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Denis Krndija

@deniskrndija.bsky.social
503 followers 793 following 61 posts

new group leader @CBIToulouse | MechanoGut team | ATIP-Avenir | fascinated by the dynamics and mechanics of the #gut 🐭⚙️🔬| he/his/him 🏳️‍🌈 Lab: cbi-toulouse.fr/en/equipe/krndija-en Personal: cbi-toulouse.fr/en/membre/krndija-d…

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Denis Krndija @deniskrndija.bsky.social · 22/09/2026
A happy update to this preprint: our work is now published in Nature Communications! Fair and transparent peer review genuinely made the paper stronger – many thanks to the reviewers for pushing us to go deeper into the mechanics 🔩⚙️ www.nature.com/articles/s41...
nature.com
Goblet cells mechanically breach the epithelial barrier in gut homeostasis - Nature Communications
This study shows that goblet cells physically compress neighboring intestinal cells, creating fractures in cell–cell junctions that weaken epithelial cohesion, increase gut permeability and reveal how...
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Kate Cavanaugh @katecavanaugh.bsky.social · 10/09/2026
Absolutely ecstatic to share that WE GOT THE COVER!!! 🥹🎉 Seeing this on NCB's cover feels surreal. So much time, science, and teamwork went into this project, and I couldn’t be more excited to see it celebrated like this. A very, very happy day for this really really old and grown embryo 🐭🧫💥
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Journal of Cell Science @jcellsci.bsky.social · 13/08/2026
Why choose JCS? Here's just one reason 👇 You can find out more at: journals.biologists.com/jcs/pages/re... #notforprofit #forscientistsbyscientists
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CNRS Biologie @cnrsbiologie.bsky.social · 30/07/2026
#ResultatScientifique🔎| Comment la forme des cellules façonne l’intestin ? Une étude révèle le rôle des forces mécaniques dans la protection de cette barrière ▶️ buff.ly/ph86JyC ✍️ @deniskrndija.bsky.social 📕 @natcomms.nature.com 🤝 @cnrs.fr @cbitoulouse.bsky.social
buff.ly
Quand la forme des cellules fragilise la barrière intestinale
L’intest
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Centre for Integrative Biology @cbitoulouse.bsky.social · 04/06/2026
🏳️‍🌈 This June, CBI celebrates LGBT+ Pride Month. To all LGBT+ members of our community: ❤️ You are welcome here. 🧡 You belong here. 💛 You are valued here. 💚 We stand with you. Posters, quiz and a convivial Pride apéro coming soon at CBI! #PrideMonth #LGBTinSTEM
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Bertrand Benazeraf @bertrandbenazeraf.bsky.social · 17/02/2026
Group Leader Call at the @cbitoulouse.bsky.social in Genome biology, projects at the interface with devbio will be given particular attention. please share :) cbi-toulouse.fr/wp-content/u...
cbi-toulouse.fr
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Alejandro Torres-Sánchez @torres-sanchez.bsky.social · 12/02/2026
Development builds... But it also breaks! Planarians split to reproduce. Hydra tears open a mouth. Embryos fracture to make cavities. Failure? No. Fracture is essential to development. Our new review on fracture physics and its uses in development: journals.biologists.com/dev/article/...
journals.biologists.com
Break to build: fracture as a unifying morphogenetic strategy
Summary: This Review presents mechanical fracture as a unifying morphogenetic strategy and describes how developmental systems actively exploit mechanical fracture to drive morphogenesis, reproduction...
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Sara Wickstrom @sarawickstrom.bsky.social · 10/02/2026
Excited to share our work on epithelial multilayering - identifying why stem cell stay in the basal layer and how and why differentiating cells move up. Great collab with @manningresearch.bsky.social and Niessen labs! Check out preprint and great summary below www.biorxiv.org/content/10.6...
biorxiv.org
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Benoit Ladoux @bladoux.bsky.social · 26/01/2026
Happy to highlight our collaborative work from our @ijmonod.bsky.social team with @destriano.bsky.social, B. Goyeau and M. Chabanon. Cytoplasmic crowding acts as a porous medium that hinders macromolecular diffusivity. Plus: a clever way to measure cell volume. www.pnas.org/doi/10.1073/...
pnas.org
Cytoplasmic crowding acts as a porous medium reducing macromolecule diffusion | PNAS
Intracellular transport of macromolecules is crucial for the proper functioning of most cellular processes. Although intracellular crowding is know...
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Gloerich lab @gloerichlab.bsky.social · 16/12/2025
Paper alert! β-catenin forms condensates that help build cell–cell adhesions - showing its role goes beyond simply linking E-cadherin to α-cat/actin. Great collaboration with the Schuijers lab! 👉 nature.com/articles/s41...
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Christophe Le Clainche @actin-paris-saclay.bsky.social · 02/01/2026
New paper out! We show how mechanosensitive adherens junction proteins link actomyosin contractility to actin assembly using in vitro reconstitution. Huge congrats to Aurélie Favarin, Rayan Said, & all authors! In Science Advances: www.science.org/doi/10.1126/... #actin #myosin #mechanobiology
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Pablo J. Sáez @pjsaez.bsky.social · 01/01/2026
#HappyNewYear ! Let's start 2026 with a @cellcommlab.bsky.social paper How many branches is OK during #CellMigration? It depends on the #cell: for ex. immune cells are just fine. In collab. w. #NirGov @hfspo.bsky.social Full www.science.org/doi/10.1126/... @focalplane.bsky.social @science.org 🧪🔬
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Denis Krndija @deniskrndija.bsky.social · 12/12/2025
Good times at our traditional Christmas team lunch today 🎄🥂 It was a year full of exciting results, marked by our first PhD student graduating and two preprints published! Very grateful for this team and all that we’ve achieved together over the past four years. Looking forward to what’s next! 🙏✨
Christmas lunch of team Krndija
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SFBD_BioDev @sfbd.bsky.social · 10/11/2025
🚨🚨🚨 The SFBD board needs to be renewed with 5 members We wish to strengthen our board with young scientists To apply: send a brief text introducing your research interests and motivations to sfbd@sfbd.fr by December 4th Elections will be held online from December 10th to 17th Please share the info
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Gloerich lab @gloerichlab.bsky.social · 07/11/2025
We finally made it over here ! And excited to share our new paper on mechanical forces regulating stem cell plasticity in colorectal cancer, involving force transduction via mechanosensitive calcium channels! www.cell.com/cell-reports...
cell.com
Mechanosensitive calcium channels and integrins coordinate the reprogramming of colorectal cancer cells into a fetal-like state
van der Net et al. show that mechanical interactions with the stromal component collagen I trigger reprogramming of colorectal cancer cells into a fetal-like state, through mechanosensitive integrins ...
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Denis Krndija @deniskrndija.bsky.social · 04/11/2025
Great opportunity - check it out!👇🤩
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Emma Rawlins @labrawlins.bsky.social · 11/10/2025
Delighted that Ziqi Dong's PhD paper is out for all to read! Hypoxia is fundamental to normal development, and fascinating! Thanks to all of our co-authors including @jamesnathanlab.bsky.social @jellevda.bsky.social authors.elsevier.com/sd/article/S...
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Audrey Ferrand @ferrandlab.bsky.social · 08/08/2025
📢Si vous êtes passionné.e par les cellules souches, la régénération tissulaire avec un intérêt pour les pathologies intestinales mais aussi la microfluidique, et vous voulez participer au programme national PEPR MED-OOC, cette offre de thèse est pour vous: www.adum.fr/sujetT?id=67...
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Audrey Ferrand @ferrandlab.bsky.social · 11/10/2025
🔬 Postdoctoral Opportunity in Biomedical Research. #Organoids & #Organs-on-Chip for #IBD and #Personalized #Medicine at #i2mc in #Toulouse, #France at the crossroads of #stem cell biology, #microphysiological systems, and translational medicine. 👉 Apply before Nov. 1rst at audrey.ferrand@inserm.fr
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David Brückner @davidbrueckner.bsky.social · 27/09/2025
How do cells navigate up gradients of adhesive proteins? 🤔 Termed "Haptotaxis", this effect is ubiquitous in cell migration, but it's mechanism was poorly understood We show that passive friction directs cells & explains complex trajectories on gradients 👉 www.nature.com/articles/s41...
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Denis Krndija @deniskrndija.bsky.social · 08/10/2025
Ever wondered how adult organs preserve epithelial barrier integrity while continuously exposed to mechanical stress? We tackled this question in our new preprint – led by our brilliant PhD student Vishnu Krishnakumar! (1/11) 🔗 www.biorxiv.org/content/10.1...
biorxiv.org
Robust pan-junctional reinforcement preserves the gut epithelial barrier under mechanical stress
Epithelia are specialized tissue barriers that safeguard the organism's internal milieu from the hostile external environment, a function critically dependent on intercellular junctions. In the colon,...
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Bardin Lab @bardinlab.bsky.social · 07/10/2025
The PhD work of @bboumard.bsky.social officially out in print! Happy to share this issue with our downstairs colleagues in the BDD @frelab.bsky.social @robinjournot.bsky.social www.cell.com/developmenta...
cell.com
Cell-type-specific nucleotide sharing through gap junctions impacts sensitivity to replication stress in Drosophila
Boumard et al. demonstrate gap-junction-dependent tissue-scale nucleotide sharing, which impacts cellular sensitivity to perturbation of nucleotide homeostasis and replication stress. Drosophila wing ...
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Guillaume Charras @gcharras.bsky.social · 29/09/2025
Can pressure gradients persist over long timescales in animal cells? We induced intracellular pressure gradients and examined the resulting flows in single cells. We reveal surprisingly long lasting pressure gradients. More here: elifesciences.org/reviewed-pre...
elifesciences.org
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Robin Journot 🔬| 🎾 @robinjournot.bsky.social · 06/10/2025
Our paper is on the cover of @cp-devcell.bsky.social . Image: embryonic murine salivary-gland explants stained for fate determinants; p63 (cyan) and HES1 (yellow). Thanks to everyone involved. doi.org/10.1016/j.de...
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Thibaut Brunet @thibautbrunet.bsky.social · 05/10/2025
Latest from ours: www.cell.com/cell-reports... This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
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Barriga Lab @eliasbarrigalab.bsky.social · 23/09/2025
Are you interested on how regenerating tissues transit between stages? Am sharing here our work showing that during #Xenopus tail regeneration, tissue stiffening activates a Piezo1-Yap1 mechanosensitive cascade to allow wounded epithelia to transit into regenerative states!
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mhverlhac.bsky.social @mhverlhac.bsky.social · 28/08/2025
Three-Year Funded Postdoctoral Position to study organelle architecture in mammalian oocytes – Terret-Verlhac Lab, CIRB, Collège de France (Starting 2026). For more information, please contact: marie-helene.verlhac@college-de-france.fr
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Mehmet Can Uçar @mehmetcanucar.bsky.social · 22/08/2025
🚨 New paper out in @pnas.org! 🚨 We show that self-generated gradients allow heterogeneous cell mixtures to co-migrate efficiently over long distances —while optimizing their physical interactions! (See below for 🧵) www.pnas.org/doi/10.1073/... 🧪
pnas.org
Self-generated chemotaxis of mixed cell populations | PNAS
Cell and tissue movement in development, cancer invasion, and immune response relies on chemical or mechanical guidance cues. In many systems, this...
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epithelial mechanics fan club @epimechfc.bsky.social · 10/08/2025
Synthetic materials accumulate damage with every mechanical challenge. Epithelial tissues are regularly loaded, yet healthy epithelia rarely rupture. Why? We are @epmech.bsky.social and @baldaufsci.bsky.social and in this thread we introduce you to cyclic loading. bsky.app/profile/epim...
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Denis Krndija @deniskrndija.bsky.social · 01/08/2025
Mechanical forces shape the developing brain 🧠💥 Compression from high cell density doesn’t just squeeze cells - it compromises mitotic fidelity! New preprint on how mechanics impact neural development from Veronique Marthiens & co-authors @institutcurie.bsky.social @cbitoulouse.bsky.social 🧠🔧👇
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Robin Journot 🔬| 🎾 @robinjournot.bsky.social · 01/07/2025
🧵Just out ! We reveal how 4 branched epithelia—mammary, lacrimal, salivary & prostate—use a conserved YAP–Notch–p63 circuit to self-organize during development & regeneration. Here’s the story👇 authors.elsevier.com/c/1lM285Sx5g... Work done in @frelab.bsky.social at ‪ ‪ @institutcurie.bsky.social
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Zoya Mann @zoya-mann.bsky.social · 29/06/2025
My first experience at a GRC- excellent talks & stimulating conversations. Thanks to everyone to who stopped by my poster- your feedback were incredibly valuable to me. And of course, infinite gratitude goes to @yap-lab.bsky.social, an exceptional mentor and support throughout my journey!
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Bardin Lab @bardinlab.bsky.social · 25/06/2025
A highlight of our recent story!
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Bardin Lab @bardinlab.bsky.social · 13/06/2025
Students (Master's/PhD), do not miss this fantastic Developmental Biology course of @sorbonne-universite.fr and @institutcurie.bsky.social - It is FREE and open to international students, however, room and board + travel are not included. training.institut-curie.org/courses/deve...
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Denis Krndija @deniskrndija.bsky.social · 10/06/2025
Enjoying great science and stunning alpine views at the GRC on Cell Contact & Adhesion in Les Diablerets 🇨🇭⛰️ Proud of our PhD students Dhriti and Vishnu for their terrific work - posters and talks full of exciting insights! #CellContactAndAdhesionGRC #CellBiology #PhDLife #LesDiablerets
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Rodrigo Fernandez-Gonzalez @rodrigofg.bsky.social · 25/04/2025
Interested in Developmental Mechanics??? We are organizing a mechanobiology workshop in Baeza, Spain, October 21-23, 2025. Come join us (and please help us spread the word)!!!
Program and application instructions for the 2025 Mechanobiology of tissue morphogenesis and disease workshop in Baeza, Spain, October 21-23. Apply at https://www.unia.es/estudios-y-acceso/oferta-academica/formacion-continua/workshop-mechanobiology-of-tissue-morphogenesis-and-disease
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Hallou Lab @halloulab.bsky.social · 10/04/2025
Thank you @naturemethods.bsky.social for highlighting our recent paper on "Spatial Mechano-Transcriptomics" in your April Issue: www.nature.com/articles/s41... www.nature.com/articles/s41...
nature.com
A computational pipeline for spatial mechano-transcriptomics - Nature Methods
The authors present a computational framework that leverages mechanical force inference and spatial transcriptomics to enable analyses of the interplay between the transcriptomic and mechanical state.
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Lakshmi Balasubramaniam @lakshmib02.bsky.social · 10/04/2025
We are excited to share our recent preprint on how tissue spreading guides extracellular matrix changes during early morphogenesis @gurdoninstitute.bsky.social
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Swarnabh Bhattacharya @iamzico.bsky.social · 08/04/2025
I am excited to share my latest Postdoctoral work @cp-cellstemcell.bsky.social @cellpress.bsky.social (dlvr.it/TK2Fzl), in which we reveal that goblet and Paneth cells aren’t fixed lineages but represent dynamic states influenced by local cues. Here's a walkthrough of what we found (🧵)....
dlvr.it
Intestinal secretory differentiation reflects niche-driven phenotypic and epigenetic plasticity of a common signal-responsive terminal cell
Bhattacharya et al. delineate chromatin and mRNA dynamics of intestinal secretory differentiation. They demonstrate that goblet and Paneth cells are phenotypic variants of a facile signal-responsive A...
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Barriga Lab @eliasbarrigalab.bsky.social · 07/04/2025
REPOSTING this here just to officially leave "the other place" Our work on the role of endogenous electric fields in guiding collective cell migration during #morphogenesis is out @naturematerials.bsky.social nature.com/articles/s41...
nature.com
Stretch-induced endogenous electric fields drive directed collective cell migration in vivo - Nature Materials
Electric fields guide collective cell migration in developing embryos of Xenopus laevis via a voltage-sensitive phosphatase.
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Denis Krndija @deniskrndija.bsky.social · 06/04/2025
🥳 Thrilled to share our lab's first preprint, led by our talented postdoc Justine Creff! 👩🏻‍🔬 We tackled a fundamental question: how the epithelium withstands mechanical stress at the interface of cells with distinct geometries and mechanics, such as enterocytes (E) and goblet cells (G) (1/9)
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Young Embryologist Network @yen-network.bsky.social · 06/04/2025
🚨 Abstracts are due next week! 🚨 Submit your abstract to give a talk or poster at YEN 2025 by the 12th April! Share this opportunity with dev bio and stem cell PhD students. The conference is FREE and full of great science. We are looking forward to seeing you there!
YEN Conference Poster
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Anabela Bensimon-Brito @bensimonbrito.bsky.social · 31/03/2025
Are postdocs the rarest species, or is it just me? We have two funded positions—apply now and join us on these exciting projects! #zebrafish #zebrafishcareers #iPSC #devbio #regeneration
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Anabela Bensimon-Brito @bensimonbrito.bsky.social · 13/03/2025
Are you passionate about live-imaging microscopy? Do you have a special talent for working with iPSCs? Or are you simply a zebrafish aficionado? 🐟 We have 2 funded postdoctoral positions in our lab (cbi-toulouse.fr/eng/equipe-b...). Join us and apply now! Please spread the word 🙏
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Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 01/02/2025
bit.ly
Shaping epithelial tissues by stem cell mechanics in development and cancer
Nature Reviews Molecular Cell Biology, Published online: 29 January 2025; doi:10.1038/s41580-024-00821-0Adult stem cells self-renew and differentiate to build, maintain and repair tissues. This Review discusses recent insights into the contribution of…
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Sara Wickstrom @sarawickstrom.bsky.social · 24/01/2025
Interested in the cell biology of the nucleus? Join us for this unique exciting meeting that covers everything from nuclear biophysics and mechanics to signaling and evolution😍 amazing speaker list and more will be selected from abstracts 🤩
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Benoit Ladoux @bladoux.bsky.social · 08/01/2025
Happy to share our new publication in @naturephysics.bsky.social on life and death of eliminated cells! Great collaboration between our CAM team and Doostmohammadi's. Special congrats @lakshmib02.bsky.social and Siavash Monfared! 🎉 www.nature.com/articles/s41...
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Julie Batut ✨️ @juliebatut.bsky.social · 05/01/2025
Happy New year✨️🌟🤗 inclusion, stars, interactions and fantastic projects✨️🌟👍🎊. Last article in 🇨🇵 on inclusion thanks so much Lena Saoui. lopinion.com/articles/por...
lopinion.com
Rendre la Science plus inclusive, le combat de la chercheuse toulousaine Julie Batut
Julie Batut ne se contente pas d'exceller dans son domaine. La chercheuse milite activement pour faire de la Science une discipline accessible au plus grand nombre.
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Ralitza Staneva @ralitzastaneva.bsky.social · 22/12/2024
Very happy to share my first story in @levayerr.bsky.social lab, where we show that localized apoptosis drives JNK-dependent developmental delay to ensure global tissue size robustness 🪰
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Julie Batut ✨️ @juliebatut.bsky.social · 22/12/2024
❗️Our new paper "Local activation of Cxcl12a signaling controls olfactory placode morphogenesis in zebrafish embryos" is out 👇 bioRxiv.🙏 Thanks so much to all coauthors: fantastic people😍🤩 ✨️fantastic work. Mathematical modeling to understand morphogenesis. Get in touch if interessed, more to come😉
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