.6... We find that mutagens and host antiviral proteins are key factors shaping hantavirus mutagenesis With @andresfloto.bsky.social and @julianparkhill.bsky.social
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Carsten ✨ @carsteneriksen.bsky.social · 09/09/2026
New paper from our group in @natcomms.nature.com. Low-grade systemic #inflammation rises with age. But differs enormously between individuals of the same age. So we tested how much of that variation is explained by chronological age vs gut #microbiota composition and its relation to future disease.
nature.com
Gut microbiota composition outperforms chronological age in predicting systemic inflammation and incident disease risk - Nature Communications
Here, characterizing 1,199 adults, the authors find that gut bacteria patterns predict inflammation and future disease risk better than age, with an identified microbiota type showing signs of “inflam...
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The Ohainle Lab @ohainlelab.bsky.social · 10/09/2026
Very excited to share the first preprint from the Ohainle Lab at UC Berkeley! www.biorxiv.org/content/10.6...
biorxiv.org
CypA is a molecular barrier to HIV emergence from Eastern chimpanzees
Of the two lineages of lentivirus that endemically infect chimpanzees, only one has served as a source of infections in hu-mans. Using HIV-CRISPR screening, we identify factors that limit the replicat...
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Ivan Zanoni @lozanzi.bsky.social · 10/09/2026
New fantastic story by @granuccilab.bsky.social & friends just out @natimmunol.nature.com showing that #mechanosensing of pathogens precedes pattern recognition receptor #PRR activation, and to some extent competes with it! Check it out 👇👇👇
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Jumpei Ito @jampei2.bsky.social · 06/09/2026
New preprint! We show that poxvirus gene repertoires are shaped by expansion-biased birth-and-death dynamics and genome architectural constraints. Led by Arnon Plianchaisuk (@chainorato) in our lab. Please share! (1/10) www.biorxiv.org/content/10.6...
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David Sünderhauf @davvi36.bsky.social · 10/09/2026
Please share! We are looking for a PhD student excited about gene transfer, and tackling Antimicrobial Resistance in Klebsiella pneumoniae. 🧬 More details & applications on funder website by 21st Oct 👇🏻 gw4biomed.ac.uk/developing-c...
gw4biomed.ac.uk
Developing CRISPR-Cas antimicrobials to tackle antibiotic resistance spread in Klebsiella pneumoniae - GW4 BioMed MRC DTP
Project Code IIAR27Ex van Houte Project Type Wet lab Research Theme Infection, Immunity, and Antimicrobial Resistance Project Summary Download Summary Antimicrobial resistance (AMR) poses a major thre...
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European Virus Bioinformatics Center @evbc.bsky.social · 10/09/2026
Herpesvirus mRNAs consistently carry longer poly(A) tails than host and other virus transcripts, suggesting a widespread strategy that may enhance virus gene expression 🧬🦠 #Herpesvirus #RNA #MolecularVirology 📄 doi.org/10.1371/journal.ppat.1014341 👤 EVBC member: Daniel Depledge
doi.org
Extended poly(A) tails are a shared feature of herpesvirus mRNAs
Author summary Poly(A) tails are found on almost all cellular mRNAs and many viral mRNAs, serving as binding platforms for proteins that enhance translation and regulate mRNA stability. In this study, we used a new RNA sequencing approach, nanopore direct RNA sequencing, that allows us to measure poly(A) tails on individual mRNAs during infections by herpesviruses and other DNA and RNA viruses. We found that herpesvirus mRNAs consistently possess longer poly(A) tails than both host and other viral mRNAs, suggesting a widespread and previously unrecognized strategy to enhance viral gene expression. By contrast, coronavirus and poxvirus mRNAs exhibit poly(A) tail lengths comparable to host mRNAs. While non-As are present within some herpesviral poly(A) tails, which could potentially slow poly(A) tail degradation, this “mixed tailing” occurs too infrequently to account for the broadly extended tails observed.
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EARA @eara.eu · 10/09/2026
Tumour-like structures may help #HIV hide from the #ImmuneSystem 🧬 #Researchers found that in #RhesusMonkeys, tissue where an HIV-like virus (SIV) persists resembles “cold” tumours that keep immune cells out - a clue for future HIV #treatments. Learn more: 🔗 shorturl.at/4GKLg #Immunology
eara.eu
EARA | News - Tumour-like structures may help HIV hide from the immune system
Research from the US has found that areas of tissue where an HIV-like virus persists in non-human primates share features with some tumours that are particularly good at keeping immune cells out,…
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Kirsty Wan @micromotility.bsky.social · 17/08/2026
What does a single-celled organism tell us about the origins of complex behaviour? Delighted to see the final version of our paper: Embodied behavioural complexity in a ciliated microorganism out in@natcomms.nature.com (Funded by @erc.europa.eu ERC) doi.org/10.1038/s414... #cilia #protistsonsky
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Magnus Kjærgaard @proteinmagnus.bsky.social · 03/08/2026
Why do intrinsically disordered proteins behave so weirdly during SDS-PAGE? This is the question we aim to answer in our recent paper: onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Sequence determinants of the hypomobility of intrinsically disordered proteins in <fc>SDS</fc>‐<fc>PAGE</fc>
Proteins with intrinsically disordered regions (IDRs) migrate at a higher apparent molecular weight in sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis, complicating their analysis and...
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Trishla Sinha @trishlasinha.bsky.social · 13/08/2026
1/12 After years of work, we are incredibly excited to share our study, published yesterday in @nature.com : “Maternal influences on gut microbiome and health” 🎉🦠 www.nature.com/articles/s41... A thread on what we found 🧵👇
nature.com
Maternal influences on infant gut microbiome and health - Nature
The maternal gut microbiome is a predictor of infant eczema.
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Mark A. Hanson @hansonmark.bsky.social · 14/08/2026
HIRING MICROBIOLOGIST: effective start asap! The PDRA/PDRF (per xp) will investigate the interactions of bumblebee antimicrobial peptides (AMPs) with the gut microbiota & more. Our work has shown AMPs have striking specificity for ecological microbes. careers.exeter.ac.uk/vacancies/13... 1/2
careers.exeter.ac.uk
Postdoctoral Researcher Associate or Fellow in Cornwall | University of Exeter
View details and apply for this Postdoctoral Researcher Associate or Fellow vacancy in Cornwall. Postdoctoral Research Associate / Fellow This job is part of an Advanced Research + Inventio...
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Harmit Singh Malik @harmitmalik.bsky.social · 13/08/2026
MxA is one of the broadest antiviral proteins mammals make. It’s a big reason most bird flu strains never get a foothold in people. The rare ones that succeed have learned to dodge it. How MxA actually recognizes viral targets at the molecular level is unknown for a bunch of technical reasons.
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Harmit Singh Malik @harmitmalik.bsky.social · 13/08/2026
We used structural modeling + minigenome assays to get our first look at this critical host-virus interface. Great collaboration between MSTP student Megan Levy (our lab) & postdoc America Chi in @jagdishpatel.bsky.social’s lab at U Idaho. Preprint online now: www.biorxiv.org/content/10.6...
Model of how a critical loop of MxA interacts with the nucleoprotwin (NP) of Thogotovirus, which is distantly related to influenza
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Carl Zimmer @carlzimmer.com · 12/08/2026
A new study suggests that the current Bundibugyo epidemic is a new spillover from an animal host--not a resurgence of human cases from the two previous human outbreaks. www.nature.com/articles/s41...
nature.com
Emergence of a Bundibugyo virus variant in the 2026 outbreak in the Democratic Republic of the Congo and Uganda - Nature Medicine
A phylogenetic analysis of 22 genomes from the recent Bundibugyo virus outbreak in the Democratic Republic of the Congo and Uganda suggests the outbreak was caused by a new zoonotic spillover event.
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Julia Meltzer @juliameltzer.bsky.social · 13/08/2026
Excited to share what I've been working on with an incredible team! Visualisation of Asgard viruses on cell surfaces and vesicles, and a story of complex viral interactions. Preprint: www.biorxiv.org/content/10.6... @brendanburns999.bsky.social @belindaferrari.bsky.social @xabivc.bsky.social
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Freya Harrison @friendlymicrobe.bsky.social · 10/08/2026
Absolutely stunning dual RNAseq/imaging work by @andresfloto.bsky.social & colleagues: subpopulations of P. aeruginosa with different transcriptomes exist in different niches (airway lumen, glands, blood vessels) in explanted #CysticFibrosis lungs 🤯 #MicroSky www.biorxiv.org/content/10.6...
Images of H&E stained slices through bronchiole and surrounding tissue, overlaid with coloured spots showing where expression of different P. aeruginosa transcripts was detected. Transcripts are detected throughout the large mucus plug in the lumen, and also to a lesser extent in the surrounding tissue.
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Michelle Wille @duckswabber.bsky.social · 12/08/2026
Analysis of the first two HPAI genomes from WA - shows independant incursions and that viruses are most closely related to those from Heard Island. 👉 www.biorxiv.org/content/10.6...
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Ady Ragucci @aragucci.bsky.social · 12/08/2026
Excited to share our story on diadenylate cyclases in bacterial immunity! Building on the discovery of Panoptes, we present Panoptoo: a DAC operon that uses cUA to guard against phage infection. Grateful to @daniellehaley.bsky.social and @kranzuschlab.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial diadenylate cyclase domains synthesize diverse nucleotide signals in anti-phage defense
Bacterial diadenylate cyclase (DAC) enzymes synthesize the nucleotide signal 3′3′ cyclic di-AMP (3′3′-c-di-AMP) to control osmoregulation, cell-wall homeostasis, and DNA-damage responses. Here we disc...
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Today we are excited to introduce you to PanDA 🐼🐼🐼, a newly uncovered antiphage system!! Attendees at @SISB2026 would have heard a little about this from graduate student Ali Nabhani back in May, but we are now out here in preprint form and delighted to share more of the details. (Thread below)
biorxiv.org
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion
Many bacterial immune defenses transmit recognition of phage infection via the generation of diverse cyclic nucleotide second messengers. Phage have evolved to subvert this kind of immunity by sequest...
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