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Francesco Scavone

@fscavone.bsky.social
972 followers 588 following 40 posts

Biology @Stanford | Kopito lab | ubiquitin & UBLs, UFM1, ribosome, protein quality control, autophagy, endoplasmic reticulum | Foodbank volunteer | 🐘:@scavone@mas.to 📷: Sicilian landscape

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Reposted by Francesco Scavone
Cell Biology J-Club @cellclub.bsky.social · 06/08/2026
www.nature.com/articles/s41...
nature.com
α-Synuclein blocks endoplasmic reticulum co-translational protein translocation early in Parkinson’s disease - Nature Communications
Proteomic and transcriptomic profiling on hiPSC-derived midbrain dopaminergic neurons with pathological α-synuclein burden reveals defective Sec61A interactions and co-translational translocation of E...
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Reposted by Francesco Scavone
Clausen Lab @clausenlab.bsky.social · 21/05/2026
Open Postdoc Position - Giant E3 ligases: mysterious mechanisms & non‑protein substrates. Interested? Join us to uncover how these molecular giants tag lipids, RNAs, sugars beyond proteins, on organelles and pathogens, to defend the cell. Details & Application here www.imp.ac.at/career/open-...
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Francesco Scavone @fscavone.bsky.social · 12/05/2026
Very useful commentary on ribosome heterogeneity and specialization from the Karbstein's group: rupress.org/jcb/article/...
rupress.org
A deep dive into functional ribosome specialization
Park et al. describe problems that plague the analysis of ribosome specialization, as well as ways to address them to guide experimentation in the field.
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Reposted by Francesco Scavone
Behnam Nabet @behnamnabet.bsky.social · 17/04/2026
Proud to share our latest paper in @rscchembio.rsc.org, where we tackle oncogenic TRK fusions. Together, @sauravk05.bsky.social and Jiewei Jiang develop potent and selective degraders of the TPM3-TRKA fusion, a key cancer driver. pubs.rsc.org/en/content/a...
pubs.rsc.org
Development of PROTACs for targeted degradation of oncogenic TRK fusions
Chromosomal translocations leading to the fusion of tropomyosin receptor kinases (TRKs) with diverse partner proteins have been identified as oncogenic drivers in many adult and pediatric cancers. Whi...
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Reposted by Francesco Scavone
Yogesh Kulathu @kulathu.bsky.social · 27/03/2026
Registration now open! 2026 #EMBO #Ubiquitin Workshop set in stunning Monopoli, Puglia 🇮🇹 Cutting edge science, great speakers, short talk opportunities, travel awards Limited spaces. Dont miss out - register early! Registration & more info: meetings.embo.org/event/26-ubi...
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Reposted by Francesco Scavone
Yasin Dagdas @plantophagy.bsky.social · 25/03/2026
Congrats Milica @alessandrick.bsky.social & everyone @gekaragoz.bsky.social lab. Glad we could contribute to this awesome story on #UFMylation & #RQC crosstalk @embojournal.org link.springer.com/article/10.1...
link.springer.com
The coordinated action of UFMylation and the RQC pathways clears arrested polypeptides at the ER - The EMBO Journal
Clearance of arrested nascent polypeptides resulting from ribosomal stalling is essential for proteostasis. Stalled endoplasmic reticulum (ER)-bound ribosomes are marked by ubiquitin-fold modifier 1 (...
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Reposted by Francesco Scavone
Elif Karagöz @gekaragoz.bsky.social · 25/03/2026
Our work on the role of Ufmylation on ribosome quality control on the ER is out! Great work of two terrific first authors Milica and @alessandrick.bsky.social together with our wonderful collaborators, the one and only Dagdas lab @plantophagy.bsky.social!
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Reposted by Francesco Scavone
James Olzmann @olzmannlab.bsky.social · 13/03/2026
1/3 Thrilled to see our paper led by Kirandeep Deol is out in Nature Structural & Molecular Biology! CRISPR screens to uncover a role for vitamin B2 metabolism in stabilizing FSP1 via FAD, revealing a new way vitamins regulate ferroptosis. www.nature.com/articles/s41...
nature.com
Vitamin B2 metabolism promotes FSP1 stability to prevent ferroptosis - Nature Structural & Molecular Biology
Here, Deol et al. use genetic screens in gene-edited reporter cell lines to identify regulators of ferroptosis suppressor protein 1 (FSP1) expression and stability. They show that vitamin B2 metabolis...
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Reposted by Francesco Scavone
Pedro Friedmann Angeli @angelifriedmann.bsky.social · 13/03/2026
Happy to share the final version of the study where we describe a central role for vitaminB2 in regulating membrane redox state - some new cool experiments were added since the preprint was posted - pls check this out thttps://www.nature.com/articles/s41556-025-01856-x
nature.com
Riboflavin metabolism shapes FSP1-driven ferroptosis resistance - Nature Cell Biology
After performing a focused CRISPR–Cas9 screen, Skafar et al. identify riboflavin (vitamin B2) as a regulator of FSP1 stability that modulates phospholipid peroxidation and ferroptosis sensitivity in c...
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Reposted by Francesco Scavone
Jordy F. Botello @jbotello.bsky.social · 10/03/2026
Some molecular machines, like ribosomes, can persist for long periods of time in cells. Could molecular aging of ribosomes shape how proteins are made? In our new preprint we track ribosomes as they age in cells and uncover unexpected effects on translation (1/10) www.biorxiv.org/content/10.6...
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Reposted by Francesco Scavone
Leo Kiss @leokiss.bsky.social · 05/03/2026
I am incredibly excited to share that I will start my independent lab at the @unidue-zmb.bsky.social at the @unidue.bsky.social as Junior Professor of Cellular Biochemistry. Research in my lab has the goal to decipher the ubiquitin code! There are multiple open positions! (1/3)
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Reposted by Francesco Scavone
James Olzmann @olzmannlab.bsky.social · 25/02/2026
Sooo happy to share our new paper in @nature.com “CLCC1 promotes hepatic neutral lipid flux and nuclear pore complex assembly.” A terrific collaboration with @arrudalab.bsky.social, led by co–first authors Alyssa Mathiowetz and Emily Maymand. www.nature.com/articles/s41...
nature.com
CLCC1 promotes hepatic neutral lipid flux and nuclear pore complex assembly - Nature
CRISPR–Cas9 screening identifies CLCC1 as a factor that increases neutral lipid flux to prevent hepatic steatosis and promotes nuclear pore complex assembly by promoting membrane bending and fusi...
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Reposted by Francesco Scavone
Yasin Dagdas @plantophagy.bsky.social · 23/02/2026
Really happy to see this one out: www.sciencedirect.com/science/arti... Alibek's drive & great coll w/ friends @gekaragoz.bsky.social & E. Hallacli resulted in a cool story that starts with our beloved #Marchantia and ends with iPSC-derived neurons 🤩🤪 A short 🧵
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Reposted by Francesco Scavone
Luis Bonet-Ponce @lysoluis.bsky.social · 21/02/2026
Quick proteomics question: we want to use an exogenous biotin blocking scavenger for a TurboID experiment. We tried Biolock but is very inconsistent in our hands. Does anyone have another suggestion?
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Reposted by Francesco Scavone
Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 17/02/2026
We posted a biorxiv preprint on structural bioinformatics, AlphaFold modeling & machine learning on predicting specificity of E3 ligase ring domains for different E2 enzymes. 1/4 Preprint: www.biorxiv.org/content/10.6... Models/data (UbiqCore website): dunbrack.fccc.edu/ubiqcore
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Reposted by Francesco Scavone
Mara Mueller @muellermara.bsky.social · 19/02/2026
Mammalian cells form hibernating disomes akin to those in bacterial cells - but connected via ribosomal RNA www.science.org/doi/10.1126/... co-first with: @andschwarz.bsky.social with: @lea-dietrich.bsky.social, @sgiando.bsky.social, @erin-schuman.bsky.social and many more 🧵 0/6 #MolBio 🧪
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Reposted by Francesco Scavone
Robert Arkowitz @robertarkowitz.bsky.social · 19/02/2026
www.science.org/doi/10.1126/...
science.org
Ribosomal RNA expansion segments mediate the oligomerization of inactive animal ribosomes
Cells down-regulate protein synthesis when stressed to conserve energy and shift resources toward repair. We found that in some mammalian cells, including neurons, stress also resulted in the formatio...
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Francesco Scavone @fscavone.bsky.social · 16/02/2026
Such a pleasure to share our commentary on #UFMylation client diversity published in @natrevmcb.nature.com. Thanks to @lisaheinke.bsky.social for the opportunity to write it, reviewers for their peer review contribution, and members of our lab for discussions. Link: www.nature.com/articles/s41...
nature.com
Evaluating evidence for UFMylation client diversity - Nature Reviews Molecular Cell Biology
The small ubiquitin-like modifier UFM1 is known to regulate the ribosomal subunit RPL26, but whether other bona fide substrates exist remains debated. This Comment discusses criteria for the experimen...
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Reposted by Francesco Scavone
Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 16/02/2026
New Online! Evaluating evidence for UFMylation client diversity
dlvr.it
Evaluating evidence for UFMylation client diversity
Nature Reviews Molecular Cell Biology, Published online: 16 February 2026; doi:10.1038/s41580-026-00951-7The small ubiquitin-like modifier UFM1 is known to regulate the ribosomal subunit RPL26, but whether other bona fide substrates exist remains debated. This Comment discusses criteria for the experimental validation of UFM1 substrates.
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Reposted by Francesco Scavone
Yasin Dagdas @plantophagy.bsky.social · 16/02/2026
@hanhtkvu.bsky.social @embl.org & we are looking for a #postdoc to study #regeneration x #autophagy across kingdoms of life. Pls spread the word & get in touch if you are interested www.health-life-sciences.de/opportunitie...
health-life-sciences.de
HEALTH + LIFE SCIENCE ALLIANCE | Interinstitutional Postdocs
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Reposted by Francesco Scavone
Proteostasis UK @proteostasisuk.bsky.social · 13/02/2026
📣 UK Proteostasis Meeting 2026 – Registration Now Open! I’m delighted to share that registration is now open for the UK Proteostasis Meeting 2026, hosted by The Francis Crick Institute on 20–21 July 2026
. Please register here(lnkd.in/ervXMzWN) and through Eventbrite for payment (lnkd.in/eTxqjnQy)
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Reposted by Francesco Scavone
Nature @nature.com · 11/02/2026
Nature research paper: CSN5i-3 is an orthosteric molecular glue inhibitor of COP9 signalosome go.nature.com/4kwdCRy
go.nature.com
CSN5i-3 is an orthosteric molecular glue inhibitor of COP9 signalosome - Nature
An orthosteric CSN inhibitor gains nanomolar potency via a molecular-glue mechanism, stabilizing a CSN5–N8–inhibitor complex that confers substrate-dependent inhibition despite weak free-enzyme affinity.
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Reposted by Francesco Scavone
The EMBO Journal @embojournal.org · 11/02/2026
Yeast ubiquilin Dsk2 scaffolds proteasome-containing condensates under stress via multivalent interactions – @castanedalab.bsky.social et al show how dynamic interactions among its STI1 domain & transient helices in its disordered region promote its phase-separation link.springer.com/article/10.1...
link.springer.com
STI1 domain engages transient helices to mediate Dsk2 phase separation and proteasome condensation - The EMBO Journal
Ubiquitin-binding shuttle proteins are important components of stress-induced biomolecular condensates in cells. Yeast Dsk2 scaffolds proteasome-containing condensates via multivalent interactions wit...
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Reposted by Francesco Scavone
Haselbach Lab @haselbachlab.bsky.social · 11/02/2026
And a new paper from the lab. A follow up to a previous study in which we elucidate the mechanism of the nuclear transport. Read the full story: www.nature.com/articles/s41...
nature.com
A multivalent adaptor mechanism drives the nuclear import of proteasomes - Nature Communications
Nuclear protein homeostasis relies on proteasome import into the nucleus. Here the authors identify how assembled human proteasomes are transported across the nuclear pore complex and reveal a mechani...
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Reposted by Francesco Scavone
Niko Dalheimer @niko-dalheimer.bsky.social · 05/02/2026
I’m excited to share my first-author paper, with co-first author @rongqinxiaoxiao.bsky.social, now out in @nature.com. We developed a live-cell single-particle tracking platform to see how TRiC & prefoldin engage proteins during co- and post-translational folding. 1/9 www.nature.com/articles/s41...
nature.com
Single-molecule dynamics of the TRiC chaperonin system in vivo - Nature
Single-particle tracking experiments in intact cells reveal dynamic co- and post-translational interactions of the TRiC–PFD chaperonin complex with client proteins during in vivo protein folding.
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Reposted by Francesco Scavone
Marie Winz @mariewinz.bsky.social · 01/02/2026
🚀 Just published: New1 shields mRNAs from no-go decay — by preventing ribosome crashes at specific codons. What’s new? New1 (eEF3 homolog) stops ribosomes from stalling at C-terminal AAA/AGG/CGU codons. No New1 = collisions + Hel2 recruitment + Cue2-mediated no-go decay.
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Reposted by Francesco Scavone
Juan S. Bonifacino @juanbonifacino.bsky.social · 29/01/2026
Structure of the adaptor protein 4 (AP-4) complex revealed! AP-4 exists in a dynamic equilibrium between closed and open conformations in solution. ARF1 does not shift this equilibrium but is required—together with cargo—for membrane recruitment. rdcu.be/e1ozM
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Reposted by Francesco Scavone
asamelson @asamelson.bsky.social · 28/01/2026
After a long review process, I'm excited that our paper is finally in print: www.cell.com/cell/fulltex... TL;DR: We use CRISPR screens in iPSC-derived neurons to find a new tau E3 ligase and a relationship between oxidative stress, the proteasome, and tau proteolytic fragments. More below 👇
cell.com
CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis
CRISPR screens in iPSC-derived neurons reveal that the E3 ubiquitin ligase CRL5SOCS4 ubiquitinates tau, that CUL5 expression is correlated with resilience in human Alzheimer’s disease, and that electr...
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Reposted by Francesco Scavone
Martin Kampmann @kampmann.bsky.social · 28/01/2026
Our paper is (finally) out in Cell today! CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis www.cell.com/cell/fulltex... Great collaborative effort - read more from first author @asamelson.bsky.social below:
cell.com
CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis
CRISPR screens in iPSC-derived neurons reveal that the E3 ubiquitin ligase CRL5SOCS4 ubiquitinates tau, that CUL5 expression is correlated with resilience in human Alzheimer’s disease, and that electr...
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Reposted by Francesco Scavone
Yasin Dagdas @plantophagy.bsky.social · 11/01/2026
A very nice #review on #UFMylation from the giants of the field: The mechanistic basis and cellular functions of UFMylation www.nature.com/articles/s41...
nature.com
Client Challenge
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Reposted by Francesco Scavone
Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 09/01/2026
New Online! The mechanistic basis and cellular functions of UFMylation
dlvr.it
The mechanistic basis and cellular functions of UFMylation
Nature Reviews Molecular Cell Biology, Published online: 09 January 2026; doi:10.1038/s41580-025-00944-yUFMylation, a ubiquitin-like modification, regulates endoplasmic reticulum-associated ribosome quality control by conjugating UFM1 to the ribosomal subunit RPL26, preserving ribosome integrity under stress. This Review explores the structural basis of UFMylation and its emerging functional breadth, and it discusses putative UFMylation substrates.
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Reposted by Francesco Scavone
The Australian Ubiquitin Summit @ausub.bsky.social · 17/12/2025
‼️Towards the end of #AusUb25, we caught up with Jonathan Pruneda to discuss ubiquitin signalling and its relationship with host-pathogen interactions. It was an amazing conference and such a great chance to meet people from across the ubiquitin field 🤩
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Elodie Lafont @elodie-lafont.bsky.social · 22/09/2025
Out in @febsj.bsky.social, comment written with @tonyavril.bsky.social from @csignaling.bsky.social. doi:10.1111/febs.70259 The SARS-CoV-2 spike protein interacts with HAX1 to modulate cellular stress responses through activation of the UPR
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David Balchin @davidbalchin.bsky.social · 19/09/2025
Our article on human multidomain protein biogenesis is now published in @natsmb.nature.com www.nature.com/articles/s41...
nature.com
The human ribosome modulates multidomain protein biogenesis by delaying cotranslational domain docking - Nature Structural & Molecular Biology
By studying dynamic folding intermediates on the human ribosome, Pellowe et al. show that newly made domains help each other to fold but do not stably interact until synthesis is complete, avoiding in...
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American Society for Cell Biology @ascbiology.bsky.social · 10/09/2025
From MBoC... Dr. Francesco Scavone (Stanford) shows ATG9A has an unexpected role in trafficking K63-polyubiquitin–modified membrane proteins. Blocking the signal traps cargos in vesicle clusters; once released, they rapidly reach lysosomes. 🔗 www.molbiolcell.org/doi/10.1091/... #ASCB #CellBiology
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Elias Adriaenssens @elias-adriaenssens.bsky.social · 13/08/2025
Absolutely honoured to see our work featured on this month’s cover! 🎉🧬 Artwork by the incredibly talented @doroteaartscience.bsky.social 👇
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Böke Lab @bokelab.bsky.social · 18/07/2025
Proud to share what we hope will be a reference study on human oocyte proteostasis. Young-donor eggs show globally reduced organelle activity vs. somatic cells, with an even steeper drop as they mature. 👇 for @zaffagg3 's detailed explanation www.embopress.org/doi/full/10....
embopress.org
The proteostatic landscape of healthy human oocytes | The EMBO Journal
imageimageOocytes are long-lived cells that require specialized adaptations to maintain their fitness. This study shows that human oocytes display low lysosomal, proteasomal, and mitochondrial activity, which declines further during oocyte ...
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Karolin Luger @nucleosomepolice.bsky.social · 17/07/2025
#cryoEM confluence in Munich #womeninSTEM
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Karolin Luger @nucleosomepolice.bsky.social · 27/06/2025
new preprint alert from the lab: bringing some order into the wide and wild diversity of archaeal histones. Who has acidic histones? who has multiple histones? what histone combinations do archaea employ and why? find all of this and more here www.biorxiv.org/content/10.1...
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Jim Hurley @jimhurley.bsky.social · 25/06/2025
The ESCRT complexes are a fascinating membrane cutting machine with roles in countless cell pathways, but they are also ubiquitous in disease and offer new opportunities as drug targets. See our new review with Alyssa Coyne, Marta Miączyńska, and Harald Stenmark at tinyurl.com/yex3trem
tinyurl.com
The expanding repertoire of ESCRT functions in cell biology and disease - Nature
This Review examines recently gained insights into the roles of ESCRT complexes in viral infection, immunity, cancer and neurological disease.
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Reposted by Francesco Scavone
Ahmad Jomaa @jomaalab.bsky.social · 16/06/2025
Check out our latest preprint with the Qi lab on the structure and disease physiology of the human ERAD complex. Outstanding work by Leo, a cell physiologist whom we successfully tempted into structural biology! Preprint: www.biorxiv.org/content/10.1...
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Francesco Scavone @fscavone.bsky.social · 15/06/2025
Highlight on our recent work on UFMylation by @dimitristypas.bsky.social on @NatureSMB: www.nature.com/articles/s41...
nature.com
UFMylation-dependent quality control of ER-stalled ribosomes - Nature Structural & Molecular Biology
Nature Structural & Molecular Biology - UFMylation-dependent quality control of ER-stalled ribosomes
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Sonya Neal @neal-lab.bsky.social · 12/06/2025
Huge thanks to @gthibault.bsky.social and Julie Hollien for organizing a warm, welcoming FASEB ER meeting filled with incredible science! Excited that I will carry the torch as a co-organizer for the 2027 meeting….can’t wait! @faseborg.bsky.social
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Francesca Mattiroli @fmattiroli.bsky.social · 12/06/2025
We are excited to get on this project and learn more about chromatin organization! Great to share this good news with Ina and Matilde, congrats everyone!
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James Olzmann @olzmannlab.bsky.social · 29/05/2025
Thrilled this paper is out! We solved the first cocrystal structure of FSP1 with an inhibitor (FSEN1), providing mechanistic insight & a foundation for medchem. Led by Amalia Megarioti & Sitao Zhang. A terrific collaboration with Da Jia. Brief Skytorial! 1/9
pnas.org
Cocrystal structure reveals the mechanism of FSP1 inhibition by FSEN1 | PNAS
FSP1 is an FAD-dependent oxidoreductase that uses NAD(P)H to regenerate the reduced forms of lipophilic quinone antioxidants, such as coenzyme Q10 ...
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Amit Joshi @joshilaboratory.bsky.social · 23/05/2025
Excited to present first publication from the Joshi lab, now in @jcb.org Here, we show that phosphatidic acid regulates Pex30 distribution at ER subdomains for lipid droplet biogenesis by binding to dysferlin domain. rupress.org/jcb/article/...
rupress.org
Phosphatidic acid drives spatiotemporal distribution of Pex30 at ER-LD contact sites | Journal of Cell Biology | Rockefeller University Press
In this study, we show that Pex30 dysferlin domain binds PA through its two hydrophobic regions adjacent to beta sheets. We propose that, PA, a precursor f
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MolinariLab-ER @molinarilab-er.bsky.social · 22/05/2025
Dan, a friend for many of us, passed at the end of last year. Before leaving, with his students and colleagues, he prepared this gift. Amazing. N-glycan-dependent protein maturation and quality control in the ER | Nature Reviews Molecular Cell Biology www.nature.com/articles/s41...
nature.com
N-glycan-dependent protein maturation and quality control in the ER - Nature Reviews Molecular Cell Biology
N-glycosylation of secretory pathway proteins in the ER is crucial for their maturation and quality control. Recent insights into the enzymes and chaperones that facilitate N-glycosylation have expand...
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Francesco Scavone @fscavone.bsky.social · 02/05/2025
New paper from our lab! 🥳🎉 "UFMylation orchestrates spatiotemporal coordination of RQC at the ER" @Science Advances www.science.org/doi/10.1126/...
science.org
UFMylation orchestrates spatiotemporal coordination of RQC at the ER
Structures of stalled ER-bound 60S ribosomal subunits identify cooperative interaction between UFMylation and RQC machineries.
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James Olzmann @olzmannlab.bsky.social · 26/04/2025
Happy to have contributed in a small way to this exciting study from Daniel Nomura identifying a new covalent degrader handle that acts through the dcaf16 E3 ligase! 🤩
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